CsaV3_2G026720 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G026720
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	protein MEI2-like 7
Location	chr2 : 18310258 .. 18310697 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCAAGCCATTGAATCCCTATGCTGACCCTTTTCTCTCTTCTCCACCTACTCTTCTTCCTCCACTCCCTCCTTCACCGCATGTTCTTGACTATACAAATTTCTATTACCCACGTTCCACTTCCACTTACCTTTGGCAGCTTCATACTTATTCTGCTGTTAGCTGCTACAATGCTTGGCCCCAGGTCATGTGCCCGCCGTATCAAGCGGCTGTGGGTTTTTCCGGTACCGTTATGGCGGATTCTAAGAATATTGGCAAAGCTGATGTTGGTAAGTTTAGACGAGAGTTTGTTGTCTCCGGTGGCGCGCGCAGAGAGTTAGTCAAATCTATGCCGCAATGGGTAGAGAGGAAAATCGATAACGACGCCGGTGGTTGCGGCGGCGACGGCGTAGACCCAGTCGAGAAAACCCTTCCCCTTGCTTGGATATCACAACG

mRNA sequence

ATGGCCTCCAAGCCATTGAATCCCTATGCTGACCCTTTTCTCTCTTCTCCACCTACTCTTCTTCCTCCACTCCCTCCTTCACCGCATGTTCTTGACTATACAAATTTCTATTACCCACGTTCCACTTCCACTTACCTTTGGCAGCTTCATACTTATTCTGCTGTTAGCTGCTACAATGCTTGGCCCCAGGTCATGTGCCCGCCGTATCAAGCGGCTGTGGGTTTTTCCGGTACCGTTATGGCGGATTCTAAGAATATTGGCAAAGCTGATGTTGGTAAGTTTAGACGAGAGTTTGTTGTCTCCGGTGGCGCGCGCAGAGAGTTAGTCAAATCTATGCCGCAATGGGTAGAGAGGAAAATCGATAACGACGCCGGTGGTTGCGGCGGCGACGGCGTAGACCCAGTCGAGAAAACCCTTCCCCTTGCTTGGATATCACAACG

Coding sequence (CDS)

ATGGCCTCCAAGCCATTGAATCCCTATGCTGACCCTTTTCTCTCTTCTCCACCTACTCTTCTTCCTCCACTCCCTCCTTCACCGCATGTTCTTGACTATACAAATTTCTATTACCCACGTTCCACTTCCACTTACCTTTGGCAGCTTCATACTTATTCTGCTGTTAGCTGCTACAATGCTTGGCCCCAGGTCATGTGCCCGCCGTATCAAGCGGCTGTGGGTTTTTCCGGTACCGTTATGGCGGATTCTAAGAATATTGGCAAAGCTGATGTTGGTAAGTTTAGACGAGAGTTTGTTGTCTCCGGTGGCGCGCGCAGAGAGTTAGTCAAATCTATGCCGCAATGGGTAGAGAGGAAAATCGATAACGACGCCGGTGGTTGCGGCGGCGACGGCGTAGACCCAGTCGAGAAAACCCTTCCCCTTGCTTGGATATCACAACG

Protein sequence

MASKPLNPYADPFLSSPPTLLPPLPPSPHVLDYTNFYYPRSTSTYLWQLHTYSAVSCYNAWPQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKIDNDAGGCGGDGVDPVEKTLPLAWISQX

Homology

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BLAST of CsaV3_2G026720 vs. NCBI nr
Match: KGN50977.1 (hypothetical protein Csa_5G381820 [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 4.7e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MASKPLNPYADPFLSSPPTLLPPLPPSPHVLDYTNFYYPRSTSTYLWQLHTYSAVSCYNA 60
           MASKPLNPYADPFLSSPPTLLPPLPPSPHVLDYTNFYYPRSTSTYLWQLHTYSAVSCYNA
Sbjct: 1   MASKPLNPYADPFLSSPPTLLPPLPPSPHVLDYTNFYYPRSTSTYLWQLHTYSAVSCYNA 60

Query: 61  WPQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKI 120
           WPQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKI
Sbjct: 61  WPQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKI 120

Query: 121 DNDAGGCGGDGVDPVEKTLP 141
           DNDAGGCGGDGVDPVEKTLP
Sbjct: 121 DNDAGGCGGDGVDPVEKTLP 140

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BLAST of CsaV3_2G026720 vs. NCBI nr
Match: XP_011656209.1 (PREDICTED: protein terminal ear1 homolog [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 4.7e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MASKPLNPYADPFLSSPPTLLPPLPPSPHVLDYTNFYYPRSTSTYLWQLHTYSAVSCYNA 60
           MASKPLNPYADPFLSSPPTLLPPLPPSPHVLDYTNFYYPRSTSTYLWQLHTYSAVSCYNA
Sbjct: 1   MASKPLNPYADPFLSSPPTLLPPLPPSPHVLDYTNFYYPRSTSTYLWQLHTYSAVSCYNA 60

Query: 61  WPQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKI 120
           WPQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKI
Sbjct: 61  WPQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKI 120

Query: 121 DNDAGGCGGDGVDPVEKTLP 141
           DNDAGGCGGDGVDPVEKTLP
Sbjct: 121 DNDAGGCGGDGVDPVEKTLP 140

[Close]

BLAST of CsaV3_2G026720 vs. NCBI nr
Match: XP_008465820.1 (PREDICTED: protein MEI2-like 7 [Cucumis melo])

HSP 1 Score: 246.1 bits (627), Expect = 7.3e-62
Identity = 114/145 (78.62%), Postives = 126/145 (86.90%), Query Frame = 0


Query: 1   MASKPLNPYADPFLSSPPTLLPPLPPSPHVLDYTNFYYPRSTSTYLWQLHTYSAVSCYNA 60
           MA KPLNPYADPFLSSPPT L     SPH + Y NF+YPR++STYLWQLHTY A+SCYNA
Sbjct: 44  MAPKPLNPYADPFLSSPPTFLXXXXXSPHAVGYGNFFYPRASSTYLWQLHTYPAISCYNA 103

Query: 61  WPQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKI 120
           WPQV+CPPYQAAVGF+G+VM DSKN GKADVGKFRREFVVSGG RREL+KS PQWVE+KI
Sbjct: 104 WPQVVCPPYQAAVGFAGSVMTDSKNTGKADVGKFRREFVVSGGPRRELIKSPPQWVEKKI 163

Query: 121 DNDAGGCGGDGVDPVEKTLPLAWIS 146
            NDAG CGGDGVDPVEKTLP + I+
Sbjct: 164 GNDAGVCGGDGVDPVEKTLPFSDIT 188

[Close]

BLAST of CsaV3_2G026720 vs. NCBI nr
Match: XP_023551556.1 (protein MEI2-like 7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 85/144 (59.03%), Postives = 98/144 (68.06%), Query Frame = 0


Query: 3   SKPLNPYADPFLSSPPTLLPPLPPSPH-VLDYTNFYYPRSTSTYLWQLHTYSAVSCYNAW 62
           SKPLNP ADPFLS+PPT LP  PPSPH V  Y N YYPR+TS Y WQ H++ AVSCYNAW
Sbjct: 42  SKPLNPNADPFLSAPPTFLP--PPSPHFVSGYGNLYYPRATSAYAWQFHSFPAVSCYNAW 101

Query: 63  PQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKID 122
           PQV+ P YQ AVGF G V+ADS         K  REFVVS G  R+ +K  PQWVE+KI 
Sbjct: 102 PQVVWPSYQPAVGFGGGVVADS---------KLGREFVVSSGQSRD-IKCPPQWVEKKIS 161

Query: 123 NDAGGCGGDGVDPVEKTLPLAWIS 146
           +D      D  DPVEKT+P + I+
Sbjct: 162 SDEDN-NADVDDPVEKTVPCSGIT 172

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BLAST of CsaV3_2G026720 vs. NCBI nr
Match: XP_022993222.1 (protein terminal ear1-like [Cucurbita maxima])

HSP 1 Score: 153.3 bits (386), Expect = 6.4e-34
Identity = 84/144 (58.33%), Postives = 96/144 (66.67%), Query Frame = 0


Query: 3   SKPLNPYADPFLSSPPTLLPPLPPSPH-VLDYTNFYYPRSTSTYLWQLHTYSAVSCYNAW 62
           SKPLNP ADPFLS+PPT LP  PPSPH V  Y N YYPR+TS Y WQ H++ AVSCYNAW
Sbjct: 42  SKPLNPDADPFLSAPPTFLP--PPSPHFVSGYGNLYYPRATSAYAWQFHSFPAVSCYNAW 101

Query: 63  PQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKID 122
           PQV+ P YQ AVGF G V+ADS         K  REFVVS G  R+ +K   QW E+KI 
Sbjct: 102 PQVVWPSYQPAVGFGGCVVADS---------KLGREFVVSSGPNRD-IKCPTQWAEKKIS 161

Query: 123 NDAGGCGGDGVDPVEKTLPLAWIS 146
            D     GD  DPVEKT+P + I+
Sbjct: 162 GDEDN-NGDVDDPVEKTVPCSGIT 172

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BLAST of CsaV3_2G026720 vs. TrEMBL
Match: tr|A0A0A0KRH5|A0A0A0KRH5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381820 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.1e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MASKPLNPYADPFLSSPPTLLPPLPPSPHVLDYTNFYYPRSTSTYLWQLHTYSAVSCYNA 60
           MASKPLNPYADPFLSSPPTLLPPLPPSPHVLDYTNFYYPRSTSTYLWQLHTYSAVSCYNA
Sbjct: 1   MASKPLNPYADPFLSSPPTLLPPLPPSPHVLDYTNFYYPRSTSTYLWQLHTYSAVSCYNA 60

Query: 61  WPQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKI 120
           WPQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKI
Sbjct: 61  WPQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKI 120

Query: 121 DNDAGGCGGDGVDPVEKTLP 141
           DNDAGGCGGDGVDPVEKTLP
Sbjct: 121 DNDAGGCGGDGVDPVEKTLP 140

[Close]

BLAST of CsaV3_2G026720 vs. TrEMBL
Match: tr|A0A1S3CPR7|A0A1S3CPR7_CUCME (protein MEI2-like 7 OS=Cucumis melo OX=3656 GN=LOC103503409 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 4.8e-62
Identity = 114/145 (78.62%), Postives = 126/145 (86.90%), Query Frame = 0


Query: 1   MASKPLNPYADPFLSSPPTLLPPLPPSPHVLDYTNFYYPRSTSTYLWQLHTYSAVSCYNA 60
           MA KPLNPYADPFLSSPPT L     SPH + Y NF+YPR++STYLWQLHTY A+SCYNA
Sbjct: 44  MAPKPLNPYADPFLSSPPTFLXXXXXSPHAVGYGNFFYPRASSTYLWQLHTYPAISCYNA 103

Query: 61  WPQVMCPPYQAAVGFSGTVMADSKNIGKADVGKFRREFVVSGGARRELVKSMPQWVERKI 120
           WPQV+CPPYQAAVGF+G+VM DSKN GKADVGKFRREFVVSGG RREL+KS PQWVE+KI
Sbjct: 104 WPQVVCPPYQAAVGFAGSVMTDSKNTGKADVGKFRREFVVSGGPRRELIKSPPQWVEKKI 163

Query: 121 DNDAGGCGGDGVDPVEKTLPLAWIS 146
            NDAG CGGDGVDPVEKTLP + I+
Sbjct: 164 GNDAGVCGGDGVDPVEKTLPFSDIT 188

The following BLAST results are available for this feature:

BLAST of CsaV3_2G026720 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50977.1	4.7e-77	100.00	hypothetical protein Csa_5G381820 [Cucumis sativus]	[more]
XP_011656209.1	4.7e-77	100.00	PREDICTED: protein terminal ear1 homolog [Cucumis sativus]	[more]
XP_008465820.1	7.3e-62	78.62	PREDICTED: protein MEI2-like 7 [Cucumis melo]	[more]
XP_023551556.1	1.3e-34	59.03	protein MEI2-like 7 [Cucurbita pepo subsp. pepo]	[more]
XP_022993222.1	6.4e-34	58.33	protein terminal ear1-like [Cucurbita maxima]	[more]

BLAST of CsaV3_2G026720 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G026720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G026720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRH5\|A0A0A0KRH5_CUCSA	3.1e-77	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381820 PE=4 SV=1	[more]
tr\|A0A1S3CPR7\|A0A1S3CPR7_CUCME	4.8e-62	78.62	protein MEI2-like 7 OS=Cucumis melo OX=3656 GN=LOC103503409 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G026720.1	CsaV3_2G026720.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G026720	Silver-seed gourd	carcucB0093
CsaV3_2G026720	Silver-seed gourd	carcucB0209
CsaV3_2G026720	Silver-seed gourd	carcucB0809
CsaV3_2G026720	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G026720	Cucumber (Gy14) v2	cgybcucB167
CsaV3_2G026720	Cucumber (Gy14) v1	cgycucB535
CsaV3_2G026720	Cucurbita maxima (Rimu)	cmacucB0015
CsaV3_2G026720	Cucurbita maxima (Rimu)	cmacucB0203
CsaV3_2G026720	Cucurbita maxima (Rimu)	cmacucB0524
CsaV3_2G026720	Cucurbita maxima (Rimu)	cmacucB0926
CsaV3_2G026720	Cucurbita moschata (Rifu)	cmocucB0004
CsaV3_2G026720	Cucurbita moschata (Rifu)	cmocucB0186
CsaV3_2G026720	Cucurbita moschata (Rifu)	cmocucB0510
CsaV3_2G026720	Cucurbita moschata (Rifu)	cmocucB0918
CsaV3_2G026720	Cucurbita pepo (Zucchini)	cpecucB0106
CsaV3_2G026720	Cucurbita pepo (Zucchini)	cpecucB0675
CsaV3_2G026720	Cucurbita pepo (Zucchini)	cpecucB0957
CsaV3_2G026720	Cucurbita pepo (Zucchini)	cpecucB1013
CsaV3_2G026720	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G026720	Wild cucumber (PI 183967)	cpicucB206
CsaV3_2G026720	Bottle gourd (USVL1VR-Ls)	cuclsiB129
CsaV3_2G026720	Bottle gourd (USVL1VR-Ls)	cuclsiB155
CsaV3_2G026720	Melon (DHL92) v3.5.1	cucmeB124
CsaV3_2G026720	Melon (DHL92) v3.5.1	cucmeB150
CsaV3_2G026720	Melon (DHL92) v3.6.1	cucmedB118
CsaV3_2G026720	Melon (DHL92) v3.6.1	cucmedB143
CsaV3_2G026720	Watermelon (Charleston Gray)	cucwcgB150
CsaV3_2G026720	Watermelon (Charleston Gray)	cucwcgB176
CsaV3_2G026720	Watermelon (97103) v1	cucwmB124
CsaV3_2G026720	Watermelon (97103) v1	cucwmB138
CsaV3_2G026720	Watermelon (97103) v2	cucwmbB137
CsaV3_2G026720	Watermelon (97103) v2	cucwmbB164
CsaV3_2G026720	Wax gourd	cucwgoB169
CsaV3_2G026720	Wax gourd	cucwgoB204
CsaV3_2G026720	Cucumber (Chinese Long) v3	cuccucB081
CsaV3_2G026720	Cucumber (Chinese Long) v3	cuccucB100