CsaV3_2G017790 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G017790
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 14783420 .. 14783929 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCTGTAATTTTACCGCCAAACTCGACTTTACTGTCGACCAAACACCAAGAAACTGAGAGACCTGATACCGAGACCCAAAACACACCAGAAACCGCCTCCTCTAACCGAAGACCCATGTGTAGAACAAACACTGCACAATTGAATAAAAACCCACAGCTAAACCAACCTCTAACGGCTCAAAACTCACGGTTAAACCCACTGCTAAACCACGGTCAAGACTGCTGCCGAACATGCCACAAGGACGCCGGAAGAACGCCGCTGAAGTCGTCCTCTCCGCCAAACGCTGGAACCCATCAACTGGATAACAGTTTGGAACTCACCGCCAACGCCGTCAATGGAGCGCCGCCTCTCTCTCTGTTTTGTGTGCTTTACGGTAGCCTCACCCTCTCTCTTAGTGTGCTTTTCGGCTGCCCCCTCACTTTCCTCTCTTTTCTTTTGTTTTAATTAAAAGACCTCAAGAGGAAGGTGAAGGATTTGCAAAAAAAAAATGCCATTAATGCATAA

mRNA sequence

ATGCAATCTGTAATTTTACCGCCAAACTCGACTTTACTGTCGACCAAACACCAAGAAACTGAGAGACCTGATACCGAGACCCAAAACACACCAGAAACCGCCTCCTCTAACCGAAGACCCATGTGTAGAACAAACACTGCACAATTGAATAAAAACCCACAGCTAAACCAACCTCTAACGGCTCAAAACTCACGGTTAAACCCACTGCTAAACCACGGTCAAGACTGCTGCCGAACATGCCACAAGGACGCCGGAAGAACGCCGCTGAAGTCGTCCTCTCCGCCAAACGCTGGAACCCATCAACTGGATAACAGTTTGGAACTCACCGCCAACGCCGTCAATGGAGCGCCGCCTCTCTCTCTGTTTTGTGTGCTTTACGACCTCAAGAGGAAGGTGAAGGATTTGCAAAAAAAAAATGCCATTAATGCATAA

Coding sequence (CDS)

ATGCAATCTGTAATTTTACCGCCAAACTCGACTTTACTGTCGACCAAACACCAAGAAACTGAGAGACCTGATACCGAGACCCAAAACACACCAGAAACCGCCTCCTCTAACCGAAGACCCATGTGTAGAACAAACACTGCACAATTGAATAAAAACCCACAGCTAAACCAACCTCTAACGGCTCAAAACTCACGGTTAAACCCACTGCTAAACCACGGTCAAGACTGCTGCCGAACATGCCACAAGGACGCCGGAAGAACGCCGCTGAAGTCGTCCTCTCCGCCAAACGCTGGAACCCATCAACTGGATAACAGTTTGGAACTCACCGCCAACGCCGTCAATGGAGCGCCGCCTCTCTCTCTGTTTTGTGTGCTTTACGACCTCAAGAGGAAGGTGAAGGATTTGCAAAAAAAAAATGCCATTAATGCATAA

Protein sequence

MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLTAQNSRLNPLLNHGQDCCRTCHKDAGRTPLKSSSPPNAGTHQLDNSLELTANAVNGAPPLSLFCVLYDLKRKVKDLQKKNAINA

Homology

[Close]

BLAST of CsaV3_2G017790 vs. NCBI nr
Match: KGN62100.1 (hypothetical protein Csa_2G297250 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 4.8e-74
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLT 60
           MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLT
Sbjct: 1   MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLT 60

Query: 61  AQNSRLNPLLNHGQDCCRTCHKDAGRTPLKSSSPPNAGTHQLDNSLELTANAVNGAPPLS 120
           AQNSRLNPLLNHGQDCCRTCHKDAGRTPLKSSSPPNAGTHQLDNSLELTANAVNGAPPLS
Sbjct: 61  AQNSRLNPLLNHGQDCCRTCHKDAGRTPLKSSSPPNAGTHQLDNSLELTANAVNGAPPLS 120

Query: 121 LFCVLYDLKRKVKDLQKKNAINA 144
           LFCVLYDLKRKVKDLQKKNAINA
Sbjct: 121 LFCVLYDLKRKVKDLQKKNAINA 143

[Close]

BLAST of CsaV3_2G017790 vs. TrEMBL
Match: tr|A0A0A0LJP6|A0A0A0LJP6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297250 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 3.2e-74
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLT 60
           MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLT
Sbjct: 1   MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLT 60

Query: 61  AQNSRLNPLLNHGQDCCRTCHKDAGRTPLKSSSPPNAGTHQLDNSLELTANAVNGAPPLS 120
           AQNSRLNPLLNHGQDCCRTCHKDAGRTPLKSSSPPNAGTHQLDNSLELTANAVNGAPPLS
Sbjct: 61  AQNSRLNPLLNHGQDCCRTCHKDAGRTPLKSSSPPNAGTHQLDNSLELTANAVNGAPPLS 120

Query: 121 LFCVLYDLKRKVKDLQKKNAINA 144
           LFCVLYDLKRKVKDLQKKNAINA
Sbjct: 121 LFCVLYDLKRKVKDLQKKNAINA 143

The following BLAST results are available for this feature:

BLAST of CsaV3_2G017790 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62100.1	4.8e-74	100.00	hypothetical protein Csa_2G297250 [Cucumis sativus]	[more]

BLAST of CsaV3_2G017790 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G017790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G017790 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJP6\|A0A0A0LJP6_CUCSA	3.2e-74	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297250 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G017790.1	CsaV3_2G017790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..102

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G017790	CSPI02G15240	Wild cucumber (PI 183967)	cpicucB080

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G017790	Cucumber (Chinese Long) v3	cuccucB092
CsaV3_2G017790	Silver-seed gourd	carcucB0268
CsaV3_2G017790	Silver-seed gourd	carcucB0492
CsaV3_2G017790	Silver-seed gourd	carcucB1104
CsaV3_2G017790	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G017790	Cucumber (Gy14) v2	cgybcucB266
CsaV3_2G017790	Cucumber (Gy14) v1	cgycucB121
CsaV3_2G017790	Cucumber (Gy14) v1	cgycucB380
CsaV3_2G017790	Cucurbita maxima (Rimu)	cmacucB0652
CsaV3_2G017790	Cucurbita maxima (Rimu)	cmacucB0704
CsaV3_2G017790	Cucurbita maxima (Rimu)	cmacucB0777
CsaV3_2G017790	Cucurbita moschata (Rifu)	cmocucB0638
CsaV3_2G017790	Cucurbita moschata (Rifu)	cmocucB0691
CsaV3_2G017790	Cucurbita moschata (Rifu)	cmocucB0765
CsaV3_2G017790	Cucurbita pepo (Zucchini)	cpecucB0068
CsaV3_2G017790	Cucurbita pepo (Zucchini)	cpecucB0335
CsaV3_2G017790	Cucurbita pepo (Zucchini)	cpecucB0882
CsaV3_2G017790	Wild cucumber (PI 183967)	cpicucB329
CsaV3_2G017790	Bottle gourd (USVL1VR-Ls)	cuclsiB106
CsaV3_2G017790	Bottle gourd (USVL1VR-Ls)	cuclsiB116
CsaV3_2G017790	Melon (DHL92) v3.5.1	cucmeB102
CsaV3_2G017790	Melon (DHL92) v3.5.1	cucmeB161
CsaV3_2G017790	Melon (DHL92) v3.6.1	cucmedB095
CsaV3_2G017790	Melon (DHL92) v3.6.1	cucmedB153
CsaV3_2G017790	Watermelon (Charleston Gray)	cucwcgB131
CsaV3_2G017790	Watermelon (Charleston Gray)	cucwcgB139
CsaV3_2G017790	Watermelon (97103) v1	cucwmB148
CsaV3_2G017790	Watermelon (97103) v1	cucwmB154
CsaV3_2G017790	Watermelon (97103) v2	cucwmbB104
CsaV3_2G017790	Watermelon (97103) v2	cucwmbB124
CsaV3_2G017790	Wax gourd	cucwgoB181
CsaV3_2G017790	Wax gourd	cucwgoB196