CsaV3_2G032110 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G032110
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 21185596 .. 21185958 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACTGTGATAAAGAAGAGGAGAAAGAGGGGTCCAAGATTTAAATACCATTACAGCTCGGCAATGGCAGACTATGAGGTTGAGTTAGTTGACATGTTTGAACACCCACCACTACTATCCTACTTTGCATTTATTATTCCCATTTTTTCTTACCCACATTCCGACGAAATTACCAACGCCATCATTCATTCTAATCAAATCCCTTACCTCTCCACTCCTCCTCTTTCTCTCTGTTCTTTCCTTCTATTACAGACTTGGAATTTGTTTTTATGGATTTCCCTTCCTTTATTTTACTTACCAATTCCTCGCGGTTTGTTCGCCCCTACCAGTTTTTTGGTTTCCCTGTTCCCCACTTTCTAA

mRNA sequence

ATGGAAACTGTGATAAAGAAGAGGAGAAAGAGGGGTCCAAGATTTAAATACCATTACAGCTCGGCAATGGCAGACTATGAGGTTGAGTTAGTTGACATGTTTGAACACCCACCACTACTATCCTACTTTGCATTTATTATTCCCATTTTTTCTTACCCACATTCCGACGAAATTACCAACGCCATCATTCATTCTAATCAAATCCCTTACCTCTCCACTCCTCCTCTTTCTCTCTGTTCTTTCCTTCTATTACAGACTTGGAATTTGTTTTTATGGATTTCCCTTCCTTTATTTTACTTACCAATTCCTCGCGGTTTGTTCGCCCCTACCAGTTTTTTGGTTTCCCTGTTCCCCACTTTCTAA

Coding sequence (CDS)

ATGGAAACTGTGATAAAGAAGAGGAGAAAGAGGGGTCCAAGATTTAAATACCATTACAGCTCGGCAATGGCAGACTATGAGGTTGAGTTAGTTGACATGTTTGAACACCCACCACTACTATCCTACTTTGCATTTATTATTCCCATTTTTTCTTACCCACATTCCGACGAAATTACCAACGCCATCATTCATTCTAATCAAATCCCTTACCTCTCCACTCCTCCTCTTTCTCTCTGTTCTTTCCTTCTATTACAGACTTGGAATTTGTTTTTATGGATTTCCCTTCCTTTATTTTACTTACCAATTCCTCGCGGTTTGTTCGCCCCTACCAGTTTTTTGGTTTCCCTGTTCCCCACTTTCTAA

Protein sequence

METVIKKRRKRGPRFKYHYSSAMADYEVELVDMFEHPPLLSYFAFIIPIFSYPHSDEITNAIIHSNQIPYLSTPPLSLCSFLLLQTWNLFLWISLPLFYLPIPRGLFAPTSFLVSLFPTF
Homology
[Close]
BLAST of CsaV3_2G032110 vs. NCBI nr
Match: KGN62954.1 (hypothetical protein Csa_2G381795 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 1.3e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   METVIKKRRKRGPRFKYHYSSAMADYEVELVDMFEHPPLLSYFAFIIPIFSYPHSDEITN 60
           METVIKKRRKRGPRFKYHYSSAMADYEVELVDMFEHPPLLSYFAFIIPIFSYPHSDEITN
Sbjct: 1   METVIKKRRKRGPRFKYHYSSAMADYEVELVDMFEHPPLLSYFAFIIPIFSYPHSDEITN 60

Query: 61  AIIHSNQIPYLSTPPLSLCSFLLLQTWNLFLWISLPLFYLPIPRGLFAPTSFLVSLFPTF 120
           AIIHSNQIPYLSTPPLSLCSFLLLQTWNLFLWISLPLFYLPIPRGLFAPTSFLVSLFPTF
Sbjct: 61  AIIHSNQIPYLSTPPLSLCSFLLLQTWNLFLWISLPLFYLPIPRGLFAPTSFLVSLFPTF 120

[Close]
BLAST of CsaV3_2G032110 vs. TrEMBL
Match: tr|A0A0A0LPM1|A0A0A0LPM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381795 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 8.8e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   METVIKKRRKRGPRFKYHYSSAMADYEVELVDMFEHPPLLSYFAFIIPIFSYPHSDEITN 60
           METVIKKRRKRGPRFKYHYSSAMADYEVELVDMFEHPPLLSYFAFIIPIFSYPHSDEITN
Sbjct: 1   METVIKKRRKRGPRFKYHYSSAMADYEVELVDMFEHPPLLSYFAFIIPIFSYPHSDEITN 60

Query: 61  AIIHSNQIPYLSTPPLSLCSFLLLQTWNLFLWISLPLFYLPIPRGLFAPTSFLVSLFPTF 120
           AIIHSNQIPYLSTPPLSLCSFLLLQTWNLFLWISLPLFYLPIPRGLFAPTSFLVSLFPTF
Sbjct: 61  AIIHSNQIPYLSTPPLSLCSFLLLQTWNLFLWISLPLFYLPIPRGLFAPTSFLVSLFPTF 120

The following BLAST results are available for this feature:
BLAST of CsaV3_2G032110 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62954.11.3e-61100.00hypothetical protein Csa_2G381795 [Cucumis sativus][more]
BLAST of CsaV3_2G032110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G032110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G032110 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPM1|A0A0A0LPM1_CUCSA8.8e-62100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381795 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G032110.1CsaV3_2G032110.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G032110CSPI02G23560Wild cucumber (PI 183967)cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G032110Watermelon (97103) v2cucwmbB138
CsaV3_2G032110Watermelon (97103) v2cucwmbB158
CsaV3_2G032110Watermelon (97103) v2cucwmbB160
CsaV3_2G032110Wax gourdcucwgoB170
CsaV3_2G032110Wax gourdcucwgoB208
CsaV3_2G032110Cucumber (Chinese Long) v3cuccucB065
CsaV3_2G032110Cucumber (Chinese Long) v3cuccucB075
CsaV3_2G032110Cucumber (Chinese Long) v3cuccucB080
CsaV3_2G032110Silver-seed gourdcarcucB0159
CsaV3_2G032110Silver-seed gourdcarcucB0665
CsaV3_2G032110Silver-seed gourdcarcucB0694
CsaV3_2G032110Silver-seed gourdcarcucB1015
CsaV3_2G032110Cucumber (Gy14) v2cgybcucB065
CsaV3_2G032110Cucumber (Gy14) v2cgybcucB066
CsaV3_2G032110Cucumber (Gy14) v2cgybcucB114
CsaV3_2G032110Cucumber (Gy14) v2cgybcucB166
CsaV3_2G032110Cucumber (Gy14) v1cgycucB101
CsaV3_2G032110Cucumber (Gy14) v1cgycucB247
CsaV3_2G032110Cucumber (Gy14) v1cgycucB485
CsaV3_2G032110Cucurbita maxima (Rimu)cmacucB0016
CsaV3_2G032110Cucurbita maxima (Rimu)cmacucB0082
CsaV3_2G032110Cucurbita maxima (Rimu)cmacucB0192
CsaV3_2G032110Cucurbita maxima (Rimu)cmacucB0208
CsaV3_2G032110Cucurbita maxima (Rimu)cmacucB0531
CsaV3_2G032110Cucurbita maxima (Rimu)cmacucB0935
CsaV3_2G032110Cucurbita maxima (Rimu)cmacucB0937
CsaV3_2G032110Cucurbita moschata (Rifu)cmocucB0006
CsaV3_2G032110Cucurbita moschata (Rifu)cmocucB0071
CsaV3_2G032110Cucurbita moschata (Rifu)cmocucB0176
CsaV3_2G032110Cucurbita moschata (Rifu)cmocucB0191
CsaV3_2G032110Cucurbita moschata (Rifu)cmocucB0925
CsaV3_2G032110Cucurbita moschata (Rifu)cmocucB0927
CsaV3_2G032110Cucurbita pepo (Zucchini)cpecucB0116
CsaV3_2G032110Cucurbita pepo (Zucchini)cpecucB0119
CsaV3_2G032110Cucurbita pepo (Zucchini)cpecucB0147
CsaV3_2G032110Cucurbita pepo (Zucchini)cpecucB0451
CsaV3_2G032110Cucurbita pepo (Zucchini)cpecucB0677
CsaV3_2G032110Cucurbita pepo (Zucchini)cpecucB0681
CsaV3_2G032110Cucurbita pepo (Zucchini)cpecucB0831
CsaV3_2G032110Cucurbita pepo (Zucchini)cpecucB0958
CsaV3_2G032110Cucurbita pepo (Zucchini)cpecucB1004
CsaV3_2G032110Wild cucumber (PI 183967)cpicucB083
CsaV3_2G032110Wild cucumber (PI 183967)cpicucB141
CsaV3_2G032110Wild cucumber (PI 183967)cpicucB205
CsaV3_2G032110Bottle gourd (USVL1VR-Ls)cuclsiB135
CsaV3_2G032110Bottle gourd (USVL1VR-Ls)cuclsiB148
CsaV3_2G032110Bottle gourd (USVL1VR-Ls)cuclsiB152
CsaV3_2G032110Melon (DHL92) v3.5.1cucmeB124
CsaV3_2G032110Melon (DHL92) v3.5.1cucmeB127
CsaV3_2G032110Melon (DHL92) v3.5.1cucmeB152
CsaV3_2G032110Melon (DHL92) v3.6.1cucmedB118
CsaV3_2G032110Melon (DHL92) v3.6.1cucmedB121
CsaV3_2G032110Watermelon (Charleston Gray)cucwcgB117
CsaV3_2G032110Watermelon (Charleston Gray)cucwcgB151
CsaV3_2G032110Watermelon (Charleston Gray)cucwcgB170
CsaV3_2G032110Watermelon (Charleston Gray)cucwcgB173
CsaV3_2G032110Watermelon (97103) v1cucwmB121
CsaV3_2G032110Watermelon (97103) v1cucwmB132
CsaV3_2G032110Watermelon (97103) v1cucwmB139
CsaV3_2G032110Watermelon (97103) v1cucwmB178
CsaV3_2G032110Watermelon (97103) v2cucwmbB113