CsaV3_2G031030 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G031030
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 20407856 .. 20408296 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCACATATACTGGATCGCACGAACCATCGATGCTTTTCCAAGAAAGAGGCAAGAAACTAAACACATGGACAGGAAGAGAAGAGAAGCACAACCAGCTTGTAGAGTATCGAATTACAACTACTTAGCTGTAGTTTTTGAAGAAATGCCGACAAATTGTGGTTGCTGGACGAGAAAATTGATCTTCGATCTTGGATCCAGGAGTTTACGACGATCTCCGATGAACCCTAGTTGAAATGGCGGTAGAGGGGAAATACTTGTTCCAGAAATTTGTTGGAAATGATTTACAAGAAAGAGAGAGAGAAGTGGTGTAAACTGGCAGCGTAGCTTCCAAGCTGAATCGGCAATTTACAGTAGCCCACCAGTGTCCCACGATCTTCGGGATTTAACGGTTCTCTGTGCTCTGACCGGCGGCTTCCGGCAATCGTATCGTTATTAA

mRNA sequence

ATGCCGCACATATACTGGATCGCACGAACCATCGATGCTTTTCCAAGAAAGAGGCAAGAAACTAAACACATGGACAGGAAGAGAAGAGAAGCACAACCAGCTTGTAGAGTATCGAATTACAACTACTTAGCTCGTAGCTTCCAAGCTGAATCGGCAATTTACAGTAGCCCACCAGTGTCCCACGATCTTCGGGATTTAACGGTTCTCTGTGCTCTGACCGGCGGCTTCCGGCAATCGTATCGTTATTAA

Coding sequence (CDS)

ATGCCGCACATATACTGGATCGCACGAACCATCGATGCTTTTCCAAGAAAGAGGCAAGAAACTAAACACATGGACAGGAAGAGAAGAGAAGCACAACCAGCTTGTAGAGTATCGAATTACAACTACTTAGCTCGTAGCTTCCAAGCTGAATCGGCAATTTACAGTAGCCCACCAGTGTCCCACGATCTTCGGGATTTAACGGTTCTCTGTGCTCTGACCGGCGGCTTCCGGCAATCGTATCGTTATTAA

Protein sequence

MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVSHDLRDLTVLCALTGGFRQSYRY
Homology
[Close]
BLAST of CsaV3_2G031030 vs. NCBI nr
Match: KGN62830.1 (hypothetical protein Csa_2G375220 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 2.6e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS 60
          MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS
Sbjct: 1  MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS 60

Query: 61 HDLRDLTVLCALTGGFRQSYRY 83
          HDLRDLTVLCALTGGFRQSYRY
Sbjct: 61 HDLRDLTVLCALTGGFRQSYRY 82

[Close]
BLAST of CsaV3_2G031030 vs. TrEMBL
Match: tr|A0A0A0LLL1|A0A0A0LLL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G375220 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS 60
          MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS
Sbjct: 1  MPHIYWIARTIDAFPRKRQETKHMDRKRREAQPACRVSNYNYLARSFQAESAIYSSPPVS 60

Query: 61 HDLRDLTVLCALTGGFRQSYRY 83
          HDLRDLTVLCALTGGFRQSYRY
Sbjct: 61 HDLRDLTVLCALTGGFRQSYRY 82

The following BLAST results are available for this feature:
BLAST of CsaV3_2G031030 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62830.12.6e-40100.00hypothetical protein Csa_2G375220 [Cucumis sativus][more]
BLAST of CsaV3_2G031030 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G031030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G031030 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LLL1|A0A0A0LLL1_CUCSA1.7e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G375220 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G031030.1CsaV3_2G031030.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G031030CSPI02G22400Wild cucumber (PI 183967)cpicucB081
CsaV3_2G031030CsGy2G022160Cucumber (Gy14) v2cgybcucB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G031030Silver-seed gourdcarcucB0065
CsaV3_2G031030Silver-seed gourdcarcucB1015
CsaV3_2G031030Cucumber (Gy14) v1cgycucB247
CsaV3_2G031030Cucurbita maxima (Rimu)cmacucB0192
CsaV3_2G031030Cucurbita maxima (Rimu)cmacucB0927
CsaV3_2G031030Cucurbita moschata (Rifu)cmocucB0176
CsaV3_2G031030Cucurbita moschata (Rifu)cmocucB0919
CsaV3_2G031030Cucurbita pepo (Zucchini)cpecucB0107
CsaV3_2G031030Cucurbita pepo (Zucchini)cpecucB1004
CsaV3_2G031030Bottle gourd (USVL1VR-Ls)cuclsiB152
CsaV3_2G031030Melon (DHL92) v3.5.1cucmeB124
CsaV3_2G031030Melon (DHL92) v3.6.1cucmedB118
CsaV3_2G031030Watermelon (Charleston Gray)cucwcgB173
CsaV3_2G031030Watermelon (97103) v1cucwmB121
CsaV3_2G031030Watermelon (97103) v2cucwmbB160
CsaV3_2G031030Wax gourdcucwgoB172