CsaV3_2G030900 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G030900
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 20336623 .. 20336884 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCGTAATTTTCATTTATTTTTCAACTAGGTCTAATTAAGGAACGGAAAAGACAGTTTTACCCTTGTATCTAGTTCTCCTTCTCCGATTATCCACAGACTCGGCGGCAGCGCCCCAAAATTCCTCCGTCTCTCTTAGTTTCTCTCCTCCGCCGTCTTTCTATCTTTCTCTACTAATTCGTTTCTCCTCTCTTTCACCCGCTCTTTACAGAACTTCAGCGGCTTCCTCGCTCCATCGCAAGAAACTTAAAACCGACTGA

mRNA sequence

ATGCAGCACTCGGCGGCAGCGCCCCAAAATTCCTCCGTCTCTCTTAGTTTCTCTCCTCCGCCGTCTTTCTATCTTTCTCTACTAATTCGTTTCTCCTCTCTTTCACCCGCTCTTTACAGAACTTCAGCGGCTTCCTCGCTCCATCGCAAGAAACTTAAAACCGACTGA

Coding sequence (CDS)

ATGCAGCACTCGGCGGCAGCGCCCCAAAATTCCTCCGTCTCTCTTAGTTTCTCTCCTCCGCCGTCTTTCTATCTTTCTCTACTAATTCGTTTCTCCTCTCTTTCACCCGCTCTTTACAGAACTTCAGCGGCTTCCTCGCTCCATCGCAAGAAACTTAAAACCGACTGA

Protein sequence

MQHSAAAPQNSSVSLSFSPPPSFYLSLLIRFSSLSPALYRTSAASSLHRKKLKTD
Homology
[Close]
BLAST of CsaV3_2G030900 vs. NCBI nr
Match: KGN62819.1 (hypothetical protein Csa_2G374610 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-19
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MQHSAAAPQNSSVSLSFSPPPSFYLSLLIRFSSLSPALYRTSAASSLHRKKLKTD 56
          MQHSAAAPQNSSVSLSFSPPPSFYLSLLIRFSSLSPALYRTSAASSLHRKKLKTD
Sbjct: 1  MQHSAAAPQNSSVSLSFSPPPSFYLSLLIRFSSLSPALYRTSAASSLHRKKLKTD 55

[Close]
BLAST of CsaV3_2G030900 vs. TrEMBL
Match: tr|A0A0A0LP61|A0A0A0LP61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374610 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.6e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MQHSAAAPQNSSVSLSFSPPPSFYLSLLIRFSSLSPALYRTSAASSLHRKKLKTD 56
          MQHSAAAPQNSSVSLSFSPPPSFYLSLLIRFSSLSPALYRTSAASSLHRKKLKTD
Sbjct: 1  MQHSAAAPQNSSVSLSFSPPPSFYLSLLIRFSSLSPALYRTSAASSLHRKKLKTD 55

The following BLAST results are available for this feature:
BLAST of CsaV3_2G030900 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62819.11.3e-19100.00hypothetical protein Csa_2G374610 [Cucumis sativus][more]
BLAST of CsaV3_2G030900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G030900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G030900 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LP61|A0A0A0LP61_CUCSA8.6e-20100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374610 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G030900.1CsaV3_2G030900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G030900CsGy2G022040Cucumber (Gy14) v2cgybcucB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G030900Wax gourdcucwgoB172
CsaV3_2G030900Cucumber (Chinese Long) v3cuccucB074
CsaV3_2G030900Silver-seed gourdcarcucB0065
CsaV3_2G030900Silver-seed gourdcarcucB1015
CsaV3_2G030900Cucumber (Gy14) v2cgybcucB112
CsaV3_2G030900Cucumber (Gy14) v1cgycucB247
CsaV3_2G030900Cucumber (Gy14) v1cgycucB484
CsaV3_2G030900Cucurbita maxima (Rimu)cmacucB0014
CsaV3_2G030900Cucurbita maxima (Rimu)cmacucB0192
CsaV3_2G030900Cucurbita maxima (Rimu)cmacucB0927
CsaV3_2G030900Cucurbita moschata (Rifu)cmocucB0003
CsaV3_2G030900Cucurbita moschata (Rifu)cmocucB0176
CsaV3_2G030900Cucurbita moschata (Rifu)cmocucB0919
CsaV3_2G030900Cucurbita pepo (Zucchini)cpecucB0107
CsaV3_2G030900Cucurbita pepo (Zucchini)cpecucB0956
CsaV3_2G030900Cucurbita pepo (Zucchini)cpecucB1004
CsaV3_2G030900Wild cucumber (PI 183967)cpicucB081
CsaV3_2G030900Wild cucumber (PI 183967)cpicucB140
CsaV3_2G030900Bottle gourd (USVL1VR-Ls)cuclsiB133
CsaV3_2G030900Bottle gourd (USVL1VR-Ls)cuclsiB152
CsaV3_2G030900Melon (DHL92) v3.5.1cucmeB124
CsaV3_2G030900Melon (DHL92) v3.5.1cucmeB134
CsaV3_2G030900Melon (DHL92) v3.6.1cucmedB118
CsaV3_2G030900Melon (DHL92) v3.6.1cucmedB126
CsaV3_2G030900Watermelon (Charleston Gray)cucwcgB118
CsaV3_2G030900Watermelon (Charleston Gray)cucwcgB173
CsaV3_2G030900Watermelon (97103) v1cucwmB121
CsaV3_2G030900Watermelon (97103) v1cucwmB173
CsaV3_2G030900Watermelon (97103) v2cucwmbB112
CsaV3_2G030900Watermelon (97103) v2cucwmbB160