CsaV3_2G024330 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G024330
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	transcription termination factor MTERF8, chloroplastic-like
Location	chr2 : 16868391 .. 16870342 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAAAGTCGAGCAAAGTTAAGCCCAAATAGTTGGTCTATTTGCTTCAAATATTTATTAGGGTGTAATAGTTATTAACACTTCACTTGTTTGTTTTTATGGTTAAAATAAGTTTAGGGTTGTAGGAACTACTGTGTTCAACAGAACCCCAATCGTCACAAGTAGCACTCGGCAGTCGGTGGATACATGCCCACCCAAACCTCTTTATGACCAATTTTCTACTCAAACCTTCTCTACTACGTCTCTTTGCTCAAGATCTCCGGGATTTCACACACAACAACACCACAATTGGCCTCAAATTCCTTTCTTCTCTCTCTCAAACCCCTCAATCAACCAACGATCCCACTGTCGATTACCTCATCCACACCATCGGCCTCTCCAAGGCTTCAGCTCTCGCCGCTGCCAAGCAAATCCGTCTCAAACCAACCGCGCATCCCGACTCCGTTCTTGCACTCTTTAACGCCTATGGATTCACACCCTCCCACATTGCCAGCATCTTTAGCAGACGACCCAGTCTCCTCCTTGCCAATCCCGACACAACACTCAAGCCCAAGTTCGAGTTTCTCTCCAGAAACGGCATATCTGGCAACTTTCTCGCCGACGTAATCGATAGGGACCCATTGATTCTCTGTAGGAGCCTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCATAAATTTCTTTGGGTCTACTGATTGTATTGTTTCGCTATTTTCTACTGCACATAGGACTCGTGTTTTGCACACATTTTCTGAATTCGTGGCTCCTAATATCGAAGTATTGAGAGCTAATGGAGTGCTCGATTCCAACATTGCTAAACTGCTTTGGATGCGCCCGATTGCACTCTCCAGGGATGTGGAATGGTTTACTGACATTGTCGAGAAGACAAGGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTCATGGGCTGTGTACACTTTCATCGATGAGCAAGGACAAATGGTTATCGAAATTGCATCTTTTTAGAAGTTTTGGGTGGTCAGACGAGCAGTTTCAATCTATGTTTCTCAAGAAACCCTTTGTCATGAATTCGTCCGAGGAGCATTTAAAGAGGGCATTGGATTTCTTTGTGATCAAATGGGACTGGACATGGGAAGATATTTCCAAGTACTCACTTTTGCTCAATTTTAGTCTTGAAAAGAGGCTGATACCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAGGAAGAGTGTTGGCAGTGCATTGAATAGTCCCGAGCATAAGTTCTTAGAGAAGTTTGTGATGAAGTATCTTTCAGAAGATCCCAATCTATTAGAGATGTACCAAGAGAAGAAGAAGATGGCACTTTGTGAGAGATCAGAGGCTGTAGGTTTGTGTGCAAAGCTTGATCTTAGAACTGTGATTTGCTGATAACCGACATCATATGATAGTTATAGCATTTTGATCTTTTAGGAATGTACCAACTTGGCATGAGACTGCGCCAAGAGAAGTAAGTAGTTATGATGCTTAATTTTAAAGATCGGTATCATTGATGATTGGGGCCGGGTTTCTCTTACATTTACAAGAGAGAAAGATTGTTGTTCTCTTTGGTTAGCGGGTCTGTATCTCTTGTTTTGTTTGCTTGTTCTTCTTCTCGCTTCCTTTTGGAAGATTATTATATCTTAGAATTTATTCATTTATATCAATCAACCAAAAGTTTGATCATCTGGTTAGTGTATATATTTGGAATTCAACTACATGTGCAAACTCAAGTTTCGATTCTCTTCCCATTTATTTTCCTTATCATATTATGATTATATCATAAAACTATTTGTAGTAGTCATAGTCACAAAAATCTAACCTTATTTATCGTAACTCTTGTACAATACAAGATAGTCTTTGTTTATAATCTAACAAAATGCTATAAATCATATCGACAACGTCAAATCAAGTAAATCCCACTCACAAG

mRNA sequence

ATGACCAATTTTCTACTCAAACCTTCTCTACTACGTCTCTTTGCTCAAGATCTCCGGGATTTCACACACAACAACACCACAATTGGCCTCAAATTCCTTTCTTCTCTCTCTCAAACCCCTCAATCAACCAACGATCCCACTGTCGATTACCTCATCCACACCATCGGCCTCTCCAAGGCTTCAGCTCTCGCCGCTGCCAAGCAAATCCGTCTCAAACCAACCGCGCATCCCGACTCCGTTCTTGCACTCTTTAACGCCTATGGATTCACACCCTCCCACATTGCCAGCATCTTTAGCAGACGACCCAGTCTCCTCCTTGCCAATCCCGACACAACACTCAAGCCCAAGTTCGAGTTTCTCTCCAGAAACGGCATATCTGGCAACTTTCTCGCCGACGTAATCGATAGGGACCCATTGATTCTCTGTAGGAGCCTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCATAAATTTCTTTGGGTCTACTGATTGTATTGTTTCGCTATTTTCTACTGCACATAGGACTCGTGTTTTGCACACATTTTCTGAATTCGTGGCTCCTAATATCGAAGTATTGAGAGCTAATGGAGTGCTCGATTCCAACATTGCTAAACTGCTTTGGATGCGCCCGATTGCACTCTCCAGGGATGTGGAATGGTTTACTGACATTGTCGAGAAGACAAGGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTCATGGGCTGTGTACACTTTCATCGATGAGCAAGGACAAATGGTTATCGAAATTGCATCTTTTTAGAAGTTTTGGGTGGTCAGACGAGCAGTTTCAATCTATGTTTCTCAAGAAACCCTTTGTCATGAATTCGTCCGAGGAGCATTTAAAGAGGGCATTGGATTTCTTTGTGATCAAATGGGACTGGACATGGGAAGATATTTCCAAGTACTCACTTTTGCTCAATTTTAGTCTTGAAAAGAGGCTGATACCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAGGAAGAGTGTTGGCAGTGCATTGAATAGTCCCGAGCATAAGTTCTTAGAGAAGTTTGTGATGAAGTATCTTTCAGAAGATCCCAATCTATTAGAGATGTACCAAGAGAAGAAGAAGATGGCACTTTGTGAGAGATCAGAGGCTGTAGGTTTGTGTGCAAAGCTTGATCTTAGAACTGTGATTTGCTGA

Coding sequence (CDS)

ATGACCAATTTTCTACTCAAACCTTCTCTACTACGTCTCTTTGCTCAAGATCTCCGGGATTTCACACACAACAACACCACAATTGGCCTCAAATTCCTTTCTTCTCTCTCTCAAACCCCTCAATCAACCAACGATCCCACTGTCGATTACCTCATCCACACCATCGGCCTCTCCAAGGCTTCAGCTCTCGCCGCTGCCAAGCAAATCCGTCTCAAACCAACCGCGCATCCCGACTCCGTTCTTGCACTCTTTAACGCCTATGGATTCACACCCTCCCACATTGCCAGCATCTTTAGCAGACGACCCAGTCTCCTCCTTGCCAATCCCGACACAACACTCAAGCCCAAGTTCGAGTTTCTCTCCAGAAACGGCATATCTGGCAACTTTCTCGCCGACGTAATCGATAGGGACCCATTGATTCTCTGTAGGAGCCTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCATAAATTTCTTTGGGTCTACTGATTGTATTGTTTCGCTATTTTCTACTGCACATAGGACTCGTGTTTTGCACACATTTTCTGAATTCGTGGCTCCTAATATCGAAGTATTGAGAGCTAATGGAGTGCTCGATTCCAACATTGCTAAACTGCTTTGGATGCGCCCGATTGCACTCTCCAGGGATGTGGAATGGTTTACTGACATTGTCGAGAAGACAAGGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTCATGGGCTGTGTACACTTTCATCGATGAGCAAGGACAAATGGTTATCGAAATTGCATCTTTTTAGAAGTTTTGGGTGGTCAGACGAGCAGTTTCAATCTATGTTTCTCAAGAAACCCTTTGTCATGAATTCGTCCGAGGAGCATTTAAAGAGGGCATTGGATTTCTTTGTGATCAAATGGGACTGGACATGGGAAGATATTTCCAAGTACTCACTTTTGCTCAATTTTAGTCTTGAAAAGAGGCTGATACCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAGGAAGAGTGTTGGCAGTGCATTGAATAGTCCCGAGCATAAGTTCTTAGAGAAGTTTGTGATGAAGTATCTTTCAGAAGATCCCAATCTATTAGAGATGTACCAAGAGAAGAAGAAGATGGCACTTTGTGAGAGATCAGAGGCTGTAGGTTTGTGTGCAAAGCTTGATCTTAGAACTGTGATTTGCTGA

Protein sequence

MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKASALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFVMKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC

Homology

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BLAST of CsaV3_2G024330 vs. NCBI nr
Match: XP_004143080.2 (PREDICTED: uncharacterized protein LOC101214641 [Cucumis sativus] >KGN62260.1 hypothetical protein Csa_2G346010 [Cucumis sativus])

HSP 1 Score: 803.9 bits (2075), Expect = 2.5e-229
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA
Sbjct: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL
Sbjct: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH
Sbjct: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF
Sbjct: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK
Sbjct: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV
Sbjct: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC 403
           MKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC
Sbjct: 361 MKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC 402

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BLAST of CsaV3_2G024330 vs. NCBI nr
Match: XP_008444984.1 (PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis melo])

HSP 1 Score: 612.1 bits (1577), Expect = 1.4e-171
Identity = 311/382 (81.41%), Postives = 339/382 (88.74%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M N LLKPSLLRLFAQDL++FTHNNTTIGLK LSSLSQTPQSTND T+DYL+HTIGL K 
Sbjct: 1   MANSLLKPSLLRLFAQDLQNFTHNNTTIGLKLLSSLSQTPQSTNDRTLDYLVHTIGLPKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAK+ RLKPTA PDSVLALFNAYGFTPSHIASIFS++  LLLANPDTTLKPK EFL
Sbjct: 61  SALAAAKKTRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSRLLLANPDTTLKPKLEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NGISGN L +VI RDP IL RSLDKQIVPCIDFL NFFGSTD +V LFS    TRVL 
Sbjct: 121 SKNGISGNLLVNVICRDPYILSRSLDKQIVPCIDFLRNFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSE +APNIEVLRANGVLDSNIAK+L +RPIALSRDVE F DIVEK +E G NPSSLMF
Sbjct: 181 TFSESMAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHGLC +SSMSKDKWLSK+HLF+SFGWSDEQFQSMFLK+PF M  SEEHLKR LDFF+ K
Sbjct: 241 IHGLCMISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWT EDISKY++LLN SLEKR+IPRSSI++HLISKGFIKRKS G AL  PEH+FLEKFV
Sbjct: 301 WDWTREDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMAL 383
           MKYLS+DP+LLEMYQEKKKMA+
Sbjct: 361 MKYLSKDPHLLEMYQEKKKMAI 382

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BLAST of CsaV3_2G024330 vs. NCBI nr
Match: XP_008445328.1 (PREDICTED: transcription termination factor MTERF5, chloroplastic-like [Cucumis melo])

HSP 1 Score: 604.7 bits (1558), Expect = 2.2e-169
Identity = 310/383 (80.94%), Postives = 337/383 (87.99%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M N LLKPSLLR FAQDLR+FTHNNTTIGLKFLSSLSQTPQSTND T DYL+HTIGL K 
Sbjct: 1   MANSLLKPSLLRPFAQDLRNFTHNNTTIGLKFLSSLSQTPQSTNDRTQDYLVHTIGLPKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAK+IRLKPTA PDSVLALFNAYGFTPSHIASIFS++  LLLA+PDTTLKPK EFL
Sbjct: 61  SALAAAKKIRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSCLLLADPDTTLKPKIEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NGISGN LADVI RDP IL RSLDKQIVPCIDFLINFFGSTD +V LFS    TRVL 
Sbjct: 121 SKNGISGNLLADVICRDPHILHRSLDKQIVPCIDFLINFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSE +APN+EVLRANGV DSNIAK+L +RPIALS+DVE F DIVEKT+E G NPSSLMF
Sbjct: 181 TFSESMAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEKTKEMGLNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHG+C ++SMSKDKWLSK+HLF+SFGWSDEQFQSMFLK+PF M  SEEHLKR LDFF+ K
Sbjct: 241 IHGMCMIASMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWT ED+SKY +LLN SLEKR+IPRSSI+Q LISKGFIKRKS G AL  PE  FLEKFV
Sbjct: 301 WDWTLEDVSKYPVLLNLSLEKRVIPRSSIVQRLISKGFIKRKSFGKALQRPEQWFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQE-KKKMAL 383
           MKYLSEDP+LLEMYQE KKKMA+
Sbjct: 361 MKYLSEDPHLLEMYQETKKKMAI 383

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BLAST of CsaV3_2G024330 vs. NCBI nr
Match: XP_022132136.1 (transcription termination factor MTERF8, chloroplastic-like [Momordica charantia])

HSP 1 Score: 517.3 bits (1331), Expect = 4.6e-143
Identity = 272/382 (71.20%), Postives = 310/382 (81.15%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M+NFL K + LRL A+DLR FT N+ +IGL   SSLSQ  QSTN+ TVDYL+ T+GLSK 
Sbjct: 1   MSNFLFK-APLRLLARDLRKFTDNSISIGLNSFSSLSQISQSTNNRTVDYLVRTLGLSKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SA+A AK+I LK TA+PDSV+ALF AYGF PS+ ASIF R PSLLLA+PDTTLKPK EFL
Sbjct: 61  SAVAVAKRIHLKRTANPDSVIALFEAYGFAPSNTASIFCRNPSLLLADPDTTLKPKLEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NG+SG  L DVI RDP IL RSLDKQI+PCIDFL NFFGSTD IVSLFS    T VLH
Sbjct: 121 SQNGVSGQVLVDVISRDPSILRRSLDKQIIPCIDFLRNFFGSTDGIVSLFSARRGTWVLH 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
            FSE VAPNIE LRA GV DSNIAK++W+RP  LSRD E F DIVEKT+E GFNPSSLMF
Sbjct: 181 KFSESVAPNIERLRAYGVPDSNIAKMIWVRPRTLSRDAEGFIDIVEKTKEAGFNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           I+GLCT S M KDKWLSKL +F+SFGWS+EQFQS+FLK+P  MNSSEE +KRALDFF+ K
Sbjct: 241 IYGLCTFSGMKKDKWLSKLQVFKSFGWSEEQFQSLFLKQPKFMNSSEEQIKRALDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
            DWT E+ISKY ++L  S EKR+IPRSSILQHLISKGFIK+ SVG A    E KFL KFV
Sbjct: 301 LDWTPEEISKYPIVLFLSFEKRVIPRSSILQHLISKGFIKKTSVGKAFMIREDKFLVKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMAL 383
           M+YLS+DP+LLEMYQ  KKMA+
Sbjct: 361 MQYLSKDPHLLEMYQ--KKMAI 379

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BLAST of CsaV3_2G024330 vs. NCBI nr
Match: XP_022951071.1 (uncharacterized protein LOC111454030 [Cucurbita moschata])

HSP 1 Score: 515.8 bits (1327), Expect = 1.4e-142
Identity = 270/382 (70.68%), Postives = 309/382 (80.89%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           MTNFL K   LRLFAQDL+ F  N+TTI  KFLSSLS+  +STN+ TVDYL+HT+G SK 
Sbjct: 1   MTNFLFKLP-LRLFAQDLQKFAGNDTTISRKFLSSLSEVSESTNNRTVDYLVHTLGFSKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SAL AAK+I LKPTA+PDSV+ALF AYGFT S  ASIF R P+LLLA+PDTTLKPKFEFL
Sbjct: 61  SALVAAKRIHLKPTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTTLKPKFEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           SRNG +G+ L DVI RDP IL RSL KQIVPCID L NFFGST+ IVSLFS    T VL 
Sbjct: 121 SRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDLLRNFFGSTNGIVSLFSNRRGTWVLR 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
            FSE VAPNIE+LRANGV DSNIAK++W+RP  L+RD E F+DIVEKT+E GFNPSS MF
Sbjct: 181 NFSESVAPNIELLRANGVPDSNIAKMIWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           I GLCTL  M KDKWLSKLH+F SFGWS+EQFQS+F K+P +MNSSEE +KRALDFF+ K
Sbjct: 241 IDGLCTLLGMKKDKWLSKLHIFTSFGWSEEQFQSLFRKQPTIMNSSEEQIKRALDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
            DWT E+ISKY  +L+ S EKR++PRSSILQHLISKGFIK+ S G A    E KFL KFV
Sbjct: 301 LDWTHEEISKYPNVLHLSFEKRVVPRSSILQHLISKGFIKKTSFGRAFMISEDKFLFKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMAL 383
           ++YLSEDP+LLEMYQ  KKMA+
Sbjct: 361 IQYLSEDPHLLEMYQ--KKMAV 379

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BLAST of CsaV3_2G024330 vs. TAIR10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-35
Identity = 89/334 (26.65%), Postives = 154/334 (46.11%), Query Frame = 0


Query: 47  TVDYLIHTIGLSKASALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLL 106
           TV YL+ + GLS  SA + ++ ++L  +  PDSVLALF  +GFT   I S+    P +L 
Sbjct: 58  TVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRVLS 117

Query: 107 ANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCI 166
            +P+  + PK                              K+++PC D L +     + +
Sbjct: 118 LSPEDVISPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKRLIPCYDSLKSILVEEESV 177

Query: 167 VSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVE 226
           V       R   L   +  V+  + + R  GV D +I  L+   P         F +++ 
Sbjct: 178 VKCLKRGIRCFSL-KITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVLN 237

Query: 227 KTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSS 286
           +    GF+P    F+H +      S+     K  LF+ FGWS E F +  ++ P  +  S
Sbjct: 238 RVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVS 297

Query: 287 EEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVG- 346
           +E +   L++ V        DI    ++L+ S+EKR+ PR+ ++  L+SKG +K++ +  
Sbjct: 298 DEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINY 357

Query: 347 -SALNSPEHKFLEKFVMKYLSEDPNLLEMYQEKK 379
            + L     +F++KFV+KY  E P L++ +   +
Sbjct: 358 FTILKLKSSEFMDKFVLKYQDEMPQLVQPFTSNR 390

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BLAST of CsaV3_2G024330 vs. TAIR10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 138.7 bits (348), Expect = 8.1e-33
Identity = 97/330 (29.39%), Postives = 151/330 (45.76%), Query Frame = 0


Query: 47  TVDYLIHTIGLSKASALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLL 106
           T++YLI + GLS  SA  A++++ L     P++VL L   +GFT + I+S+  +RP LLL
Sbjct: 71  TLNYLIDSCGLSPDSATVASRKLLLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLL 130

Query: 107 ANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCI 166
           AN ++ L PK  F    G+S + LA  +                                
Sbjct: 131 ANAESVLLPKLSFFLSIGVSKSLLARTL-ASXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 190

Query: 167 VSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVE 226
                                     +   GV +  I  LL   P A+ +    F  I +
Sbjct: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAK 250

Query: 227 KTRERGFNPSSLMFIHGLCTLSSM-SKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNS 286
           + +E GFNP    F+  +  LS   +K  W     +++ +GWS++     F K P  M  
Sbjct: 251 QAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMML 310

Query: 287 SEEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRK-SV 346
           SE  + R +++FV + +     I++  ++L FSLEKR+IPR S+ + L+S G +K   S+
Sbjct: 311 SERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSL 370

Query: 347 GSALNSPEHKFLEKFVMKYLSEDPNLLEMY 375
            S L   E  FLEK V+KY  E P L+ +Y
Sbjct: 371 TSLLVPVEKVFLEKLVIKYEEELPELMNLY 399

[Close]

BLAST of CsaV3_2G024330 vs. TAIR10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 138.7 bits (348), Expect = 8.1e-33
Identity = 89/339 (26.25%), Postives = 169/339 (49.85%), Query Frame = 0


Query: 35  SLSQTPQSTNDPTVDYLIHTIGLSKASALAAAKQI-RLKPTAHPDSVLALFNAYGFTPSH 94
           S + TP S ++P     +   G  K  A+A A +   LK    P SV+ +  +Y F+ + 
Sbjct: 28  SSNATPASISNPAFVEFLRDNGFQKPLAIAIAMRYPNLKSLEQPRSVIQMLKSYSFSDTQ 87

Query: 95  IASIFSRRPSLLLANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCI 154
           I       P ++  N +  L+PK  F    G +G+ L   + ++  ++  SL K+++P +
Sbjct: 88  IQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTV 147

Query: 155 DFLINFFG-STDCIVSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPI 214
           + L +      + +  + S      +    + F+ PNI  L   G++ S +A LL  +P 
Sbjct: 148 EILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRRQPR 207

Query: 215 ALSRDVEWFTDIVEKTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQF 274
             +   E     V +  + GF  +S M +H + +LSS+S+  +  K+ LF + G+S+++ 
Sbjct: 208 IFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEI 267

Query: 275 QSMFLKKPFVMNSSEEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRLIPRSSILQH 334
             +  + P ++  SE+ L    +F++ +     E ++K   +L+++LEKR+IPR  +LQ 
Sbjct: 268 TDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQI 327

Query: 335 LISKGFI-----KRKSVGSALNSPEHKFLEKFVMKYLSE 367
           L  KG +     K+K++   +   E  FLEK+V+++  E
Sbjct: 328 LREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDE 366

[Close]

BLAST of CsaV3_2G024330 vs. TAIR10
Match: AT1G61990.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-29
Identity = 99/370 (26.76%), Postives = 174/370 (47.03%), Query Frame = 0


Query: 47  TVDYLIHTIGLSKASALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLL 106
           TV YL+ ++GLSK  A + ++++  +   +PDSVL+LF +YGFT S I++I +  P LL+
Sbjct: 54  TVSYLVDSLGLSKKLAESISRKVSFEDKVNPDSVLSLFRSYGFTDSQISTIITDYPLLLV 113

Query: 107 ANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCI 166
           A+    L  K + L   G S + + +++   P IL +         +  +I    S+   
Sbjct: 114 ADAKKALGRKLQILQSRGASSSEITEIVSTVPRILGKKSITVYYDAVKDIIVADTSSSYE 173

Query: 167 VSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDV---EWFTD 226
           +   S  ++ R           N+  LR  G+    +  LL    ++ S+ V   E F  
Sbjct: 174 LPQGSQGNKIR-----------NVSALRELGMPSRLLLPLL----VSKSQPVCGKENFDA 233

Query: 227 IVEKTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVM 286
            ++K  E GF+P++  F+  L  L  MS+     K+ +FRS G++ +    +F K P V+
Sbjct: 234 SLKKVVEMGFDPTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVL 293

Query: 287 NSSE-----------------------------------EHLKRALDFFVIKWDWTWEDI 346
             S+                                   E +K+  +F V K  W    +
Sbjct: 294 KVSKKKILKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNAL 353

Query: 347 SKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKS----VGSALNSPEHKFLEKFVMKYL 375
             +  +  +S+EKR+IPR +IL+ L+SKG +++ S    V S L+  +  FL+++VMK+ 
Sbjct: 354 VLHPQVFGYSMEKRIIPRCNILEALLSKGLLRKGSELPAVSSVLSCTDEGFLDRYVMKHN 408

[Close]

BLAST of CsaV3_2G024330 vs. TAIR10
Match: AT1G62120.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 112.1 bits (279), Expect = 8.2e-25
Identity = 91/362 (25.14%), Postives = 163/362 (45.03%), Query Frame = 0


Query: 47  TVDYLIHTIGLSKASALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLL 106
           TV YL+ ++GL+   A + + ++      +PDSVL+L  ++GFT S I++I    P LL+
Sbjct: 58  TVSYLVDSLGLATKVAESISMKVSFDNKGNPDSVLSLLRSHGFTDSQISNIIRTFPRLLI 117

Query: 107 ANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCI 166
            + + +L PK +FL   G S + L + +   P IL +   K +    DF+         I
Sbjct: 118 LDAEKSLAPKLQFLQSIGASSSELTETVSAVPKILGKRKGKSLSRYYDFV-------KVI 177

Query: 167 VSLFSTAHRTRVLHTF-----SEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDV--- 226
           +    ++   ++ H+       E    N+ VLR  GV      +LL+   I+ + DV   
Sbjct: 178 IEADKSSKLEKLCHSLPEGSKQENKIRNLLVLREMGVPQ----RLLFSLLISDAGDVCGK 237

Query: 227 EWFTDIVEKTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLK 286
           E F + ++K  E GF+P++  F+  L  L  +S     +K +  +  G + +   +MF K
Sbjct: 238 EKFKESLKKAVEIGFDPTTATFVKALNVLYGLSDKGIENKFNACKRLGLAVDDVWAMFKK 297

Query: 287 KPFVMNS-----------------------------------SEEHLKRALDFFVIKWDW 346
            P ++                                         +K   +F V + +W
Sbjct: 298 WPNILTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKTKTEFLVTEMNW 357

Query: 347 TWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRK--SVGSALNSPEHKFLEKFVM 364
             + ++    +L +SLEKR +PR ++++ LISKG ++ +   + S L S    FL  +V 
Sbjct: 358 PLKAVASIPQVLGYSLEKRTVPRCNVIKVLISKGLLESELPPISSVLTSTSEVFLYMYVR 408

[Close]

BLAST of CsaV3_2G024330 vs. Swiss-Prot
Match: sp|Q9FK23|MTEF8_ARATH (Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF8 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.1e-05
Identity = 53/230 (23.04%), Postives = 100/230 (43.48%), Query Frame = 0


Query: 97  IFSRRPSLLLANPDTTLKPKFEFLSRNGISGNF-LADVIDRDPLILCRSLDKQIVPCIDF 156
           I +RRP +L ++ D+ L P+ +F+       +F    V+ R P IL  S++  +   ++F
Sbjct: 234 IIARRPVILNSDLDSQLIPRVDFIRNLSGEDDFATGTVLRRLPAILSYSVE-HMNGQVEF 293

Query: 157 LINFFGSTDCIVSLFSTAH-RTRVLHTFSE-FVAPNIEVLRANGVLDSNIAKLLWMRPIA 216
           L +F G T     +F   H    V+ T  E  + P IE L+  G     + K L   P+ 
Sbjct: 294 LKSFAGLTS--EQVFKIVHVFPNVISTSKERKLRPRIEFLKECGFDSPGMFKFLSKAPLI 353

Query: 217 LSRDVEWFTDIVEKTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQ 276
           L+      +  +    + G+   +      +  ++  S D     + L+ S+G S E   
Sbjct: 354 LALSENNLSHKLGFLVKIGYKHRTKELAFAMGAVTRTSSDNMQRVIGLYLSYGLSFEDIL 413

Query: 277 SMFLKKPFVMNSSEEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRL 324
           +M  K P V+  +   L+  L++ +       E++  +   L + L+ R+
Sbjct: 414 AMSTKHPQVLQYNYTSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRI 460

[Close]

BLAST of CsaV3_2G024330 vs. TrEMBL
Match: tr|A0A0A0LK19|A0A0A0LK19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346010 PE=4 SV=1)

HSP 1 Score: 803.9 bits (2075), Expect = 1.6e-229
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA
Sbjct: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL
Sbjct: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH
Sbjct: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF
Sbjct: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK
Sbjct: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV
Sbjct: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC 403
           MKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC
Sbjct: 361 MKYLSEDPNLLEMYQEKKKMALCERSEAVGLCAKLDLRTVIC 402

[Close]

BLAST of CsaV3_2G024330 vs. TrEMBL
Match: tr|A0A1S3BCI2|A0A1S3BCI2_CUCME (transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488160 PE=4 SV=1)

HSP 1 Score: 612.1 bits (1577), Expect = 9.2e-172
Identity = 311/382 (81.41%), Postives = 339/382 (88.74%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M N LLKPSLLRLFAQDL++FTHNNTTIGLK LSSLSQTPQSTND T+DYL+HTIGL K 
Sbjct: 1   MANSLLKPSLLRLFAQDLQNFTHNNTTIGLKLLSSLSQTPQSTNDRTLDYLVHTIGLPKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAK+ RLKPTA PDSVLALFNAYGFTPSHIASIFS++  LLLANPDTTLKPK EFL
Sbjct: 61  SALAAAKKTRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSRLLLANPDTTLKPKLEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NGISGN L +VI RDP IL RSLDKQIVPCIDFL NFFGSTD +V LFS    TRVL 
Sbjct: 121 SKNGISGNLLVNVICRDPYILSRSLDKQIVPCIDFLRNFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSE +APNIEVLRANGVLDSNIAK+L +RPIALSRDVE F DIVEK +E G NPSSLMF
Sbjct: 181 TFSESMAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHGLC +SSMSKDKWLSK+HLF+SFGWSDEQFQSMFLK+PF M  SEEHLKR LDFF+ K
Sbjct: 241 IHGLCMISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWT EDISKY++LLN SLEKR+IPRSSI++HLISKGFIKRKS G AL  PEH+FLEKFV
Sbjct: 301 WDWTREDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMAL 383
           MKYLS+DP+LLEMYQEKKKMA+
Sbjct: 361 MKYLSKDPHLLEMYQEKKKMAI 382

[Close]

BLAST of CsaV3_2G024330 vs. TrEMBL
Match: tr|A0A1S3BCE7|A0A1S3BCE7_CUCME (transcription termination factor MTERF5, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488393 PE=4 SV=1)

HSP 1 Score: 604.7 bits (1558), Expect = 1.5e-169
Identity = 310/383 (80.94%), Postives = 337/383 (87.99%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M N LLKPSLLR FAQDLR+FTHNNTTIGLKFLSSLSQTPQSTND T DYL+HTIGL K 
Sbjct: 1   MANSLLKPSLLRPFAQDLRNFTHNNTTIGLKFLSSLSQTPQSTNDRTQDYLVHTIGLPKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAK+IRLKPTA PDSVLALFNAYGFTPSHIASIFS++  LLLA+PDTTLKPK EFL
Sbjct: 61  SALAAAKKIRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSCLLLADPDTTLKPKIEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+NGISGN LADVI RDP IL RSLDKQIVPCIDFLINFFGSTD +V LFS    TRVL 
Sbjct: 121 SKNGISGNLLADVICRDPHILHRSLDKQIVPCIDFLINFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSE +APN+EVLRANGV DSNIAK+L +RPIALS+DVE F DIVEKT+E G NPSSLMF
Sbjct: 181 TFSESMAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEKTKEMGLNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           IHG+C ++SMSKDKWLSK+HLF+SFGWSDEQFQSMFLK+PF M  SEEHLKR LDFF+ K
Sbjct: 241 IHGMCMIASMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWT ED+SKY +LLN SLEKR+IPRSSI+Q LISKGFIKRKS G AL  PE  FLEKFV
Sbjct: 301 WDWTLEDVSKYPVLLNLSLEKRVIPRSSIVQRLISKGFIKRKSFGKALQRPEQWFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQE-KKKMAL 383
           MKYLSEDP+LLEMYQE KKKMA+
Sbjct: 361 MKYLSEDPHLLEMYQETKKKMAI 383

[Close]

BLAST of CsaV3_2G024330 vs. TrEMBL
Match: tr|A0A0A0LQN0|A0A0A0LQN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402010 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 2.2e-141
Identity = 262/382 (68.59%), Postives = 297/382 (77.75%), Query Frame = 0


Query: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60
           M NFL KPSLLRL+AQDLR+F HN TTIGL FLSSLSQ+PQSTN  T+DYLIHTIGLSK 
Sbjct: 1   MANFLRKPSLLRLYAQDLRNFAHNKTTIGLNFLSSLSQSPQSTNHRTLDYLIHTIGLSKD 60

Query: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120
           SALAAAK+I LKP++ PDSVLALFNAYGFTPS  A+IF R+P LLLA+PD TLKPKFEFL
Sbjct: 61  SALAAAKKIHLKPSSDPDSVLALFNAYGFTPSQTANIFCRQPRLLLADPDKTLKPKFEFL 120

Query: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180
           S+N                                                  HRTRVLH
Sbjct: 121 SKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTHRTRVLH 180

Query: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240
           TFSEF+APNIEVLRANGV DS+IAKL W RP+ALSRDV+WFTDIVEKT+ERGFNPSSLMF
Sbjct: 181 TFSEFMAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMF 240

Query: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300
           I+GLC +SSMSKD+WLSKLH+FRS+GWSDEQFQSMFLK+P  MN SEE LKRALDFF+ K
Sbjct: 241 INGLCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNK 300

Query: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360
           WDWT E+I +Y ++L  S EKR++PRSSILQHLISKG IKRKS+G AL   EH+FLEKFV
Sbjct: 301 WDWTREEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFV 360

Query: 361 MKYLSEDPNLLEMYQEKKKMAL 383
           M+YLSEDP+LLEMYQEKKK+A+
Sbjct: 361 MQYLSEDPHLLEMYQEKKKIAI 382

[Close]

BLAST of CsaV3_2G024330 vs. TrEMBL
Match: tr|M5XIM3|M5XIM3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa018608mg PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.7e-83
Identity = 176/352 (50.00%), Postives = 227/352 (64.49%), Query Frame = 0


Query: 30  LKFLSSLSQTPQSTND--PTVDYLIHTIGLSKASALAAAKQIRLKPTAHPDSVLALFNAY 89
           L +L S S T  S  D     DYL +T+  +  SA   +K+I  +P  +P  V +LF  Y
Sbjct: 10  LYYLKSPSLTTLSICDYPALTDYLTNTLAFTPESASQVSKKIHGRPPNNPYPVHSLFEHY 69

Query: 90  GFTPSHIASIFSRRPSLLLANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDK 149
           GFTP+HIA I +  PS L ANP+ TLKPK +FL++NGI G  L   I  +P IL RSL+K
Sbjct: 70  GFTPTHIAKIITICPSFLWANPEKTLKPKLDFLAQNGIYGQDLVITITNNPRILERSLNK 129

Query: 150 QIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLL 209
           QI PCI FL +F GS   ++S FS    T V+  FS+ +  N E LR +GV  SNI K++
Sbjct: 130 QIAPCIGFLKSFLGSASALLSHFSVKRGTAVVLRFSDSMGANAETLRQHGVPHSNIMKMI 189

Query: 210 WMRPIALSRDVEWFTDIVEKTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGW 269
             +P   SRDVE F+ IV +  E GFNP S+MFI+G+CTL SM+KDKW+SK  + +SFGW
Sbjct: 190 ACQPGIFSRDVEVFSKIVREVEELGFNPLSMMFIYGVCTLFSMTKDKWVSKFEVLKSFGW 249

Query: 270 SDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRLIPRS 329
           S+ +FQ++FLK+P VM SSEE LKRALDFF+ K  W   DI KY +LL  S EKR++PR 
Sbjct: 250 SEAEFQALFLKQPLVMRSSEERLKRALDFFMNKMGWGTSDILKYPVLLCLSFEKRVLPRW 309

Query: 330 SILQHLISKGFI--KRKSVGSALNSPEHKFLEKFVMKYLSEDPNLLEMYQEK 378
           SILQ LI+KG I   +K+   A    E KF+ +FV  Y    P LLEMYQ+K
Sbjct: 310 SILQVLIAKGVITKSKKTTAKAFMQTEDKFVSEFVKGYEEHAPELLEMYQKK 361

The following BLAST results are available for this feature:

BLAST of CsaV3_2G024330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143080.2	2.5e-229	100.00	PREDICTED: uncharacterized protein LOC101214641 [Cucumis sativus] >KGN62260.1 hy...	[more]
XP_008444984.1	1.4e-171	81.41	PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis ...	[more]
XP_008445328.1	2.2e-169	80.94	PREDICTED: transcription termination factor MTERF5, chloroplastic-like [Cucumis ...	[more]
XP_022132136.1	4.6e-143	71.20	transcription termination factor MTERF8, chloroplastic-like [Momordica charantia...	[more]
XP_022951071.1	1.4e-142	70.68	uncharacterized protein LOC111454030 [Cucurbita moschata]	[more]

BLAST of CsaV3_2G024330 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21150.1	2.3e-35	26.65	Mitochondrial transcription termination factor family protein	[more]
AT5G07900.1	8.1e-33	29.39	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	8.1e-33	26.25	Mitochondrial transcription termination factor family protein	[more]
AT1G61990.1	1.9e-29	26.76	Mitochondrial transcription termination factor family protein	[more]
AT1G62120.1	8.2e-25	25.14	Mitochondrial transcription termination factor family protein	[more]

BLAST of CsaV3_2G024330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FK23\|MTEF8_ARATH	1.1e-05	23.04	Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of CsaV3_2G024330 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LK19\|A0A0A0LK19_CUCSA	1.6e-229	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346010 PE=4 SV=1	[more]
tr\|A0A1S3BCI2\|A0A1S3BCI2_CUCME	9.2e-172	81.41	transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3...	[more]
tr\|A0A1S3BCE7\|A0A1S3BCE7_CUCME	1.5e-169	80.94	transcription termination factor MTERF5, chloroplastic-like OS=Cucumis melo OX=3...	[more]
tr\|A0A0A0LQN0\|A0A0A0LQN0_CUCSA	2.2e-141	68.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402010 PE=4 SV=1	[more]
tr\|M5XIM3\|M5XIM3_PRUPE	2.7e-83	50.00	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa018608m...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR038538	MTERF_sf
IPR003690	MTERF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G024330.1	CsaV3_2G024330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 95..126 e-value: 0.0014 score: 27.9 coord: 238..268 e-value: 990.0 score: 3.9 coord: 131..163 e-value: 0.29 score: 20.2 coord: 273..304 e-value: 25.0 score: 13.8 coord: 305..339 e-value: 6.2 score: 15.8
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 81..218 e-value: 6.0E-14 score: 51.6 coord: 148..356 e-value: 8.0E-19 score: 67.7
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	G3DSA:1.25.70.10		coord: 145..366 e-value: 3.3E-19 score: 71.1
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 27..381
None	No IPR available	PANTHER	PTHR13068:SF45	SUBFAMILY NOT NAMED	coord: 27..381

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G024330	CSPI02G16760	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G024330	Cucsa.393940	Cucumber (Gy14) v1	cgycucB596
CsaV3_2G024330	CsGy2G016750	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G024330	MELO3C011349	Melon (DHL92) v3.5.1	cucmeB122
CsaV3_2G024330	MELO3C011349.2	Melon (DHL92) v3.6.1	cucmedB116

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G024330	Silver-seed gourd	carcucB1019
CsaV3_2G024330	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G024330	Cucurbita maxima (Rimu)	cmacucB0206
CsaV3_2G024330	Cucurbita maxima (Rimu)	cmacucB0929
CsaV3_2G024330	Cucurbita moschata (Rifu)	cmocucB0190
CsaV3_2G024330	Cucurbita moschata (Rifu)	cmocucB0921
CsaV3_2G024330	Cucurbita pepo (Zucchini)	cpecucB0109
CsaV3_2G024330	Cucurbita pepo (Zucchini)	cpecucB1018
CsaV3_2G024330	Bottle gourd (USVL1VR-Ls)	cuclsiB156
CsaV3_2G024330	Watermelon (Charleston Gray)	cucwcgB177
CsaV3_2G024330	Watermelon (97103) v1	cucwmB125
CsaV3_2G024330	Watermelon (97103) v2	cucwmbB165
CsaV3_2G024330	Wax gourd	cucwgoB173
CsaV3_2G024330	Silver-seed gourd	carcucB0161