CsaV3_2G034320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G034320
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionacanthoscurrin-1-like
Locationchr2 : 22724655 .. 22726549 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGACAGCTCAAAATTCGGATCATGATCTTATTAATATATACCCAAAATTAAACATTTCATGTCAGTCCCCTTGTTTGTAATGTAATATAGCATTGGTCTCTATAAATAGCAGGCTAAACCCAAGTCCTTGTTCGAACATCTCACAAACCAGCTCTGTTTTTGTTTCTTTCTTTTGCTTTTCCTTTTACATAAGAGTGTGGGTGGAAGAGATTATGAAGTCCAAAGGTTTTGTATTTGTGTGTCTTCTTCTTGTGTCTGCTTTGGTTGTTTCGTGGGCTATAGAATCCCACACTGAGTCAACCCAGGATGAGCAACAAGGTATATTATTCTAATTCTAACTTTAATTTGTACACTACTTGCAAATTGTGAACATGAAATTACCTTTCTTGGGGTTATGAGGGTGGGGAAAAATGACAAATAATTAGAGTATGTCAAATAATTTTTAACTATTTGGCTAGTATTTAGATTGAAATTTTTTCAATACCATTCTTAGTTTTAAAGAATTAGGTGGATTTAAAAGATATTAATTAAACATTTTTTAGTTTAAAACATTTATTTAAAATTAAAAAATAATCAGTATTCTCTTTTTCTTCTCCCCCTTCCTCTTCTCTCCTCCTCTCCTCCTCTGTTCTTCTTTCTATCTTTACCTCCAAGTCCCAGCTCAATTTTTTTTCTAGAAAAAAGTGGGTCTCGAAAATGTTTCTTATTTTCTTTTCTTTTCTTTTTTTAATTCTTTTTCTTTATTTTCCGAAAATGGTATAAAAACTTGAATACTTTGAAATTGTTGTTGGCCTTTCGAATTTCATTTTATTTATTCATAGAAGTTTGGTATCTTCAAGTTTTTTTTTCTTCCCAAAACCAAGTAATCATTCAAATCATTCAAACTGGTAAGAAAGAAGTATATTAGGATAAAGAAAAAGGAGAAAATAGAAGTCTTAAGACCGTTTGCTTGAAAAAAAGAAGTTGGGAGGTGAAGATGAAAAGTATTCAAGAGAGAACGAAGAAAAGTACTCTAGAGAAAATATTTAATAATGTTTAATTTGCAAAATATTATAAAATAATTAAAAAAGTTTAATTAATGATGTTAGAGACCTTCTGAGCTTCTACTGAAAAAAAAATGAAAATATATATTGATGAATGGCCAAAATAGATTCATGCTTAGGATGCTTTTAAATAGTAATAATGGGAAAGAACTTCCTTGATGCTTAAATTGTATGAATTTTTGTTGCTAATTATTGCATGCGATATTCTTGGCTCCCAGTGAATCTAGCCCATGACTTAGAAGAGCCTAAATATACACATGGCGGCGGTGGCAGTTATGGAGGAGGCGGCGGAGGGTCTAGTGGAGGAGGATCTAGCGGTGGCGGTTATGGAGGCGGTGGTAGCCATGGTGGAGGTGGGTCTGGTGGTGGCGGTCAAGGCAGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGCAGCGGTGGTGGAGGTTCCGGCGGCGGAGGCAGTTATGGAGGAGGTGGGAAAGGAGGAGGAGGTGGGAAAGGCGGAGGAGGAGGGGGTAGTGGATCGAGCGGTGGTGGTAAAGGGGGCGGAGGAAGTGGGTCCGGAGGAGGGGGGAAAGGTGGAGGAGGTAGTGGATCGAGCGGTGGTGGTAAAGGGGGCGGAGGAAGTGGGTCCGGAGGAGGTGGGAAAGGCGGTGGAGGAGGAGGGAAAGGGGGCGGAGGCGGTGGATATGGGGGAGGAGGAGGGAAAGGGGGCGGAGGCGGTGGATATGGAGGAGGAGGAGGGAAAGGGGGCGGAGGCGGTAAAGGCGGAGGAGGAGGAGGAGGGGGAGGGTATGAAGATAGGGAGTATAAAAAGGGAGGAGACGGAAGCGAAGGTGGATGGAAAGGCAACGGTGGTGGAAAGTGA

mRNA sequence

ATGAAGTCCAAAGGTTTTGTATTTGTGTGTCTTCTTCTTGTGTCTGCTTTGGTTGTTTCGTGGGCTATAGAATCCCACACTGAGTCAACCCAGGATGAGCAACAAGTGAATCTAGCCCATGACTTAGAAGAGCCTAAATATACACATGGCGGCGGTGGCAGTTATGGAGGAGGCGGCGGAGGGTCTAGTGGAGGAGGATCTAGCGGTGGCGGTTATGGAGGCGGTGGTAGCCATGGTGGAGGTGGGTCTGGTGGTGGCGGTCAAGGCAGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGCAGCGGTGGTGGAGGTTCCGGCGGCGGAGGCAGTTATGGAGGAGGTGGGAAAGGAGGAGGAGGTGGGAAAGGCGGAGGAGGAGGGGGTAGTGGATCGAGCGGTGGTGGTAAAGGGGGCGGAGGAAGTGGGTCCGGAGGAGGTGGGAAAGGCGGTGGAGGAGGAGGGAAAGGGGGCGGAGGCGGTGGATATGGGGGAGGAGGAGGGAAAGGGGGCGGAGGCGGTGGATATGGAGGAGGAGGAGGGAAAGGGGGCGGAGGCGGTAAAGGCGGAGGAGGAGGAGGAGGGGGAGGGTATGAAGATAGGGAGTATAAAAAGGGAGGAGACGGAAGCGAAGGTGGATGGAAAGGCAACGGTGGTGGAAAGTGA

Coding sequence (CDS)

ATGAAGTCCAAAGGTTTTGTATTTGTGTGTCTTCTTCTTGTGTCTGCTTTGGTTGTTTCGTGGGCTATAGAATCCCACACTGAGTCAACCCAGGATGAGCAACAAGTGAATCTAGCCCATGACTTAGAAGAGCCTAAATATACACATGGCGGCGGTGGCAGTTATGGAGGAGGCGGCGGAGGGTCTAGTGGAGGAGGATCTAGCGGTGGCGGTTATGGAGGCGGTGGTAGCCATGGTGGAGGTGGGTCTGGTGGTGGCGGTCAAGGCAGTGGAGGATCTGGCGGAGGCGGTCAAGGAGGCAGCGGTGGTGGAGGTTCCGGCGGCGGAGGCAGTTATGGAGGAGGTGGGAAAGGAGGAGGAGGTGGGAAAGGCGGAGGAGGAGGGGGTAGTGGATCGAGCGGTGGTGGTAAAGGGGGCGGAGGAAGTGGGTCCGGAGGAGGTGGGAAAGGCGGTGGAGGAGGAGGGAAAGGGGGCGGAGGCGGTGGATATGGGGGAGGAGGAGGGAAAGGGGGCGGAGGCGGTGGATATGGAGGAGGAGGAGGGAAAGGGGGCGGAGGCGGTAAAGGCGGAGGAGGAGGAGGAGGGGGAGGGTATGAAGATAGGGAGTATAAAAAGGGAGGAGACGGAAGCGAAGGTGGATGGAAAGGCAACGGTGGTGGAAAGTGA

Protein sequence

MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQVNLAHDLEEPKYTHGGGGSYGGGGGGSSGGGSSGGGYGGGGSHGGGGSGGGGQGSGGSGGGGQGGSGGGGSGGGGSYGGGGKGGGGGKGGGGGGSGSSGGGKGGGGSGSGGGGKGGGGGGKGGGGGGYGGGGGKGGGGGGYGGGGGKGGGGGKGGGGGGGGGYEDREYKKGGDGSEGGWKGNGGGK
Homology
[Close]
BLAST of CsaV3_2G034320 vs. NCBI nr
Match: XP_011650210.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1   MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQVNLAHDLEEPKYTHGGGGSY 56
           MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQVNLAHDLEEPKYTHGGGGSY
Sbjct: 54  MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQVNLAHDLEEPKYTHGGGGSY 108

[Close]
BLAST of CsaV3_2G034320 vs. NCBI nr
Match: XP_016901857.1 (PREDICTED: acanthoscurrin-1-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 4.1e-08
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 1  MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQVNLAHDLEEPKYTHGGG 53
          MKSKGF+FVCLLLVSAL VSWA+ES T+  Q++QQV  AHD+EE K+  G G
Sbjct: 1  MKSKGFLFVCLLLVSALAVSWAVESRTQPIQNDQQV--AHDVEEAKHKGGSG 50

[Close]
BLAST of CsaV3_2G034320 vs. NCBI nr
Match: XP_011650209.1 (PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus] >KGN63186.1 hypothetical protein Csa_2G407830 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 7.0e-08
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 1  MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQVNLAHDLEEPKYTHGGGG 54
          MKSKGF+F CLLLVSAL VSWA+ES T+  Q +QQV  AHD+EE K+  G GG
Sbjct: 1  MKSKGFLFGCLLLVSALAVSWAVESRTQPIQHDQQV--AHDVEEAKHRSGSGG 51

[Close]
BLAST of CsaV3_2G034320 vs. NCBI nr
Match: XP_022140564.1 (acanthoscurrin-2-like isoform X1 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQVN-LAHDLEE 45
          MKSKGF+F+CLLL+SALV+SWAIESHT  T+DE++VN + H+ E+
Sbjct: 1  MKSKGFLFLCLLLLSALVISWAIESHT--TKDEKEVNYVGHEAED 43

[Close]
BLAST of CsaV3_2G034320 vs. NCBI nr
Match: XP_022140565.1 (acanthoscurrin-2-like isoform X2 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQVN-LAHDLEE 45
          MKSKGF+F+CLLL+SALV+SWAIESHT  T+DE++VN + H+ E+
Sbjct: 1  MKSKGFLFLCLLLLSALVISWAIESHT--TKDEKEVNYVGHEAED 43

[Close]
BLAST of CsaV3_2G034320 vs. TrEMBL
Match: tr|A0A1S4E0T9|A0A1S4E0T9_CUCME (acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103496044 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.7e-08
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 1  MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQVNLAHDLEEPKYTHGGG 53
          MKSKGF+FVCLLLVSAL VSWA+ES T+  Q++QQV  AHD+EE K+  G G
Sbjct: 1  MKSKGFLFVCLLLVSALAVSWAVESRTQPIQNDQQV--AHDVEEAKHKGGSG 50

[Close]
BLAST of CsaV3_2G034320 vs. TrEMBL
Match: tr|A0A0A0LT28|A0A0A0LT28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G407830 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.6e-08
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 1  MKSKGFVFVCLLLVSALVVSWAIESHTESTQDEQQVNLAHDLEEPKYTHGGGG 54
          MKSKGF+F CLLLVSAL VSWA+ES T+  Q +QQV  AHD+EE K+  G GG
Sbjct: 1  MKSKGFLFGCLLLVSALAVSWAVESRTQPIQHDQQV--AHDVEEAKHRSGSGG 51

The following BLAST results are available for this feature:
BLAST of CsaV3_2G034320 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650210.11.1e-21100.00PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis sativus][more]
XP_016901857.14.1e-0867.31PREDICTED: acanthoscurrin-1-like [Cucumis melo][more]
XP_011650209.17.0e-0866.04PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus] >KGN63186.1 hypothet... [more]
XP_022140564.11.5e-0566.67acanthoscurrin-2-like isoform X1 [Momordica charantia][more]
XP_022140565.11.5e-0566.67acanthoscurrin-2-like isoform X2 [Momordica charantia][more]
BLAST of CsaV3_2G034320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G034320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G034320 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E0T9|A0A1S4E0T9_CUCME2.7e-0867.31acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103496044 PE=4 SV=1[more]
tr|A0A0A0LT28|A0A0A0LT28_CUCSA4.6e-0866.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G407830 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010800GRP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G034320.1CsaV3_2G034320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010800Glycine rich proteinPFAMPF07172GRPcoord: 1..92
e-value: 1.3E-7
score: 32.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..221

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G034320CSPI02G25800Wild cucumber (PI 183967)cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G034320Cucumber (Chinese Long) v3cuccucB099
CsaV3_2G034320Silver-seed gourdcarcucB0844
CsaV3_2G034320Cucumber (Gy14) v2cgybcucB065
CsaV3_2G034320Cucumber (Gy14) v2cgybcucB316
CsaV3_2G034320Cucumber (Gy14) v1cgycucB092
CsaV3_2G034320Cucurbita maxima (Rimu)cmacucB0606
CsaV3_2G034320Cucurbita maxima (Rimu)cmacucB0702
CsaV3_2G034320Cucurbita moschata (Rifu)cmocucB0114
CsaV3_2G034320Cucurbita moschata (Rifu)cmocucB0592
CsaV3_2G034320Cucurbita moschata (Rifu)cmocucB0640
CsaV3_2G034320Cucurbita moschata (Rifu)cmocucB0688
CsaV3_2G034320Cucurbita pepo (Zucchini)cpecucB0290
CsaV3_2G034320Cucurbita pepo (Zucchini)cpecucB0336
CsaV3_2G034320Cucurbita pepo (Zucchini)cpecucB0828
CsaV3_2G034320Cucurbita pepo (Zucchini)cpecucB0880
CsaV3_2G034320Wild cucumber (PI 183967)cpicucB385
CsaV3_2G034320Bottle gourd (USVL1VR-Ls)cuclsiB105
CsaV3_2G034320Bottle gourd (USVL1VR-Ls)cuclsiB110
CsaV3_2G034320Melon (DHL92) v3.5.1cucmeB103
CsaV3_2G034320Melon (DHL92) v3.5.1cucmeB107
CsaV3_2G034320Melon (DHL92) v3.6.1cucmedB096
CsaV3_2G034320Melon (DHL92) v3.6.1cucmedB100
CsaV3_2G034320Watermelon (Charleston Gray)cucwcgB136
CsaV3_2G034320Watermelon (Charleston Gray)cucwcgB141
CsaV3_2G034320Watermelon (97103) v1cucwmB158
CsaV3_2G034320Watermelon (97103) v1cucwmB165
CsaV3_2G034320Watermelon (97103) v2cucwmbB122
CsaV3_2G034320Watermelon (97103) v2cucwmbB127
CsaV3_2G034320Wax gourdcucwgoB180
CsaV3_2G034320Wax gourdcucwgoB158