CsaV3_2G030680 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G030680
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 20181176 .. 20181451 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGGTGGCATGGCATATGGTTCAGCTCCAATATGCTGTTTATTGTCCTTGATCATGGGAATCCGAAGCAGCAGTGTTGGGGAAAAAACCTTAAAGACTGCATGCAATGCTTTGAAGAATCTGGTGCATTTCATTTTAGATGCCTGGCACTCGAACCTTCACAGCTTCCCATTTTTAGAAGATGGGAGATTCTTTGTGAAGGAACTGCTCATGCGGTCGTTTCTGGGGTGAATGCAATCTACACTTCCAAGACCTTCAATCTTGCAGTTTAA

mRNA sequence

ATGGCTTGGTGGCATGGCATATGGTTCAGCTCCAATATGCTGTTTATTGTCCTTGATCATGGGAATCCGAAGCAGCAGTGTTGGGGAAAAAACCTTAAAGACTGCATGCAATGCTTTGAAGAATCTGGTGCATTTCATTTTAGATGCCTGGCACTCGAACCTTCACAGCTTCCCATTTTTAGAAGATGGGAGATTCTTTGTGAAGGAACTGCTCATGCGGTCGTTTCTGGGGTGAATGCAATCTACACTTCCAAGACCTTCAATCTTGCAGTTTAA

Coding sequence (CDS)

ATGGCTTGGTGGCATGGCATATGGTTCAGCTCCAATATGCTGTTTATTGTCCTTGATCATGGGAATCCGAAGCAGCAGTGTTGGGGAAAAAACCTTAAAGACTGCATGCAATGCTTTGAAGAATCTGGTGCATTTCATTTTAGATGCCTGGCACTCGAACCTTCACAGCTTCCCATTTTTAGAAGATGGGAGATTCTTTGTGAAGGAACTGCTCATGCGGTCGTTTCTGGGGTGAATGCAATCTACACTTCCAAGACCTTCAATCTTGCAGTTTAA

Protein sequence

MAWWHGIWFSSNMLFIVLDHGNPKQQCWGKNLKDCMQCFEESGAFHFRCLALEPSQLPIFRRWEILCEGTAHAVVSGVNAIYTSKTFNLAV

Homology

[Close]

BLAST of CsaV3_2G030680 vs. NCBI nr
Match: KGN62795.1 (hypothetical protein Csa_2G373390 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 5.2e-50
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MAWWHGIWFSSNMLFIVLDHGNPKQQCWGKNLKDCMQCFEESGAFHFRCLALEPSQLPIF 60
          MAWWHGIWFSSNMLFIVLDHGNPKQQCWGKNLKDCMQCFEESGAFHFRCLALEPSQLPIF
Sbjct: 1  MAWWHGIWFSSNMLFIVLDHGNPKQQCWGKNLKDCMQCFEESGAFHFRCLALEPSQLPIF 60

Query: 61 RRWEILCEGTAHAVVSGVNAIYTSKTFNLAV 92
          RRWEILCEGTAHAVVSGVNAIYTSKTFNLAV
Sbjct: 61 RRWEILCEGTAHAVVSGVNAIYTSKTFNLAV 91

[Close]

BLAST of CsaV3_2G030680 vs. TrEMBL
Match: tr|A0A0A0LLH3|A0A0A0LLH3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G373390 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-50
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MAWWHGIWFSSNMLFIVLDHGNPKQQCWGKNLKDCMQCFEESGAFHFRCLALEPSQLPIF 60
          MAWWHGIWFSSNMLFIVLDHGNPKQQCWGKNLKDCMQCFEESGAFHFRCLALEPSQLPIF
Sbjct: 1  MAWWHGIWFSSNMLFIVLDHGNPKQQCWGKNLKDCMQCFEESGAFHFRCLALEPSQLPIF 60

Query: 61 RRWEILCEGTAHAVVSGVNAIYTSKTFNLAV 92
          RRWEILCEGTAHAVVSGVNAIYTSKTFNLAV
Sbjct: 61 RRWEILCEGTAHAVVSGVNAIYTSKTFNLAV 91

The following BLAST results are available for this feature:

BLAST of CsaV3_2G030680 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62795.1	5.2e-50	100.00	hypothetical protein Csa_2G373390 [Cucumis sativus]	[more]

BLAST of CsaV3_2G030680 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G030680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G030680 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLH3\|A0A0A0LLH3_CUCSA	3.5e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G373390 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G030680.1	CsaV3_2G030680.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G030680	CSPI02G22050	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G030680	CmaCh05G005810	Cucurbita maxima (Rimu)	cmacucB0927
CsaV3_2G030680	Lsi08G010660	Bottle gourd (USVL1VR-Ls)	cuclsiB152

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G030680	Cucumber (Chinese Long) v3	cuccucB074
CsaV3_2G030680	Silver-seed gourd	carcucB0065
CsaV3_2G030680	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G030680	Cucumber (Gy14) v2	cgybcucB112
CsaV3_2G030680	Cucumber (Gy14) v1	cgycucB247
CsaV3_2G030680	Cucumber (Gy14) v1	cgycucB484
CsaV3_2G030680	Cucurbita maxima (Rimu)	cmacucB0014
CsaV3_2G030680	Cucurbita maxima (Rimu)	cmacucB0192
CsaV3_2G030680	Cucurbita moschata (Rifu)	cmocucB0003
CsaV3_2G030680	Cucurbita moschata (Rifu)	cmocucB0176
CsaV3_2G030680	Cucurbita moschata (Rifu)	cmocucB0919
CsaV3_2G030680	Cucurbita pepo (Zucchini)	cpecucB0107
CsaV3_2G030680	Cucurbita pepo (Zucchini)	cpecucB0956
CsaV3_2G030680	Cucurbita pepo (Zucchini)	cpecucB1004
CsaV3_2G030680	Wild cucumber (PI 183967)	cpicucB140
CsaV3_2G030680	Bottle gourd (USVL1VR-Ls)	cuclsiB133
CsaV3_2G030680	Melon (DHL92) v3.5.1	cucmeB124
CsaV3_2G030680	Melon (DHL92) v3.5.1	cucmeB134
CsaV3_2G030680	Melon (DHL92) v3.6.1	cucmedB118
CsaV3_2G030680	Melon (DHL92) v3.6.1	cucmedB126
CsaV3_2G030680	Watermelon (Charleston Gray)	cucwcgB118
CsaV3_2G030680	Watermelon (Charleston Gray)	cucwcgB173
CsaV3_2G030680	Watermelon (97103) v1	cucwmB121
CsaV3_2G030680	Watermelon (97103) v1	cucwmB173
CsaV3_2G030680	Watermelon (97103) v2	cucwmbB112
CsaV3_2G030680	Watermelon (97103) v2	cucwmbB160
CsaV3_2G030680	Wax gourd	cucwgoB172