CsaV3_2G017050 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G017050
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 14273868 .. 14274354 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGAGCTAAAATGGAAGAAACCGATCAATCTGTAGCTCAGCACAGAGGTTATGGAAAGGCTGCAACAGACCCACAAAGAAAAAACGGTCATAGAAAAGGAAGCTTTTCTAGTAACAAGCTTCCATTGAAAAAGGGACCCATCAGCTCAGAGAAAAGGTAGAGATTCTGAAATGGGTGTTTTTAGAAAAATTTGGTGAGAAATGGACAGGTCGTTGGGGTTTGAATGAAGAGAAGAAAATAAAAGTCCAAATCGTCAACTGGGTAAGCGATTGAGAAGTGGGAAAGTGGCCAAATTAGAGATTTCAAAGGGGAAACATGAGTAGAATGGTTAAAAGAGTGTGTTGTTATTATATAAGGAGAGTCGCCGGCCAAGTTCTCTGGTTTTCAGGCAACCGGTAATGGGTTCTGCATTATCTCTACATAAATGGTCGATTTCTCAAGGAAAAACGAAGGAGATGATTCAATTTAACAAACTTCTATGA

mRNA sequence

ATGAAGGGAGCTAAAATGGAAGAAACCGATCAATCTGTAGCTCAGCACAGAGGTTATGGAAAGGCTGCAACAGACCCACAAAGAAAAAACGAAAAATTTGGTGAGAAATGGACAGGTCGTTGGGGTTTGAATGAAGAGAAGAAAATAAAAGTCCAAATCGTCAACTGGGAGAGTCGCCGGCCAAGTTCTCTGGTTTTCAGGCAACCGGTAATGGGTTCTGCATTATCTCTACATAAATGGTCGATTTCTCAAGGAAAAACGAAGGAGATGATTCAATTTAACAAACTTCTATGA

Coding sequence (CDS)

ATGAAGGGAGCTAAAATGGAAGAAACCGATCAATCTGTAGCTCAGCACAGAGGTTATGGAAAGGCTGCAACAGACCCACAAAGAAAAAACGAAAAATTTGGTGAGAAATGGACAGGTCGTTGGGGTTTGAATGAAGAGAAGAAAATAAAAGTCCAAATCGTCAACTGGGAGAGTCGCCGGCCAAGTTCTCTGGTTTTCAGGCAACCGGTAATGGGTTCTGCATTATCTCTACATAAATGGTCGATTTCTCAAGGAAAAACGAAGGAGATGATTCAATTTAACAAACTTCTATGA

Protein sequence

MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRRPSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL
Homology
[Close]
BLAST of CsaV3_2G017050 vs. NCBI nr
Match: KGN62028.1 (hypothetical protein Csa_2G287100 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 6.8e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRR 60
          MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRR
Sbjct: 1  MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRR 60

Query: 61 PSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL 98
          PSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL
Sbjct: 61 PSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL 97

[Close]
BLAST of CsaV3_2G017050 vs. TrEMBL
Match: tr|A0A0A0LJU1|A0A0A0LJU1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287100 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.5e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRR 60
          MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRR
Sbjct: 1  MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRR 60

Query: 61 PSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL 98
          PSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL
Sbjct: 61 PSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL 97

The following BLAST results are available for this feature:
BLAST of CsaV3_2G017050 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62028.16.8e-48100.00hypothetical protein Csa_2G287100 [Cucumis sativus][more]
BLAST of CsaV3_2G017050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G017050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G017050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJU1|A0A0A0LJU1_CUCSA4.5e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287100 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G017050.1CsaV3_2G017050.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G017050Cucurbita maxima (Rimu)cmacucB0652
CsaV3_2G017050Cucurbita maxima (Rimu)cmacucB0697
CsaV3_2G017050Cucurbita maxima (Rimu)cmacucB0777
CsaV3_2G017050Cucurbita maxima (Rimu)cmacucB1007
CsaV3_2G017050Cucurbita moschata (Rifu)cmocucB0638
CsaV3_2G017050Cucurbita moschata (Rifu)cmocucB0682
CsaV3_2G017050Cucurbita moschata (Rifu)cmocucB0685
CsaV3_2G017050Cucurbita moschata (Rifu)cmocucB0991
CsaV3_2G017050Cucurbita pepo (Zucchini)cpecucB0335
CsaV3_2G017050Cucurbita pepo (Zucchini)cpecucB0592
CsaV3_2G017050Cucurbita pepo (Zucchini)cpecucB0890
CsaV3_2G017050Wild cucumber (PI 183967)cpicucB080
CsaV3_2G017050Bottle gourd (USVL1VR-Ls)cuclsiB104
CsaV3_2G017050Melon (DHL92) v3.5.1cucmeB102
CsaV3_2G017050Melon (DHL92) v3.5.1cucmeB098
CsaV3_2G017050Melon (DHL92) v3.5.1cucmeB156
CsaV3_2G017050Melon (DHL92) v3.6.1cucmedB090
CsaV3_2G017050Melon (DHL92) v3.6.1cucmedB095
CsaV3_2G017050Watermelon (Charleston Gray)cucwcgB134
CsaV3_2G017050Watermelon (97103) v1cucwmB153
CsaV3_2G017050Watermelon (97103) v2cucwmbB120
CsaV3_2G017050Wax gourdcucwgoB181
CsaV3_2G017050Wax gourdcucwgoB188
CsaV3_2G017050Cucumber (Chinese Long) v3cuccucB093
CsaV3_2G017050Silver-seed gourdcarcucB0842
CsaV3_2G017050Silver-seed gourdcarcucB0891
CsaV3_2G017050Silver-seed gourdcarcucB1103
CsaV3_2G017050Cucumber (Gy14) v2cgybcucB068
CsaV3_2G017050Cucumber (Gy14) v2cgybcucB064
CsaV3_2G017050Cucumber (Gy14) v2cgybcucB264
CsaV3_2G017050Cucumber (Gy14) v1cgycucB557