CsaV3_2G024680 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G024680
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 17112523 .. 17112903 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCCCCCGGCTGAGACAGAACGTTTCCTTAACGGCCTTGCATTGAAGGGTTCGTTGTCATTGGTGGTTCAGGAAGCAAATGGTGAGCAGCGTCATTGTCTATAAAATAAAAGAGAAATACATTCAACATTTGCCTGAATGTTTGATAGCGCTCTTCCCCTTTTAGGCAGAGGACCATGTACAGCAACAACCAGTTCAAAGAAAAACGATGGATCTAATATTGCAGAATTGGGACACCAAATTCATGTGATCTTCCGTCGAGGTATCTGCCATGGGTTCAATGTCCAATTCAAAGCTAGAAGCATCATCTGCAATTTGTCATCACTAGGTCTGGATACCTTGGGATTTCTCTCAACTGTACAAGTCACAGCTGCAACTTAA

mRNA sequence

GTTCCCCCGGCTGAGACAGAACGTTTCCTTAACGGCCTTGCATTGAAGGGTTCGTTGTCATTGGTGGTTCAGGAAGCAAATGGCAGAGGACCATGTACAGCAACAACCAGTTCAAAGAAAAACGATGGATCTAATATTGCAGAATTGGGACACCAAATTCATGTGATCTTCCGTCGAGGTATCTGCCATGGGTTCAATGTCCAATTCAAAGCTAGAAGCATCATCTGCAATTTGTCATCACTAGGTCTGGATACCTTGGGATTTCTCTCAACTGTACAAGTCACAGCTGCAACTTAA

Coding sequence (CDS)

GTTCCCCCGGCTGAGACAGAACGTTTCCTTAACGGCCTTGCATTGAAGGGTTCGTTGTCATTGGTGGTTCAGGAAGCAAATGGCAGAGGACCATGTACAGCAACAACCAGTTCAAAGAAAAACGATGGATCTAATATTGCAGAATTGGGACACCAAATTCATGTGATCTTCCGTCGAGGTATCTGCCATGGGTTCAATGTCCAATTCAAAGCTAGAAGCATCATCTGCAATTTGTCATCACTAGGTCTGGATACCTTGGGATTTCTCTCAACTGTACAAGTCACAGCTGCAACTTAA

Protein sequence

VPPAETERFLNGLALKGSLSLVVQEANGRGPCTATTSSKKNDGSNIAELGHQIHVIFRRGICHGFNVQFKARSIICNLSSLGLDTLGFLSTVQVTAAT
Homology
[Close]
BLAST of CsaV3_2G024680 vs. NCBI nr
Match: KGN62293.1 (hypothetical protein Csa_2G348800 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 2.6e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   VPPAETERFLNGLALKGSLSLVVQEANGRGPCTATTSSKKNDGSNIAELGHQIHVIFRRG 60
           VPPAETERFLNGLALKGSLSLVVQEANGRGPCTATTSSKKNDGSNIAELGHQIHVIFRRG
Sbjct: 47  VPPAETERFLNGLALKGSLSLVVQEANGRGPCTATTSSKKNDGSNIAELGHQIHVIFRRG 106

Query: 61  ICHGFNVQFKARSIICNLSSLGLDTLGFLSTVQVTAAT 99
           ICHGFNVQFKARSIICNLSSLGLDTLGFLSTVQVTAAT
Sbjct: 107 ICHGFNVQFKARSIICNLSSLGLDTLGFLSTVQVTAAT 144

[Close]
BLAST of CsaV3_2G024680 vs. TrEMBL
Match: tr|A0A0A0LKG0|A0A0A0LKG0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348800 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   VPPAETERFLNGLALKGSLSLVVQEANGRGPCTATTSSKKNDGSNIAELGHQIHVIFRRG 60
           VPPAETERFLNGLALKGSLSLVVQEANGRGPCTATTSSKKNDGSNIAELGHQIHVIFRRG
Sbjct: 47  VPPAETERFLNGLALKGSLSLVVQEANGRGPCTATTSSKKNDGSNIAELGHQIHVIFRRG 106

Query: 61  ICHGFNVQFKARSIICNLSSLGLDTLGFLSTVQVTAAT 99
           ICHGFNVQFKARSIICNLSSLGLDTLGFLSTVQVTAAT
Sbjct: 107 ICHGFNVQFKARSIICNLSSLGLDTLGFLSTVQVTAAT 144

The following BLAST results are available for this feature:
BLAST of CsaV3_2G024680 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62293.12.6e-47100.00hypothetical protein Csa_2G348800 [Cucumis sativus][more]
BLAST of CsaV3_2G024680 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G024680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G024680 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKG0|A0A0A0LKG0_CUCSA1.7e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348800 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G024680.1CsaV3_2G024680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G024680CSPI02G17070Wild cucumber (PI 183967)cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G024680Cucumber (Chinese Long) v3cuccucB084
CsaV3_2G024680Silver-seed gourdcarcucB0535
CsaV3_2G024680Silver-seed gourdcarcucB0657
CsaV3_2G024680Silver-seed gourdcarcucB0759
CsaV3_2G024680Cucumber (Gy14) v2cgybcucB065
CsaV3_2G024680Cucumber (Gy14) v2cgybcucB209
CsaV3_2G024680Cucumber (Gy14) v1cgycucB437
CsaV3_2G024680Cucumber (Gy14) v1cgycucB596
CsaV3_2G024680Cucurbita maxima (Rimu)cmacucB0194
CsaV3_2G024680Cucurbita maxima (Rimu)cmacucB0486
CsaV3_2G024680Cucurbita maxima (Rimu)cmacucB0823
CsaV3_2G024680Cucurbita maxima (Rimu)cmacucB0926
CsaV3_2G024680Cucurbita moschata (Rifu)cmocucB0178
CsaV3_2G024680Cucurbita moschata (Rifu)cmocucB0474
CsaV3_2G024680Cucurbita moschata (Rifu)cmocucB0808
CsaV3_2G024680Cucurbita moschata (Rifu)cmocucB0918
CsaV3_2G024680Cucurbita pepo (Zucchini)cpecucB0035
CsaV3_2G024680Cucurbita pepo (Zucchini)cpecucB0106
CsaV3_2G024680Cucurbita pepo (Zucchini)cpecucB0478
CsaV3_2G024680Cucurbita pepo (Zucchini)cpecucB1007
CsaV3_2G024680Wild cucumber (PI 183967)cpicucB261
CsaV3_2G024680Bottle gourd (USVL1VR-Ls)cuclsiB131
CsaV3_2G024680Bottle gourd (USVL1VR-Ls)cuclsiB155
CsaV3_2G024680Melon (DHL92) v3.5.1cucmeB096
CsaV3_2G024680Melon (DHL92) v3.5.1cucmeB124
CsaV3_2G024680Melon (DHL92) v3.6.1cucmedB088
CsaV3_2G024680Melon (DHL92) v3.6.1cucmedB118
CsaV3_2G024680Watermelon (Charleston Gray)cucwcgB149
CsaV3_2G024680Watermelon (Charleston Gray)cucwcgB176
CsaV3_2G024680Watermelon (97103) v1cucwmB112
CsaV3_2G024680Watermelon (97103) v1cucwmB137
CsaV3_2G024680Watermelon (97103) v2cucwmbB135
CsaV3_2G024680Watermelon (97103) v2cucwmbB164
CsaV3_2G024680Wax gourdcucwgoB164
CsaV3_2G024680Wax gourdcucwgoB202