CsaV3_2G032940 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G032940
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 21776636 .. 21777001 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTACAAAGGCATAAAAAGAAGGGCGAGTAGGTGCATCCCAAGGTGCAACCATCTCTATGCTTTCCTCCCCTATCATAGGCACCAAAAAAGTAATTTAAATATTTTTAAAAATTTCCACATGTCACATTATGATAGGACAATTTGGTGGGATGCACAAAGATGTGTGCACCCCGGAATGCACCTAAATATTTTTTTTAAGAATGAACCCGAAAAAGAGAAGCCCAAGAACAAGCTACATAAAATAACTCCAATCCAACAAAATCAAACCAAGATCGTAAATACAAAAATACCTAGTGATGCACACTCAAAGGGAGGCAATACATCTAGCGAACTCCCAAACCTCAGCCACACGACCTCTTAA

mRNA sequence

ATGAATTACAAAGGCATAAAAAGAAGGGCGAGTAGGTGCATCCCAAGGTGCAACCATCTCTATGCTTTCCTCCCCTATCATAGGCACCAAAAAAGTAATTTAAATATTTTTAAAAATTTCCACATGTCACATTATGATAGGACAATTTGGTGGGATGCACAAAGATGTGTGCACCCCGGAATGCACCTAAATATTTTTTTTAAGAATGAACCCGAAAAAGAGAAGCCCAAGAACAAGCTACATAAAATAACTCCAATCCAACAAAATCAAACCAAGATCGTAAATACAAAAATACCTAGTGATGCACACTCAAAGGGAGGCAATACATCTAGCGAACTCCCAAACCTCAGCCACACGACCTCTTAA

Coding sequence (CDS)

ATGAATTACAAAGGCATAAAAAGAAGGGCGAGTAGGTGCATCCCAAGGTGCAACCATCTCTATGCTTTCCTCCCCTATCATAGGCACCAAAAAAGTAATTTAAATATTTTTAAAAATTTCCACATGTCACATTATGATAGGACAATTTGGTGGGATGCACAAAGATGTGTGCACCCCGGAATGCACCTAAATATTTTTTTTAAGAATGAACCCGAAAAAGAGAAGCCCAAGAACAAGCTACATAAAATAACTCCAATCCAACAAAATCAAACCAAGATCGTAAATACAAAAATACCTAGTGATGCACACTCAAAGGGAGGCAATACATCTAGCGAACTCCCAAACCTCAGCCACACGACCTCTTAA

Protein sequence

MNYKGIKRRASRCIPRCNHLYAFLPYHRHQKSNLNIFKNFHMSHYDRTIWWDAQRCVHPGMHLNIFFKNEPEKEKPKNKLHKITPIQQNQTKIVNTKIPSDAHSKGGNTSSELPNLSHTTS

Homology

[Close]

BLAST of CsaV3_2G032940 vs. NCBI nr
Match: KGN63045.1 (hypothetical protein Csa_2G386140 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 5.3e-66
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MNYKGIKRRASRCIPRCNHLYAFLPYHRHQKSNLNIFKNFHMSHYDRTIWWDAQRCVHPG 60
           MNYKGIKRRASRCIPRCNHLYAFLPYHRHQKSNLNIFKNFHMSHYDRTIWWDAQRCVHPG
Sbjct: 1   MNYKGIKRRASRCIPRCNHLYAFLPYHRHQKSNLNIFKNFHMSHYDRTIWWDAQRCVHPG 60

Query: 61  MHLNIFFKNEPEKEKPKNKLHKITPIQQNQTKIVNTKIPSDAHSKGGNTSSELPNLSHTT 120
           MHLNIFFKNEPEKEKPKNKLHKITPIQQNQTKIVNTKIPSDAHSKGGNTSSELPNLSHTT
Sbjct: 61  MHLNIFFKNEPEKEKPKNKLHKITPIQQNQTKIVNTKIPSDAHSKGGNTSSELPNLSHTT 120

Query: 121 S 122
           S
Sbjct: 121 S 121

[Close]

BLAST of CsaV3_2G032940 vs. TrEMBL
Match: tr|A0A0A0LMC6|A0A0A0LMC6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G386140 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.5e-66
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MNYKGIKRRASRCIPRCNHLYAFLPYHRHQKSNLNIFKNFHMSHYDRTIWWDAQRCVHPG 60
           MNYKGIKRRASRCIPRCNHLYAFLPYHRHQKSNLNIFKNFHMSHYDRTIWWDAQRCVHPG
Sbjct: 1   MNYKGIKRRASRCIPRCNHLYAFLPYHRHQKSNLNIFKNFHMSHYDRTIWWDAQRCVHPG 60

Query: 61  MHLNIFFKNEPEKEKPKNKLHKITPIQQNQTKIVNTKIPSDAHSKGGNTSSELPNLSHTT 120
           MHLNIFFKNEPEKEKPKNKLHKITPIQQNQTKIVNTKIPSDAHSKGGNTSSELPNLSHTT
Sbjct: 61  MHLNIFFKNEPEKEKPKNKLHKITPIQQNQTKIVNTKIPSDAHSKGGNTSSELPNLSHTT 120

Query: 121 S 122
           S
Sbjct: 121 S 121

The following BLAST results are available for this feature:

BLAST of CsaV3_2G032940 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63045.1	5.3e-66	100.00	hypothetical protein Csa_2G386140 [Cucumis sativus]	[more]

BLAST of CsaV3_2G032940 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G032940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G032940 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMC6\|A0A0A0LMC6_CUCSA	3.5e-66	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G386140 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G032940.1	CsaV3_2G032940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..121

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G032940	Silver-seed gourd	carcucB0289
CsaV3_2G032940	Silver-seed gourd	carcucB0720
CsaV3_2G032940	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G032940	Cucumber (Gy14) v1	cgycucB247
CsaV3_2G032940	Cucurbita maxima (Rimu)	cmacucB0328
CsaV3_2G032940	Cucurbita maxima (Rimu)	cmacucB0828
CsaV3_2G032940	Cucurbita moschata (Rifu)	cmocucB0323
CsaV3_2G032940	Cucurbita moschata (Rifu)	cmocucB0813
CsaV3_2G032940	Cucurbita pepo (Zucchini)	cpecucB0193
CsaV3_2G032940	Cucurbita pepo (Zucchini)	cpecucB0483
CsaV3_2G032940	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G032940	Bottle gourd (USVL1VR-Ls)	cuclsiB157
CsaV3_2G032940	Melon (DHL92) v3.5.1	cucmeB125
CsaV3_2G032940	Melon (DHL92) v3.6.1	cucmedB119
CsaV3_2G032940	Watermelon (Charleston Gray)	cucwcgB174
CsaV3_2G032940	Watermelon (97103) v1	cucwmB122
CsaV3_2G032940	Watermelon (97103) v2	cucwmbB161
CsaV3_2G032940	Wax gourd	cucwgoB176