CsaV3_2G026520 (gene) Cucumber (Chinese Long) v3

NameCsaV3_2G026520
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 18142490 .. 18142734 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCGAGTCGCCCTAACCCTCAAAGCATCTGAGGTTGACCCTTCTACCACCATCGTGATTGCCAAGATTATCGGTATCAGTCATATCCACACAGTAATGAGAAAAAATTTCAGGCTGAGTCAAGAGAAATTTTATTTTTGTTTCTTACAGTAAAGTACCAAAGGAGACCATCCAAATCTAAAGTGGGGGATAAGCCACCATCCAAATCTAAGCCAAGGGTTACGAAAAAGATTTATCAATGA

mRNA sequence

ATGATTCGAGTCGCCCTAACCCTCAAAGCATCTGAGGTTGACCCTTCTACCACCATCGTGATTGCCAAGATTATCGTAAAGTACCAAAGGAGACCATCCAAATCTAAAGTGGGGGATAAGCCACCATCCAAATCTAAGCCAAGGGTTACGAAAAAGATTTATCAATGA

Coding sequence (CDS)

ATGATTCGAGTCGCCCTAACCCTCAAAGCATCTGAGGTTGACCCTTCTACCACCATCGTGATTGCCAAGATTATCGTAAAGTACCAAAGGAGACCATCCAAATCTAAAGTGGGGGATAAGCCACCATCCAAATCTAAGCCAAGGGTTACGAAAAAGATTTATCAATGA

Protein sequence

MIRVALTLKASEVDPSTTIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ
BLAST of CsaV3_2G026520 vs. NCBI nr
Match: KGN62488.1 (hypothetical protein Csa_2G356620 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-19
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MIRVALTLKASEVDPSTTIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ 56
          MIRVALTLKASEVDPSTTIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ
Sbjct: 1  MIRVALTLKASEVDPSTTIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ 55

BLAST of CsaV3_2G026520 vs. TrEMBL
Match: tr|A0A0A0LL63|A0A0A0LL63_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356620 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-19
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MIRVALTLKASEVDPSTTIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ 56
          MIRVALTLKASEVDPSTTIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ
Sbjct: 1  MIRVALTLKASEVDPSTTIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN62488.12.2e-19100.00hypothetical protein Csa_2G356620 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LL63|A0A0A0LL63_CUCSA1.5e-19100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356620 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G026520.1CsaV3_2G026520.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..46

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G026520CSPI02G18930Wild cucumber (PI 183967)cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G026520Cucumber (Chinese Long) v3cuccucB081
CsaV3_2G026520Cucumber (Chinese Long) v3cuccucB090
CsaV3_2G026520Cucumber (Chinese Long) v3cuccucB100
CsaV3_2G026520Silver-seed gourdcarcucB0093
CsaV3_2G026520Silver-seed gourdcarcucB0209
CsaV3_2G026520Silver-seed gourdcarcucB0433
CsaV3_2G026520Silver-seed gourdcarcucB0809
CsaV3_2G026520Cucumber (Gy14) v2cgybcucB065
CsaV3_2G026520Cucumber (Gy14) v2cgybcucB167
CsaV3_2G026520Cucumber (Gy14) v2cgybcucB262
CsaV3_2G026520Cucumber (Gy14) v2cgybcucB320
CsaV3_2G026520Cucumber (Gy14) v1cgycucB117
CsaV3_2G026520Cucumber (Gy14) v1cgycucB336
CsaV3_2G026520Cucumber (Gy14) v1cgycucB535
CsaV3_2G026520Cucumber (Gy14) v1cgycucB596
CsaV3_2G026520Cucurbita maxima (Rimu)cmacucB0015
CsaV3_2G026520Cucurbita maxima (Rimu)cmacucB0128
CsaV3_2G026520Cucurbita maxima (Rimu)cmacucB0203
CsaV3_2G026520Cucurbita maxima (Rimu)cmacucB0524
CsaV3_2G026520Cucurbita maxima (Rimu)cmacucB0607
CsaV3_2G026520Cucurbita maxima (Rimu)cmacucB0778
CsaV3_2G026520Cucurbita maxima (Rimu)cmacucB0926
CsaV3_2G026520Cucurbita maxima (Rimu)cmacucB1006
CsaV3_2G026520Cucurbita moschata (Rifu)cmocucB0004
CsaV3_2G026520Cucurbita moschata (Rifu)cmocucB0121
CsaV3_2G026520Cucurbita moschata (Rifu)cmocucB0186
CsaV3_2G026520Cucurbita moschata (Rifu)cmocucB0510
CsaV3_2G026520Cucurbita moschata (Rifu)cmocucB0918
CsaV3_2G026520Cucurbita moschata (Rifu)cmocucB0990
CsaV3_2G026520Cucurbita pepo (Zucchini)cpecucB0064
CsaV3_2G026520Cucurbita pepo (Zucchini)cpecucB0106
CsaV3_2G026520Cucurbita pepo (Zucchini)cpecucB0292
CsaV3_2G026520Cucurbita pepo (Zucchini)cpecucB0591
CsaV3_2G026520Cucurbita pepo (Zucchini)cpecucB0675
CsaV3_2G026520Cucurbita pepo (Zucchini)cpecucB0834
CsaV3_2G026520Cucurbita pepo (Zucchini)cpecucB0957
CsaV3_2G026520Cucurbita pepo (Zucchini)cpecucB1013
CsaV3_2G026520Wild cucumber (PI 183967)cpicucB206
CsaV3_2G026520Wild cucumber (PI 183967)cpicucB327
CsaV3_2G026520Wild cucumber (PI 183967)cpicucB386
CsaV3_2G026520Bottle gourd (USVL1VR-Ls)cuclsiB113
CsaV3_2G026520Bottle gourd (USVL1VR-Ls)cuclsiB128
CsaV3_2G026520Bottle gourd (USVL1VR-Ls)cuclsiB129
CsaV3_2G026520Bottle gourd (USVL1VR-Ls)cuclsiB155
CsaV3_2G026520Melon (DHL92) v3.5.1cucmeB109
CsaV3_2G026520Melon (DHL92) v3.5.1cucmeB124
CsaV3_2G026520Melon (DHL92) v3.5.1cucmeB150
CsaV3_2G026520Melon (DHL92) v3.5.1cucmeB157
CsaV3_2G026520Melon (DHL92) v3.6.1cucmedB101
CsaV3_2G026520Melon (DHL92) v3.6.1cucmedB118
CsaV3_2G026520Melon (DHL92) v3.6.1cucmedB143
CsaV3_2G026520Melon (DHL92) v3.6.1cucmedB148
CsaV3_2G026520Watermelon (Charleston Gray)cucwcgB128
CsaV3_2G026520Watermelon (Charleston Gray)cucwcgB150
CsaV3_2G026520Watermelon (Charleston Gray)cucwcgB176
CsaV3_2G026520Watermelon (97103) v1cucwmB124
CsaV3_2G026520Watermelon (97103) v1cucwmB138
CsaV3_2G026520Watermelon (97103) v1cucwmB150
CsaV3_2G026520Watermelon (97103) v2cucwmbB102
CsaV3_2G026520Watermelon (97103) v2cucwmbB137
CsaV3_2G026520Watermelon (97103) v2cucwmbB164
CsaV3_2G026520Wax gourdcucwgoB169
CsaV3_2G026520Wax gourdcucwgoB194
CsaV3_2G026520Wax gourdcucwgoB204