CsaV3_2G030620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G030620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 20153236 .. 20153830 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGAAAAAACCCCCCGCTCAATCAATCTCCCACTGAAACCCTAGAAATCGCCCAGCAAAAACACGAACGGAGAAGGTAAGATTGAGGTGTTTTTTTCTTTTGTAAGAACAAATGAGAGAGAAAGAGGGAAGGAAGGAAGAGGCCTTTACTTATTTCCTGGACGACTAAAAATGACACAGAAATATTCCAAAACGGCTTGAGCTCAATACGCTCTTCCACGTGTCATTAACTCATTCGCTCAACCCTATCGTCAACTCTCTTTTTTGACTTTTCCTTGTTTTCCCGCGCAGGGGTTGGCACGTGTGGAGGTTAATCGTGGTACTTTGTCACATTCATCATTAAATCATAATGAACCCTACTCCTATTCCAATACCGTGAAAACCACTCGCTATTACCAAACGACGGCGTTTCTAAAGGAATCCGTCAAATCCGTCGTTTTCTTGTCCGAGCGAGTGTCGTTCAAGCGCCTGCGTGACAGAGATTCATTTACGGAGATGGGGTGTGATAATATGTTTATGTTTAGGGATGTAGTTTTGTCACCGACCAATGAGGAGAAGACAGGTAGGATATTGGTCAAGGTTTTTGACTAA

mRNA sequence

ATGGTGAGAAAAAACCCCCCGCTCAATCAATCTCCCACTGAAACCCTAGAAATCGCCCAGCAAAAACACGAACGGAGAAGAAATATTCCAAAACGGCTTGAGCTCAATACGCTCTTCCACGTGTCATTAACTCATTCGCTCAACCCTATCGGGTTGGCACGTGTGGAGGTTAATCGTGGTACTTTGTCACATTCATCATTAAATCATAATGAACCCTACTCCTATTCCAATACCGTGAAAACCACTCGCTATTACCAAACGACGGCGTTTCTAAAGGAATCCGTCAAATCCGTCGTTTTCTTGTCCGAGCGAGTGTCGTTCAAGCGCCTGCGTGACAGAGATTCATTTACGGAGATGGGGTGTGATAATATGTTTATGTTTAGGGATGTAGTTTTGTCACCGACCAATGAGGAGAAGACAGGTAGGATATTGGTCAAGGTTTTTGACTAA

Coding sequence (CDS)

ATGGTGAGAAAAAACCCCCCGCTCAATCAATCTCCCACTGAAACCCTAGAAATCGCCCAGCAAAAACACGAACGGAGAAGAAATATTCCAAAACGGCTTGAGCTCAATACGCTCTTCCACGTGTCATTAACTCATTCGCTCAACCCTATCGGGTTGGCACGTGTGGAGGTTAATCGTGGTACTTTGTCACATTCATCATTAAATCATAATGAACCCTACTCCTATTCCAATACCGTGAAAACCACTCGCTATTACCAAACGACGGCGTTTCTAAAGGAATCCGTCAAATCCGTCGTTTTCTTGTCCGAGCGAGTGTCGTTCAAGCGCCTGCGTGACAGAGATTCATTTACGGAGATGGGGTGTGATAATATGTTTATGTTTAGGGATGTAGTTTTGTCACCGACCAATGAGGAGAAGACAGGTAGGATATTGGTCAAGGTTTTTGACTAA

Protein sequence

MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRGTLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMGCDNMFMFRDVVLSPTNEEKTGRILVKVFD
Homology
[Close]
BLAST of CsaV3_2G030620 vs. NCBI nr
Match: KGN62789.1 (hypothetical protein Csa_2G372840 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 1.4e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG 60
           MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG
Sbjct: 1   MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG 60

Query: 61  TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG 120
           TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG
Sbjct: 61  TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG 120

Query: 121 CDNMFMFRDVVLSPTNEEKTGRILVKVFD 150
           CDNMFMFRDVVLSPTNEEKTGRILVKVFD
Sbjct: 121 CDNMFMFRDVVLSPTNEEKTGRILVKVFD 149

[Close]
BLAST of CsaV3_2G030620 vs. TrEMBL
Match: tr|A0A0A0LP26|A0A0A0LP26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372840 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 9.2e-77
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG 60
           MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG
Sbjct: 1   MVRKNPPLNQSPTETLEIAQQKHERRRNIPKRLELNTLFHVSLTHSLNPIGLARVEVNRG 60

Query: 61  TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG 120
           TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG
Sbjct: 61  TLSHSSLNHNEPYSYSNTVKTTRYYQTTAFLKESVKSVVFLSERVSFKRLRDRDSFTEMG 120

Query: 121 CDNMFMFRDVVLSPTNEEKTGRILVKVFD 150
           CDNMFMFRDVVLSPTNEEKTGRILVKVFD
Sbjct: 121 CDNMFMFRDVVLSPTNEEKTGRILVKVFD 149

The following BLAST results are available for this feature:
BLAST of CsaV3_2G030620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62789.11.4e-76100.00hypothetical protein Csa_2G372840 [Cucumis sativus][more]
BLAST of CsaV3_2G030620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G030620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G030620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LP26|A0A0A0LP26_CUCSA9.2e-77100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372840 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G030620.1CsaV3_2G030620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G030620CSPI02G21990Wild cucumber (PI 183967)cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G030620Watermelon (97103) v2cucwmbB112
CsaV3_2G030620Watermelon (97103) v2cucwmbB160
CsaV3_2G030620Wax gourdcucwgoB172
CsaV3_2G030620Cucumber (Chinese Long) v3cuccucB074
CsaV3_2G030620Silver-seed gourdcarcucB0065
CsaV3_2G030620Silver-seed gourdcarcucB0861
CsaV3_2G030620Cucumber (Gy14) v2cgybcucB065
CsaV3_2G030620Cucumber (Gy14) v2cgybcucB112
CsaV3_2G030620Cucumber (Gy14) v1cgycucB247
CsaV3_2G030620Cucumber (Gy14) v1cgycucB484
CsaV3_2G030620Cucurbita maxima (Rimu)cmacucB0014
CsaV3_2G030620Cucurbita maxima (Rimu)cmacucB0192
CsaV3_2G030620Cucurbita maxima (Rimu)cmacucB0927
CsaV3_2G030620Cucurbita moschata (Rifu)cmocucB0003
CsaV3_2G030620Cucurbita moschata (Rifu)cmocucB0176
CsaV3_2G030620Cucurbita moschata (Rifu)cmocucB0919
CsaV3_2G030620Cucurbita pepo (Zucchini)cpecucB0107
CsaV3_2G030620Cucurbita pepo (Zucchini)cpecucB0956
CsaV3_2G030620Cucurbita pepo (Zucchini)cpecucB1004
CsaV3_2G030620Wild cucumber (PI 183967)cpicucB140
CsaV3_2G030620Bottle gourd (USVL1VR-Ls)cuclsiB133
CsaV3_2G030620Bottle gourd (USVL1VR-Ls)cuclsiB152
CsaV3_2G030620Melon (DHL92) v3.5.1cucmeB124
CsaV3_2G030620Melon (DHL92) v3.5.1cucmeB134
CsaV3_2G030620Melon (DHL92) v3.6.1cucmedB118
CsaV3_2G030620Melon (DHL92) v3.6.1cucmedB126
CsaV3_2G030620Watermelon (Charleston Gray)cucwcgB118
CsaV3_2G030620Watermelon (Charleston Gray)cucwcgB173
CsaV3_2G030620Watermelon (97103) v1cucwmB121
CsaV3_2G030620Watermelon (97103) v1cucwmB173