CsaV3_2G017220 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G017220
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 14362566 .. 14363075 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTTCTTCCTTCTTACAGACCTAATTCGGAGTATAATATAAGTTACATAACATCAAACCACATGCCCCATCTTTTTTTTCCTCTTTATTTGGTTCAATAAAACACCTGACACACAAATTCGAACTCGAATCTTCAAATAACCCACTGCGTTTACCAATATTATTATCGAGCGAGAAATTCGAGTACAAAAGGCTTTTTTAAAATCATTTCTAGCGTTTGTAATGAATTTACAAGATATATACAGAATATGAAGCCAATCGGAGTGTGGGTAACTGTTGAAAGCTTACCCCCAAGTCAAAAACTTTGTTGCAAAAGACGCGCAGTCGTCAGAACGTGATGCACAAATGGAGAAAATACGATACCACGAGAGACTAGGCAAAGCCGTTGGACGTCGGGCTGACAAAGCAAGTCAGATTCGTGGGTGAACGTGGACCACCGTGGATGTGGGCTACCGTCGTCACTGCCTAACGCCTGTGGCTGCTGGAGTGTCGCCGGAGAAGAAGATTAG

mRNA sequence

ATGAAGCCAATCGGAGTGTGGGTAACTGTTGAAAGCTTACCCCCAAGTCAAAAACTTTGTTGCAAAAGACGCGCAGTCGTCAGAACCAAGTCAGATTCGTGGGTGAACGTGGACCACCGTGGATGTGGGCTACCGTCGTCACTGCCTAACGCCTGTGGCTGCTGGAGTGTCGCCGGAGAAGAAGATTAG

Coding sequence (CDS)

ATGAAGCCAATCGGAGTGTGGGTAACTGTTGAAAGCTTACCCCCAAGTCAAAAACTTTGTTGCAAAAGACGCGCAGTCGTCAGAACCAAGTCAGATTCGTGGGTGAACGTGGACCACCGTGGATGTGGGCTACCGTCGTCACTGCCTAACGCCTGTGGCTGCTGGAGTGTCGCCGGAGAAGAAGATTAG

Protein sequence

MKPIGVWVTVESLPPSQKLCCKRRAVVRTKSDSWVNVDHRGCGLPSSLPNACGCWSVAGEED
Homology
[Close]
BLAST of CsaV3_2G017220 vs. NCBI nr
Match: KGN62045.1 (hypothetical protein Csa_2G292750 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 8.3e-31
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MKPIGVWVTVESLPPSQKLCCKRRAVVRTKSDSWVNVDHRGCGLPSSLPNACGCWSVAGE 60
          MKPIGVWVTVESLPPSQKLCCKRRAVVRTKSDSWVNVDHRGCGLPSSLPNACGCWSVAGE
Sbjct: 1  MKPIGVWVTVESLPPSQKLCCKRRAVVRTKSDSWVNVDHRGCGLPSSLPNACGCWSVAGE 60

Query: 61 ED 63
          ED
Sbjct: 61 ED 62

[Close]
BLAST of CsaV3_2G017220 vs. TrEMBL
Match: tr|A0A0A0LJL2|A0A0A0LJL2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292750 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.5e-31
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MKPIGVWVTVESLPPSQKLCCKRRAVVRTKSDSWVNVDHRGCGLPSSLPNACGCWSVAGE 60
          MKPIGVWVTVESLPPSQKLCCKRRAVVRTKSDSWVNVDHRGCGLPSSLPNACGCWSVAGE
Sbjct: 1  MKPIGVWVTVESLPPSQKLCCKRRAVVRTKSDSWVNVDHRGCGLPSSLPNACGCWSVAGE 60

Query: 61 ED 63
          ED
Sbjct: 61 ED 62

The following BLAST results are available for this feature:
BLAST of CsaV3_2G017220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62045.18.3e-31100.00hypothetical protein Csa_2G292750 [Cucumis sativus][more]
BLAST of CsaV3_2G017220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G017220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G017220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJL2|A0A0A0LJL2_CUCSA5.5e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292750 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G017220.1CsaV3_2G017220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G017220Silver-seed gourdcarcucB1036
CsaV3_2G017220Silver-seed gourdcarcucB1103
CsaV3_2G017220Cucumber (Gy14) v2cgybcucB068
CsaV3_2G017220Cucumber (Gy14) v2cgybcucB064
CsaV3_2G017220Cucumber (Gy14) v1cgycucB557
CsaV3_2G017220Cucurbita maxima (Rimu)cmacucB0652
CsaV3_2G017220Cucurbita maxima (Rimu)cmacucB0697
CsaV3_2G017220Cucurbita maxima (Rimu)cmacucB0777
CsaV3_2G017220Cucurbita moschata (Rifu)cmocucB0638
CsaV3_2G017220Cucurbita moschata (Rifu)cmocucB0682
CsaV3_2G017220Cucurbita moschata (Rifu)cmocucB0685
CsaV3_2G017220Cucurbita pepo (Zucchini)cpecucB0335
CsaV3_2G017220Cucurbita pepo (Zucchini)cpecucB0890
CsaV3_2G017220Wild cucumber (PI 183967)cpicucB080
CsaV3_2G017220Melon (DHL92) v3.5.1cucmeB102
CsaV3_2G017220Melon (DHL92) v3.5.1cucmeB156
CsaV3_2G017220Melon (DHL92) v3.6.1cucmedB095
CsaV3_2G017220Watermelon (Charleston Gray)cucwcgB134
CsaV3_2G017220Watermelon (97103) v1cucwmB153
CsaV3_2G017220Watermelon (97103) v2cucwmbB120
CsaV3_2G017220Wax gourdcucwgoB181