CsaV3_2G025550 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G025550
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	LOB domain-containing protein 22-like
Location	chr2 : 17560164 .. 17561659 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACAATTAATAGCATTTTTTTCTAAATAAATTGTTTTTGGAAAATAGAAAATTAAAATTTAACCTAATTGTTTTATTATATATTATTTTAAAGTTAAGAAGCGGAAAATATTTTAAAAAATACCTAATAAGTTGCGATCGCAAAGGAAAAAATCCACTAAGGAAAGTGGTTCAGTTACGTTCTTTCTCTCCTTCTCAGTTTTTTCTTCTCCGACTTTTCATCTGCCATGAATATTCTACAAGATTGCACCGAAACCGTCGCCGACGGAGCCGAAGTCATGGACATCAATTTCCCAACAACCACTCAGGCGCCTGCTTGTGCTGCCTGCAAATTCCATAGAAGAAAATGCTCTGTCGAATGTCCCTTGGCTCCCTATTTTCCTGCTAATCGTCTTCAAGATTTCGAAAACGTACGCAAATTGTTCGGCGTAAAAAACGTCCTCAAAACCCTAGCCGGTTTGGATTCTTATAACAGATTTAAAGCGGCGGAGTGTATGATTTTTGAAGCCAATTGTCGCGCCCTTGATCTCGTCGGTGGTTGTTGCCAAATCATCCCTAGATTGCAGAATGAAATTGCACTTCTAGAGGCTCAGCATCGTCACATTCTCCGTCAGCTCCAAATCTCCCGACAGACGGCGGCGGCTATTTCGCAACTAGGTGCGATTCCTTCGGAATTCGATTCTGATTGTAAGCACGGACTAACTCCTCTTTTGCTTGATTGCGATTATTCTGAAGATTGGATACGAAAAGAACATTGCGACATGAATAATGAAGCTTCTTTTTCCAAAGCCCTAACTAATTAGGGCATTCTTAGTTTTAGATTATAATGTTTCTTTCTTCTTTAGTTTCGATCTTGAAACACAGATAAGATTATGATTTCAATACGTTGCAAACAAAAAAATCTTTAACTTATTTACTTTTGATTTTCTATACTGATTTGTTCATGTTTGGTATGTGTGTTATTATTATTATTCTTTTTATGAAAAACAGAACAAAGAACTACACAATTACGATCATAGAAAATCATACGAAATGAGGAGCAACAAAGACGGAAAGACTCACGCTCTCCACTACTACTACAACTCTATACCTAAAGGTGCATATATGAATATTATTACTATATCATCTATAAACAATTGTTATCCTCCTTGTAGTCTGATGCTTTTCTGATCAAATCATACGTTCGTATAACTCCGTCATTTACTCTCTCCCTCTCTCTCTTTTTTATTTCAATTTCAAAATCTTCCATTAAACCTTCTTCGTATGAATAAAGAAATCATGTGATACTTGCAAAGAAATTTTTTGTCTTTGTTACCATAACTCCAAGACCCACGTACCATCCGATGCTTTGAATCTCCAGACAAGGCCCCCACTTACTTCTTTCCGAAATTCTTGTTCGTAGTTATTTCCTATATGAACAAATTCTATTTGGTAGTAGCTGAGTCCAACTCCAAAGTACAAAAACTTTTAATTCGAAAACATAAATGTTTCTTCAT

mRNA sequence

ATGAATATTCTACAAGATTGCACCGAAACCGTCGCCGACGGAGCCGAAGTCATGGACATCAATTTCCCAACAACCACTCAGGCGCCTGCTTGTGCTGCCTGCAAATTCCATAGAAGAAAATGCTCTGTCGAATGTCCCTTGGCTCCCTATTTTCCTGCTAATCGTCTTCAAGATTTCGAAAACGTACGCAAATTGTTCGGCGTAAAAAACGTCCTCAAAACCCTAGCCGGTTTGGATTCTTATAACAGATTTAAAGCGGCGGAGTGTATGATTTTTGAAGCCAATTGTCGCGCCCTTGATCTCGTCGGTGGTTGTTGCCAAATCATCCCTAGATTGCAGAATGAAATTGCACTTCTAGAGGCTCAGCATCGTCACATTCTCCGTCAGCTCCAAATCTCCCGACAGACGGCGGCGGCTATTTCGCAACTAGGTGCGATTCCTTCGGAATTCGATTCTGATTAA

Coding sequence (CDS)

ATGAATATTCTACAAGATTGCACCGAAACCGTCGCCGACGGAGCCGAAGTCATGGACATCAATTTCCCAACAACCACTCAGGCGCCTGCTTGTGCTGCCTGCAAATTCCATAGAAGAAAATGCTCTGTCGAATGTCCCTTGGCTCCCTATTTTCCTGCTAATCGTCTTCAAGATTTCGAAAACGTACGCAAATTGTTCGGCGTAAAAAACGTCCTCAAAACCCTAGCCGGTTTGGATTCTTATAACAGATTTAAAGCGGCGGAGTGTATGATTTTTGAAGCCAATTGTCGCGCCCTTGATCTCGTCGGTGGTTGTTGCCAAATCATCCCTAGATTGCAGAATGAAATTGCACTTCTAGAGGCTCAGCATCGTCACATTCTCCGTCAGCTCCAAATCTCCCGACAGACGGCGGCGGCTATTTCGCAACTAGGTGCGATTCCTTCGGAATTCGATTCTGATTAA

Protein sequence

MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTAAAISQLGAIPSEFDSD

Homology

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BLAST of CsaV3_2G025550 vs. NCBI nr
Match: XP_011650178.1 (PREDICTED: LOB domain-containing protein 22-like [Cucumis sativus] >KGN62387.1 hypothetical protein Csa_2G351680 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 5.1e-82
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE 60
           MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE
Sbjct: 1   MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE 60

Query: 61  NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE 120
           NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE
Sbjct: 61  NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE 120

Query: 121 AQHRHILRQLQISRQTAAAISQLGAIPSEFDSD 154
           AQHRHILRQLQISRQTAAAISQLGAIPSEFDSD
Sbjct: 121 AQHRHILRQLQISRQTAAAISQLGAIPSEFDSD 153

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BLAST of CsaV3_2G025550 vs. NCBI nr
Match: XP_008444461.1 (PREDICTED: LOB domain-containing protein 22-like [Cucumis melo])

HSP 1 Score: 252.7 bits (644), Expect = 8.2e-64
Identity = 129/156 (82.69%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 1   MNILQDCTETVADGAEVMDINFPTTTQ---APACAACKFHRRKCSVECPLAPYFPANRLQ 60
           MNI QDCTET ADG EV DINFPT  Q   A ACAACKFHRRKCSVECPLAPYFPANRL+
Sbjct: 1   MNIRQDCTETSADGGEVKDINFPTKIQAAAAAACAACKFHRRKCSVECPLAPYFPANRLR 60

Query: 61  DFENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIA 120
           DFENVRKLFGVKNVLK LAGL+  NRFKA ECMIFEANCRA+DL GGC +II +LQ+EIA
Sbjct: 61  DFENVRKLFGVKNVLKILAGLEPDNRFKAVECMIFEANCRAIDLAGGCYKIISKLQSEIA 120

Query: 121 LLEAQHRHILRQLQISRQTAAAISQLGAIPSEFDSD 154
           LLEAQHR IL QLQISRQTAAAISQ GAI SEFDSD
Sbjct: 121 LLEAQHRLILHQLQISRQTAAAISQRGAIRSEFDSD 156

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BLAST of CsaV3_2G025550 vs. NCBI nr
Match: XP_022962555.1 (LOB domain-containing protein 22-like [Cucurbita moschata])

HSP 1 Score: 167.9 bits (424), Expect = 2.6e-38
Identity = 92/154 (59.74%), Postives = 108/154 (70.13%), Query Frame = 0


Query: 1   MNILQDCTETVAD-GAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDF 60
           MNI +D +  VA   A+  + N PT     ACAACKF RRKC+ +CPLAPYFPA R ++F
Sbjct: 1   MNIHRDFSGIVAGVDADYKNQNPPT---MQACAACKFQRRKCTADCPLAPYFPAERFREF 60

Query: 61  ENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALL 120
            NVRKLFGVKNVLKTL  L+   R  A +C+IFEANCRA DL GGC +II ++Q EI LL
Sbjct: 61  RNVRKLFGVKNVLKTLGDLEPSKRRDAVQCIIFEANCRASDLAGGCYKIIAKMQREITLL 120

Query: 121 EAQHRHILRQLQISRQTAAAISQLGAIPSEFDSD 154
           EAQHR +LRQL+  RQTAA      AI SEFD D
Sbjct: 121 EAQHRLVLRQLRFYRQTAAC-----AIRSEFDFD 146

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BLAST of CsaV3_2G025550 vs. NCBI nr
Match: XP_022997547.1 (LOB domain-containing protein 22-like [Cucurbita maxima])

HSP 1 Score: 165.2 bits (417), Expect = 1.7e-37
Identity = 85/139 (61.15%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 1   MNILQDCTETVAD-GAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDF 60
           MNI +D +  VA   A+  ++N PT     ACAACKF RRKC+ +CPLAPYFPA+R ++F
Sbjct: 1   MNIHRDFSGIVAGVDADYKNLNLPT---MQACAACKFQRRKCTADCPLAPYFPADRFREF 60

Query: 61  ENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALL 120
            NVRKLFGVKNVLKTL  L+   R  A +C+IFEANCRA DL GGC +II ++Q EI LL
Sbjct: 61  RNVRKLFGVKNVLKTLGDLEPSKRRDAVQCIIFEANCRANDLAGGCYKIIAKMQREITLL 120

Query: 121 EAQHRHILRQLQISRQTAA 139
           EAQHR +LRQL+  RQTAA
Sbjct: 121 EAQHRLVLRQLRFFRQTAA 136

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BLAST of CsaV3_2G025550 vs. NCBI nr
Match: XP_022132086.1 (LOB domain-containing protein 25-like [Momordica charantia])

HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31
Identity = 79/142 (55.63%), Postives = 96/142 (67.61%), Query Frame = 0


Query: 2   NILQDCTETVADGAEVMDINFPTTT-----QAPACAACKFHRRKCSVECPLAPYFPANRL 61
           NI ++C +   DG  +   + PT T             KF RRKCS +CPLAPYFPA+R 
Sbjct: 3   NIAENCGQIAEDGWPIQ--HSPTETAXXXXXXXXXXXXKFQRRKCSPDCPLAPYFPADRP 62

Query: 62  QDFENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEI 121
           ++F+NVR+LFGVKNVLKTL  ++  NR  AAECMIFEANCRA DL GGC +II  LQ+EI
Sbjct: 63  KNFQNVRRLFGVKNVLKTLRDVEPSNRAAAAECMIFEANCRADDLAGGCYKIIAELQSEI 122

Query: 122 ALLEAQHRHILRQLQISRQTAA 139
             LEAQ   +LRQL I R+TAA
Sbjct: 123 TFLEAQQNLVLRQLCIFRETAA 142

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BLAST of CsaV3_2G025550 vs. TAIR10
Match: AT3G47870.1 (LOB domain-containing protein 27)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-18
Identity = 43/103 (41.75%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 30  ACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAEC 89
           ACAACK+ RR+C+ +CPLAPYFPA + + F+NV +LFGV++++K L  LD   + +A + 
Sbjct: 36  ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDETQKPEAMKS 95

Query: 90  MIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQI 133
           +IF++  R    V GC  +  +LQ  I   E + + +  QLQ+
Sbjct: 96  IIFQSYVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVNSQLQL 138

[Close]

BLAST of CsaV3_2G025550 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-18
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 28  APACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAA 87
           A  CAACK  RR+C+ +C  +PYFPA+  Q F NV ++FG  NV K L  L  + R  A 
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 88  ECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQ 123
             M++EAN R  D V GC   I  LQ +I +L+AQ
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQ 105

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BLAST of CsaV3_2G025550 vs. TAIR10
Match: AT1G65620.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 85.1 bits (209), Expect = 4.1e-17
Identity = 51/114 (44.74%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 24  TTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNR 83
           ++T +P CAACKF RRKC  EC  APYFP ++ Q F NV K+FG  NV K L  L    R
Sbjct: 4   SSTNSP-CAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQR 63

Query: 84  FKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTA 138
             A   + +EA+ R  D V GC  +I  LQ           H LRQLQI    A
Sbjct: 64  EDAVNSLAYEADMRLRDPVYGCVGVISLLQ-----------HQLRQLQIDLSCA 105

[Close]

BLAST of CsaV3_2G025550 vs. TAIR10
Match: AT3G13850.1 (LOB domain-containing protein 22)

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-16
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 34  CKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFE 93
           CK+ RRKC+ +C LAPYFP +R + F N  KLFGV N+ K +  L    +  A   ++F+
Sbjct: 40  CKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHTIMFQ 99

Query: 94  ANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTA 138
           ++ RA D V GC  II +LQ +I     +   +L+QL + R  A
Sbjct: 100 SDARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFRDRA 143

[Close]

BLAST of CsaV3_2G025550 vs. TAIR10
Match: AT1G72980.1 (LOB domain-containing protein 7)

HSP 1 Score: 81.3 bits (199), Expect = 5.9e-16
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 30  ACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAEC 89
           ACAACK  R+KC   C LA YFP +    F N  KLFGV N+ K L  ++   R  A E 
Sbjct: 13  ACAACKHQRKKCKKNCILARYFPQDGTNKFLNAHKLFGVSNITKMLKRIEESQRDIAMEN 72

Query: 90  MIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTA 138
           +I+ AN RALD VGG  + I  L+ +I  ++ +     +Q+ + R  A
Sbjct: 73  LIYHANARALDPVGGVYRTICDLKCKIEFVQTELNLTRQQIDMCRSLA 120

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BLAST of CsaV3_2G025550 vs. Swiss-Prot
Match: sp|Q9STS6|LBD27_ARATH (LOB domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=LBD27 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-17
Identity = 43/103 (41.75%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 30  ACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAEC 89
           ACAACK+ RR+C+ +CPLAPYFPA + + F+NV +LFGV++++K L  LD   + +A + 
Sbjct: 36  ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDETQKPEAMKS 95

Query: 90  MIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQI 133
           +IF++  R    V GC  +  +LQ  I   E + + +  QLQ+
Sbjct: 96  IIFQSYVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVNSQLQL 138

[Close]

BLAST of CsaV3_2G025550 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.7e-17
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 28  APACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAA 87
           A  CAACK  RR+C+ +C  +PYFPA+  Q F NV ++FG  NV K L  L  + R  A 
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 88  ECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQ 123
             M++EAN R  D V GC   I  LQ +I +L+AQ
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQ 105

[Close]

BLAST of CsaV3_2G025550 vs. Swiss-Prot
Match: sp|O04479|AS2_ARATH (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.4e-16
Identity = 51/114 (44.74%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 24  TTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNR 83
           ++T +P CAACKF RRKC  EC  APYFP ++ Q F NV K+FG  NV K L  L    R
Sbjct: 4   SSTNSP-CAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQR 63

Query: 84  FKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTA 138
             A   + +EA+ R  D V GC  +I  LQ           H LRQLQI    A
Sbjct: 64  EDAVNSLAYEADMRLRDPVYGCVGVISLLQ-----------HQLRQLQIDLSCA 105

[Close]

BLAST of CsaV3_2G025550 vs. Swiss-Prot
Match: sp|Q9LRW1|LBD22_ARATH (LOB domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=LBD22 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-15
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 34  CKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFE 93
           CK+ RRKC+ +C LAPYFP +R + F N  KLFGV N+ K +  L    +  A   ++F+
Sbjct: 40  CKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHTIMFQ 99

Query: 94  ANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTA 138
           ++ RA D V GC  II +LQ +I     +   +L+QL + R  A
Sbjct: 100 SDARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFRDRA 143

[Close]

BLAST of CsaV3_2G025550 vs. Swiss-Prot
Match: sp|A2WXT0|LBD6_ORYSI (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.1e-15
Identity = 41/90 (45.56%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 31  CAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAECM 90
           CAACKF RRKC  +C  APYFP +  Q F +V ++FG  NV K L  L  Y R  A   +
Sbjct: 39  CAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSL 98

Query: 91  IFEANCRALDLVGGCCQIIPRLQNEIALLE 121
            +EA+ R  D V GC  II  LQ  +  L+
Sbjct: 99  AYEADMRLRDPVYGCVAIISILQRNLRQLQ 128

[Close]

BLAST of CsaV3_2G025550 vs. TrEMBL
Match: tr|A0A0A0LNK6|A0A0A0LNK6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351680 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.4e-82
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE 60
           MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE
Sbjct: 1   MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE 60

Query: 61  NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE 120
           NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE
Sbjct: 61  NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE 120

Query: 121 AQHRHILRQLQISRQTAAAISQLGAIPSEFDSD 154
           AQHRHILRQLQISRQTAAAISQLGAIPSEFDSD
Sbjct: 121 AQHRHILRQLQISRQTAAAISQLGAIPSEFDSD 153

[Close]

BLAST of CsaV3_2G025550 vs. TrEMBL
Match: tr|A0A1S3B9X0|A0A1S3B9X0_CUCME (LOB domain-containing protein 22-like OS=Cucumis melo OX=3656 GN=LOC103487781 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 5.4e-64
Identity = 129/156 (82.69%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 1   MNILQDCTETVADGAEVMDINFPTTTQ---APACAACKFHRRKCSVECPLAPYFPANRLQ 60
           MNI QDCTET ADG EV DINFPT  Q   A ACAACKFHRRKCSVECPLAPYFPANRL+
Sbjct: 1   MNIRQDCTETSADGGEVKDINFPTKIQAAAAAACAACKFHRRKCSVECPLAPYFPANRLR 60

Query: 61  DFENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIA 120
           DFENVRKLFGVKNVLK LAGL+  NRFKA ECMIFEANCRA+DL GGC +II +LQ+EIA
Sbjct: 61  DFENVRKLFGVKNVLKILAGLEPDNRFKAVECMIFEANCRAIDLAGGCYKIISKLQSEIA 120

Query: 121 LLEAQHRHILRQLQISRQTAAAISQLGAIPSEFDSD 154
           LLEAQHR IL QLQISRQTAAAISQ GAI SEFDSD
Sbjct: 121 LLEAQHRLILHQLQISRQTAAAISQRGAIRSEFDSD 156

[Close]

BLAST of CsaV3_2G025550 vs. TrEMBL
Match: tr|A0A061GRZ6|A0A061GRZ6_THECC (LOB domain-containing 22-like protein OS=Theobroma cacao OX=3641 GN=TCM_037293 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.9e-22
Identity = 58/115 (50.43%), Postives = 75/115 (65.22%), Query Frame = 0


Query: 28  APACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAA 87
           +PACAACK+ RRKC+  C LAP+FPAN  +DF N  KLFGV N+LK +  LD   R  A 
Sbjct: 13  SPACAACKYQRRKCTRNCLLAPFFPANHQKDFLNAHKLFGVSNILKIIRNLDPPQRLIAM 72

Query: 88  ECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTAAAISQ 143
           + ++FEAN RA D VGGC  II  L+ +I  ++A+   +L QL I +   AA SQ
Sbjct: 73  KSIVFEANTRANDPVGGCYGIISDLKMQIDWVKAERDLVLHQLAICKAQTAAASQ 127

[Close]

BLAST of CsaV3_2G025550 vs. TrEMBL
Match: tr|A0A2I4GL15|A0A2I4GL15_9ROSI (LOB domain-containing protein 22-like OS=Juglans regia OX=51240 GN=LOC109008807 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.7e-22
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 30  ACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAEC 89
           ACA+CK+ R+KC   CPLAP+FP +R +DF NV K+FGV+NVLK    L    + +A + 
Sbjct: 10  ACASCKYQRKKCDPHCPLAPFFPQHRRKDFMNVHKVFGVRNVLKLTKNLGHKEKSEAIKT 69

Query: 90  MIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISR 135
           +I++A+ R  D VGGCC++I  LQ+ I  LEA++R +L QL + R
Sbjct: 70  LIYQADVRVKDPVGGCCRVISELQHRIKNLEAEYRLLLEQLAVCR 114

[Close]

BLAST of CsaV3_2G025550 vs. TrEMBL
Match: tr|B9RRR3|B9RRR3_RICCO (LOB domain-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0797320 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.7e-22
Identity = 56/119 (47.06%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 24  TTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNR 83
           ++T++ ACAACKF RRKCS +CPLAP+FP++  +DF+N  +LFGV N+L++L  L  +++
Sbjct: 11  SSTRSQACAACKFRRRKCSQDCPLAPHFPSDAPEDFQNAHRLFGVANILESLKNLQDFDQ 70

Query: 84  FK-AAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTAAAIS 142
            + AA+ MIFEAN  A D VGGC Q + +L+N I  LE + R +  Q+ + R+ A + S
Sbjct: 71  KRAAAKSMIFEANVWASDPVGGCHQYVCQLKNRIQNLEMELRILRNQIVLYRRLAGSSS 129

The following BLAST results are available for this feature:

BLAST of CsaV3_2G025550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650178.1	5.1e-82	100.00	PREDICTED: LOB domain-containing protein 22-like [Cucumis sativus] >KGN62387.1 h...	[more]
XP_008444461.1	8.2e-64	82.69	PREDICTED: LOB domain-containing protein 22-like [Cucumis melo]	[more]
XP_022962555.1	2.6e-38	59.74	LOB domain-containing protein 22-like [Cucurbita moschata]	[more]
XP_022997547.1	1.7e-37	61.15	LOB domain-containing protein 22-like [Cucurbita maxima]	[more]
XP_022132086.1	1.1e-31	55.63	LOB domain-containing protein 25-like [Momordica charantia]	[more]

BLAST of CsaV3_2G025550 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47870.1	1.3e-18	41.75	LOB domain-containing protein 27	[more]
AT1G31320.1	3.7e-18	46.32	LOB domain-containing protein 4	[more]
AT1G65620.1	4.1e-17	44.74	Lateral organ boundaries (LOB) domain family protein	[more]
AT3G13850.1	2.0e-16	40.38	LOB domain-containing protein 22	[more]
AT1G72980.1	5.9e-16	40.74	LOB domain-containing protein 7	[more]

BLAST of CsaV3_2G025550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9STS6\|LBD27_ARATH	2.3e-17	41.75	LOB domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=LBD27 PE=1 S...	[more]
sp\|Q9SHE9\|LBD4_ARATH	6.7e-17	46.32	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
sp\|O04479\|AS2_ARATH	7.4e-16	44.74	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
sp\|Q9LRW1\|LBD22_ARATH	3.7e-15	40.38	LOB domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=LBD22 PE=2 S...	[more]
sp\|A2WXT0\|LBD6_ORYSI	8.1e-15	45.56	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 P...	[more]

BLAST of CsaV3_2G025550 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNK6\|A0A0A0LNK6_CUCSA	3.4e-82	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351680 PE=4 SV=1	[more]
tr\|A0A1S3B9X0\|A0A1S3B9X0_CUCME	5.4e-64	82.69	LOB domain-containing protein 22-like OS=Cucumis melo OX=3656 GN=LOC103487781 PE...	[more]
tr\|A0A061GRZ6\|A0A061GRZ6_THECC	3.9e-22	50.43	LOB domain-containing 22-like protein OS=Theobroma cacao OX=3641 GN=TCM_037293 P...	[more]
tr\|A0A2I4GL15\|A0A2I4GL15_9ROSI	6.7e-22	48.57	LOB domain-containing protein 22-like OS=Juglans regia OX=51240 GN=LOC109008807 ...	[more]
tr\|B9RRR3\|B9RRR3_RICCO	8.7e-22	47.06	LOB domain-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0797...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0071577	zinc II ion transmembrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity
molecular_function	GO:0005385	zinc ion transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G025550.1	CsaV3_2G025550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..129
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 26..142
None	No IPR available	PANTHER	PTHR31301:SF21	LOB DOMAIN-CONTAINING PROTEIN 22	coord: 26..142
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 30..124 e-value: 5.4E-30 score: 103.8
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 29..130 score: 20.43

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G025550	CSPI02G17950	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G025550	Cucsa.395100	Cucumber (Gy14) v1	cgycucB596
CsaV3_2G025550	CmaCh05G000930	Cucurbita maxima (Rimu)	cmacucB0926
CsaV3_2G025550	CmoCh05G001010	Cucurbita moschata (Rifu)	cmocucB0918
CsaV3_2G025550	Cp4.1LG11g00310	Cucurbita pepo (Zucchini)	cpecucB0106
CsaV3_2G025550	Carg11927	Silver-seed gourd	carcucB0209
CsaV3_2G025550	Cla022679	Watermelon (97103) v1	cucwmB124
CsaV3_2G025550	MELO3C010752	Melon (DHL92) v3.5.1	cucmeB124
CsaV3_2G025550	ClCG08G017040	Watermelon (Charleston Gray)	cucwcgB176
CsaV3_2G025550	Lsi08G015840	Bottle gourd (USVL1VR-Ls)	cuclsiB155
CsaV3_2G025550	MELO3C010752.2	Melon (DHL92) v3.6.1	cucmedB118
CsaV3_2G025550	Cla97C08G160740	Watermelon (97103) v2	cucwmbB164
CsaV3_2G025550	Bhi04G000457	Wax gourd	cucwgoB169

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G025550	Cucumber (Chinese Long) v3	cuccucB081
CsaV3_2G025550	Silver-seed gourd	carcucB0351
CsaV3_2G025550	Silver-seed gourd	carcucB0735
CsaV3_2G025550	Silver-seed gourd	carcucB0809
CsaV3_2G025550	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G025550	Cucumber (Gy14) v2	cgybcucB167
CsaV3_2G025550	Cucurbita maxima (Rimu)	cmacucB0015
CsaV3_2G025550	Cucurbita maxima (Rimu)	cmacucB0140
CsaV3_2G025550	Cucurbita maxima (Rimu)	cmacucB0203
CsaV3_2G025550	Cucurbita maxima (Rimu)	cmacucB0524
CsaV3_2G025550	Cucurbita moschata (Rifu)	cmocucB0004
CsaV3_2G025550	Cucurbita moschata (Rifu)	cmocucB0125
CsaV3_2G025550	Cucurbita moschata (Rifu)	cmocucB0186
CsaV3_2G025550	Cucurbita pepo (Zucchini)	cpecucB0675
CsaV3_2G025550	Cucurbita pepo (Zucchini)	cpecucB0832
CsaV3_2G025550	Cucurbita pepo (Zucchini)	cpecucB1013
CsaV3_2G025550	Wild cucumber (PI 183967)	cpicucB206
CsaV3_2G025550	Bottle gourd (USVL1VR-Ls)	cuclsiB129
CsaV3_2G025550	Bottle gourd (USVL1VR-Ls)	cuclsiB147
CsaV3_2G025550	Melon (DHL92) v3.5.1	cucmeB150
CsaV3_2G025550	Melon (DHL92) v3.6.1	cucmedB143
CsaV3_2G025550	Watermelon (Charleston Gray)	cucwcgB153
CsaV3_2G025550	Watermelon (97103) v1	cucwmB141
CsaV3_2G025550	Watermelon (97103) v2	cucwmbB141
CsaV3_2G025550	Wax gourd	cucwgoB204