CsaV3_2G019490 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G019490
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Membrane lipoprotein, putative
Location	chr2 : 15492774 .. 15493226 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTGGTGAATCCCTCAGCTGGACGTGCATTCATATGGATCGTCACTTGTTTTCTCTTCTTCTCCATTCTCAGCGGTGGCGGTTGTCTTTTGATGTACATGATCCTCCCTGAAACCGAAACCACCGCCTGGCTACCTATCACCGGTTTGTCCTTGGTCTGCCTCCCTTGGTTCTTTTGGCTATTAACTTTCTTCTATAGAGTTCTCTCACGTGCATGTGGTTTTAGAGTCTCCCTTGGTATTGGGGCGGATGTAAGTTCCAATAATGCAAATGCCAATAATAACAATAACAATAATGCATCGTCTGCTGAATCCGCTCAGCAGGACGTGGGAGAACGAGATAACGAGGACAACAACAATGCTGATCAAAGACACAGCAATTCGTCATCCAACAACTCAATAGTATCTCGTGAGAGTGAAATGCCATTAGCCATAACAATGGCATCGTAA

mRNA sequence

ATGTCTTTGGTGAATCCCTCAGCTGGACGTGCATTCATATGGATCGTCACTTGTTTTCTCTTCTTCTCCATTCTCAGCGGTGGCGGTTGTCTTTTGATGTACATGATCCTCCCTGAAACCGAAACCACCGCCTGGCTACCTATCACCGGTTTGTCCTTGGTCTGCCTCCCTTGGTTCTTTTGGCTATTAACTTTCTTCTATAGAGTTCTCTCACGTGCATGTGGTTTTAGAGTCTCCCTTGGTATTGGGGCGGATGACGTGGGAGAACGAGATAACGAGGACAACAACAATGCTGATCAAAGACACAGCAATTCGTCATCCAACAACTCAATAGTATCTCGTGAGAGTGAAATGCCATTAGCCATAACAATGGCATCGTAA

Coding sequence (CDS)

ATGTCTTTGGTGAATCCCTCAGCTGGACGTGCATTCATATGGATCGTCACTTGTTTTCTCTTCTTCTCCATTCTCAGCGGTGGCGGTTGTCTTTTGATGTACATGATCCTCCCTGAAACCGAAACCACCGCCTGGCTACCTATCACCGGTTTGTCCTTGGTCTGCCTCCCTTGGTTCTTTTGGCTATTAACTTTCTTCTATAGAGTTCTCTCACGTGCATGTGGTTTTAGAGTCTCCCTTGGTATTGGGGCGGATGACGTGGGAGAACGAGATAACGAGGACAACAACAATGCTGATCAAAGACACAGCAATTCGTCATCCAACAACTCAATAGTATCTCGTGAGAGTGAAATGCCATTAGCCATAACAATGGCATCGTAA

Protein sequence

MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFFWLLTFFYRVLSRACGFRVSLGIGADDVGERDNEDNNNADQRHSNSSSNNSIVSRESEMPLAITMAS

Homology

[Close]

BLAST of CsaV3_2G019490 vs. NCBI nr
Match: XP_011649431.1 (PREDICTED: putative uncharacterized protein DDB_G0284715 [Cucumis sativus] >KGN62210.1 hypothetical protein Csa_2G336080 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 117/150 (78.00%), Postives = 117/150 (78.00%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61  WLLTFFYRVLSRACGFRVSLGIGAD------------------------DVGERDNEXXX 120
           WLLTFFYRVLSRACGFRVSLGIGAD                                XXX
Sbjct: 61  WLLTFFYRVLSRACGFRVSLGIGADVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXIVSRESEMPLAITMAS 127
           XXXXXXXXXXXXXX VSRESEMPLAITMAS
Sbjct: 121 XXXXXXXXXXXXXXXVSRESEMPLAITMAS 150

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BLAST of CsaV3_2G019490 vs. NCBI nr
Match: XP_008460874.1 (PREDICTED: putative uncharacterized protein DDB_G0283431 [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 111/152 (73.03%), Postives = 118/152 (77.63%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPE+E+T WLPITGLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WLLTFFYRVLSRACGFRVSLGIGADDVGERD--------------------------NEX 120
           WLLTFFYRV+SRACG+RVSLG G +DVG  +                            X
Sbjct: 61  WLLTFFYRVISRACGYRVSLGTG-EDVGTNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXIVSRESEMPLAITMAS 127
           XXXXXXXXXXXXXXXX VSRESEMPLAITMAS
Sbjct: 121 XXXXXXXXXXXXXXXXXVSRESEMPLAITMAS 151

[Close]

BLAST of CsaV3_2G019490 vs. NCBI nr
Match: XP_022148967.1 (uncharacterized protein LOC111017503 [Momordica charantia])

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 100/145 (68.97%), Postives = 109/145 (75.17%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60
           MSLV+PS GRAFIWI+T FLFF ILSGGGCL+MYMILPETETTAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVDPSTGRAFIWIITVFLFFCILSGGGCLVMYMILPETETTAWLPMVGLSLVCLPWFF 60

Query: 61  WLLTFFYRVLSRACGFRVSLGIGADD----VGERDNEXXXXXXXXXXXXXXXXXI----- 120
           W+LTFFYRV+SRACGFRVSLG+G  D    V    +E  X    XXXXXXXXX +     
Sbjct: 61  WILTFFYRVISRACGFRVSLGVGVVDGGAGVANASSESPXGPGIXXXXXXXXXGLGDQKR 120

Query: 121 ----------VSRESEMPLAITMAS 127
                     VSRESEMPLAITMAS
Sbjct: 121 NSTSSSRNSAVSRESEMPLAITMAS 145

[Close]

BLAST of CsaV3_2G019490 vs. NCBI nr
Match: XP_023533092.1 (uncharacterized protein LOC111795084 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.1 bits (375), Expect = 1.0e-32
Identity = 81/146 (55.48%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60
           MSLV+PS GR  IWIVT  LFFS+LSGGGCLLMY+ LPETE TAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60

Query: 61  WLLTFFYRVLSRACGFRVSLGIGA-DDVGERDNEXXXXXXXXXXXXXXXXXI-------- 120
           W LTF YR++SRACGFRVSLG+   +D    +NE                          
Sbjct: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDVNQ 120

Query: 121 -----------VSRESEMPLAITMAS 127
                       SRESE PLAITMAS
Sbjct: 121 RQSNSSSNGSGASRESEKPLAITMAS 146

[Close]

BLAST of CsaV3_2G019490 vs. NCBI nr
Match: XP_022947828.1 (uncharacterized protein LOC111451588 [Cucurbita moschata])

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 88/146 (60.27%), Postives = 97/146 (66.44%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60
           MSLV+PS GR  IWIVT  LF S+LSGGGCLLMY+ LPETE TAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60

Query: 61  WLLTFFYRVLSRACGFRVSLGIGA-DDVGERDNE-------------------XXXXXXX 120
           W LTF YR++SRACGFRVSLG+   +D    +NE                          
Sbjct: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQ 120

Query: 121 XXXXXXXXXXIVSRESEMPLAITMAS 127
            XXXXXXXXX  SRESE PLAITM S
Sbjct: 121 RXXXXXXXXXXXSRESEKPLAITMGS 146

[Close]

BLAST of CsaV3_2G019490 vs. TAIR10
Match: AT4G30770.1 (Putative membrane lipoprotein)

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-19
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60
          M + +P AG+AFI ++T FLF SI  GGGCL+ Y ILP      WL   G+  VCLPWFF
Sbjct: 1  MPVPDPRAGQAFICLITLFLFLSIAVGGGCLIAYTILP--YPPVWLSYLGIVFVCLPWFF 60

Query: 61 WLLTFFYRVLSRACGFRVSLGIG 84
          W+LTF YR++SR  GFR+ +G G
Sbjct: 61 WILTFAYRIVSRTFGFRMVVGSG 81

[Close]

BLAST of CsaV3_2G019490 vs. TrEMBL
Match: tr|A0A0A0LJX6|A0A0A0LJX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336080 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.6e-43
Identity = 117/150 (78.00%), Postives = 117/150 (78.00%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61  WLLTFFYRVLSRACGFRVSLGIGAD------------------------DVGERDNEXXX 120
           WLLTFFYRVLSRACGFRVSLGIGAD                                XXX
Sbjct: 61  WLLTFFYRVLSRACGFRVSLGIGADVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXIVSRESEMPLAITMAS 127
           XXXXXXXXXXXXXX VSRESEMPLAITMAS
Sbjct: 121 XXXXXXXXXXXXXXXVSRESEMPLAITMAS 150

[Close]

BLAST of CsaV3_2G019490 vs. TrEMBL
Match: tr|A0A1S3CDW9|A0A1S3CDW9_CUCME (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103499619 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-39
Identity = 111/152 (73.03%), Postives = 118/152 (77.63%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPE+E+T WLPITGLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WLLTFFYRVLSRACGFRVSLGIGADDVGERD--------------------------NEX 120
           WLLTFFYRV+SRACG+RVSLG G +DVG  +                            X
Sbjct: 61  WLLTFFYRVISRACGYRVSLGTG-EDVGTNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXIVSRESEMPLAITMAS 127
           XXXXXXXXXXXXXXXX VSRESEMPLAITMAS
Sbjct: 121 XXXXXXXXXXXXXXXXXVSRESEMPLAITMAS 151

[Close]

BLAST of CsaV3_2G019490 vs. TrEMBL
Match: tr|A0A1J7HYK7|A0A1J7HYK7_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_02440 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-26
Identity = 61/127 (48.03%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60
           MS+ +PS+GR FIWI+TC LF SI++GG CL+ YM+LPE+E  +WLP+ G+SLVCLPW F
Sbjct: 1   MSVSDPSSGRTFIWIITCLLFISIIAGGACLVAYMVLPESEIASWLPMLGVSLVCLPWAF 60

Query: 61  WLLTFFYRVLSRACGFRVSLG--IGADDVGERDNEXXXXXXXXXXXXXXXXXIVSRESEM 120
           W LTF YR  SR CGFRV  G   G+ ++    +                  + S ES+M
Sbjct: 61  WFLTFLYRFFSRCCGFRVGGGGNGGSVNLARNHDANGACQSLKGGELNRASSVASHESQM 120

Query: 121 PLAITMA 126
           PL+ +MA
Sbjct: 121 PLSRSMA 127

[Close]

BLAST of CsaV3_2G019490 vs. TrEMBL
Match: tr|A0A2P5DZI1|A0A2P5DZI1_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_237240 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60
          M +++P AGRAFIW ++ FLF +I  GGGCL+MYMILPET TT+WLPI G++LVCLPWFF
Sbjct: 1  MPVIDPRAGRAFIWAISWFLFLTIAGGGGCLVMYMILPETTTTSWLPIAGITLVCLPWFF 60

Query: 61 WLLTFFYRVLSRACGFRVSLG 82
          WL TF YR+LSR  GFR+ +G
Sbjct: 61 WLSTFLYRILSRVFGFRLGIG 81

[Close]

BLAST of CsaV3_2G019490 vs. TrEMBL
Match: tr|A0A2P5APP4|A0A2P5APP4_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_312100 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-25
Identity = 56/92 (60.87%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 1  MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60
          M +++P AGRAFIW ++ FLF +I  GGGCL+MYMILPET TT+WLPI G++LVCLPWFF
Sbjct: 1  MPVIDPRAGRAFIWAISWFLFLTIAGGGGCLVMYMILPETTTTSWLPIVGITLVCLPWFF 60

Query: 61 WLLTFFYRVLSRACGFRVSL-GIGADDVGERD 92
          WL TF YR+LSR  GFR+ + G   ++V E +
Sbjct: 61 WLSTFLYRILSRVFGFRLGIDGSNGNNVVEEE 92

The following BLAST results are available for this feature:

BLAST of CsaV3_2G019490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649431.1	1.5e-42	78.00	PREDICTED: putative uncharacterized protein DDB_G0284715 [Cucumis sativus] >KGN6...	[more]
XP_008460874.1	1.5e-39	73.03	PREDICTED: putative uncharacterized protein DDB_G0283431 [Cucumis melo]	[more]
XP_022148967.1	1.3e-38	68.97	uncharacterized protein LOC111017503 [Momordica charantia]	[more]
XP_023533092.1	1.0e-32	55.48	uncharacterized protein LOC111795084 [Cucurbita pepo subsp. pepo]	[more]
XP_022947828.1	1.2e-31	60.27	uncharacterized protein LOC111451588 [Cucurbita moschata]	[more]

BLAST of CsaV3_2G019490 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30770.1	2.1e-19	54.22	Putative membrane lipoprotein	[more]

BLAST of CsaV3_2G019490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G019490 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJX6\|A0A0A0LJX6_CUCSA	9.6e-43	78.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336080 PE=4 SV=1	[more]
tr\|A0A1S3CDW9\|A0A1S3CDW9_CUCME	1.0e-39	73.03	Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103499619 PE=4 SV=1	[more]
tr\|A0A1J7HYK7\|A0A1J7HYK7_LUPAN	4.8e-26	48.03	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_02440 PE=4 S...	[more]
tr\|A0A2P5DZI1\|A0A2P5DZI1_9ROSA	1.4e-25	66.67	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_237240 PE=4 S...	[more]
tr\|A0A2P5APP4\|A0A2P5APP4_PARAD	4.1e-25	60.87	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_312100 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016043	cellular component organization
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G019490.1	CsaV3_2G019490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..114
None	No IPR available	PANTHER	PTHR34964:SF3	MEMBRANE LIPOPROTEIN-RELATED	coord: 3..91
None	No IPR available	PANTHER	PTHR34964	FAMILY NOT NAMED	coord: 3..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G019490	CSPI02G16160	Wild cucumber (PI 183967)	cpicucB082
CsaV3_2G019490	Cucsa.228440	Cucumber (Gy14) v1	cgycucB344
CsaV3_2G019490	CmoCh20G010640	Cucurbita moschata (Rifu)	cmocucB0638
CsaV3_2G019490	Carg11711	Silver-seed gourd	carcucB1102
CsaV3_2G019490	Cla007825	Watermelon (97103) v1	cucwmB154
CsaV3_2G019490	MELO3C023225	Melon (DHL92) v3.5.1	cucmeB104
CsaV3_2G019490	ClCG02G000350	Watermelon (Charleston Gray)	cucwcgB139
CsaV3_2G019490	Lsi10G007520	Bottle gourd (USVL1VR-Ls)	cuclsiB106
CsaV3_2G019490	MELO3C023225.2	Melon (DHL92) v3.6.1	cucmedB097
CsaV3_2G019490	Cla97C02G026620	Watermelon (97103) v2	cucwmbB124
CsaV3_2G019490	Bhi10G001352	Wax gourd	cucwgoB182

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G019490	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G019490	Cucurbita maxima (Rimu)	cmacucB0652
CsaV3_2G019490	Cucurbita maxima (Rimu)	cmacucB0695
CsaV3_2G019490	Cucurbita moschata (Rifu)	cmocucB0680
CsaV3_2G019490	Cucurbita moschata (Rifu)	cmocucB0642
CsaV3_2G019490	Cucurbita pepo (Zucchini)	cpecucB0335
CsaV3_2G019490	Cucurbita pepo (Zucchini)	cpecucB0887
CsaV3_2G019490	Silver-seed gourd	carcucB0756