CsaV3_2G016340 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G016340
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 13529699 .. 13530307 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTGAATCTATCGCCGGCCCCGAAGCTCCGTCGCCGGCCTTCCGAAGCTCATTGAACAGCTTTCCCTTTCGATTTCGGTGTGCGAGGTCAAGGCTCAACTTCGCAGTTACAGCGTGGCGTCCAACAGAGCTCGAGGAACTATTCAGTACTGCTCCAGAATGGGTTTTGCCTTTCGCGCTACTCCTCAACGTGAGGGGACCGGAGCAGCGCGGAACTGGGCGTCGGATTTGAGCGTCGTTGAATCTGAGGGGAACTGAGCGTCGTCGAACGGATCGGCGGATCTGAGAAACACGATCTGGGAGTCTTCAAACGGAACGAGTCGGGTACGGGTCGTCTGGTCAGAGTTCGTGAAGATTGAGGGGGCGACGGCTAGGCAATGTCTTCCTACGACTAACAAAAGCCAGCCAACGAACCACCCACCGAAATCTGACCTCCGTTGCGCCGCTCGACTCACCGGACGACGATCACCACGTTGCACCGCAACTCTTCAGGCCGATTTGAAGGGTCAACCGGCCTTGATCGGCGTCGCTCTCTCCGACTTCCTCCACGGATTTCGTCGTCAGTCGAGCCGTTCAACACCTAACCATCTTTCGCCGTCATCCCGCTAG

mRNA sequence

TCTGAATCTATCGCCGGCCCCGAAGCTCCGTCGCCGGCCTTCCGAAGCTCATTGAACAGCTTTCCCTTTCGATTTCGGTGTGCGAGGTCAAGGCTCAACTTCGCAGTTACAGCGTGGCGTCCAACAGAGCTCGAGGAACTATTCAGTACTGCTCCAGAATGGGTTTTGCCTTTCGCGCTACTCCTCAACGTGAGGGGACCGGAGCAGCGCGGAACTGGGCAGTTCGTGAAGATTGAGGGGGCGACGGCTAGGCAATGTCTTCCTACGACTAACAAAAGCCAGCCAACGAACCACCCACCGAAATCTGACCTCCGTTGCGCCGCTCGACTCACCGGACGACGATCACCACGTTGCACCGCAACTCTTCAGGCCGATTTGAAGGGTCAACCGGCCTTGATCGGCGTCGCTCTCTCCGACTTCCTCCACGGATTTCGTCGTCAGTCGAGCCGTTCAACACCTAACCATCTTTCGCCGTCATCCCGCTAG

Coding sequence (CDS)

TCTGAATCTATCGCCGGCCCCGAAGCTCCGTCGCCGGCCTTCCGAAGCTCATTGAACAGCTTTCCCTTTCGATTTCGGTGTGCGAGGTCAAGGCTCAACTTCGCAGTTACAGCGTGGCGTCCAACAGAGCTCGAGGAACTATTCAGTACTGCTCCAGAATGGGTTTTGCCTTTCGCGCTACTCCTCAACGTGAGGGGACCGGAGCAGCGCGGAACTGGGCAGTTCGTGAAGATTGAGGGGGCGACGGCTAGGCAATGTCTTCCTACGACTAACAAAAGCCAGCCAACGAACCACCCACCGAAATCTGACCTCCGTTGCGCCGCTCGACTCACCGGACGACGATCACCACGTTGCACCGCAACTCTTCAGGCCGATTTGAAGGGTCAACCGGCCTTGATCGGCGTCGCTCTCTCCGACTTCCTCCACGGATTTCGTCGTCAGTCGAGCCGTTCAACACCTAACCATCTTTCGCCGTCATCCCGCTAG

Protein sequence

SESIAGPEAPSPAFRSSLNSFPFRFRCARSRLNFAVTAWRPTELEELFSTAPEWVLPFALLLNVRGPEQRGTGQFVKIEGATARQCLPTTNKSQPTNHPPKSDLRCAARLTGRRSPRCTATLQADLKGQPALIGVALSDFLHGFRRQSSRSTPNHLSPSSR
Homology
[Close]
BLAST of CsaV3_2G016340 vs. NCBI nr
Match: KGN66481.1 (hypothetical protein Csa_1G613530 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 69/83 (83.13%), Postives = 70/83 (84.34%), Query Frame = 0 

Query: 85  QCLPTTNKSQPT------NHPPKSDLRCAARLTGRRSPRCTATLQADLKGQPALIGVALS 144
           Q LP+ N    T      N PPKSDLRCAARLTGRRSPRCTATLQADLKGQPALIGVALS
Sbjct: 2   QQLPSPNSLTSTSSLSFFNRPPKSDLRCAARLTGRRSPRCTATLQADLKGQPALIGVALS 61

Query: 145 DFLHGFRRQSSRSTPNHLSPSSR 162
           DFLHGFRRQSSRSTPNHLSPSSR
Sbjct: 62  DFLHGFRRQSSRSTPNHLSPSSR 84

[Close]
BLAST of CsaV3_2G016340 vs. TrEMBL
Match: tr|A0A0A0M2R9|A0A0A0M2R9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613530 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 69/83 (83.13%), Postives = 70/83 (84.34%), Query Frame = 0 

Query: 85  QCLPTTNKSQPT------NHPPKSDLRCAARLTGRRSPRCTATLQADLKGQPALIGVALS 144
           Q LP+ N    T      N PPKSDLRCAARLTGRRSPRCTATLQADLKGQPALIGVALS
Sbjct: 2   QQLPSPNSLTSTSSLSFFNRPPKSDLRCAARLTGRRSPRCTATLQADLKGQPALIGVALS 61

Query: 145 DFLHGFRRQSSRSTPNHLSPSSR 162
           DFLHGFRRQSSRSTPNHLSPSSR
Sbjct: 62  DFLHGFRRQSSRSTPNHLSPSSR 84

The following BLAST results are available for this feature:
BLAST of CsaV3_2G016340 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66481.11.7e-2783.13hypothetical protein Csa_1G613530 [Cucumis sativus][more]
BLAST of CsaV3_2G016340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G016340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G016340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M2R9|A0A0A0M2R9_CUCSA1.1e-2783.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613530 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G016340.1CsaV3_2G016340.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G016340Cucumber (Chinese Long) v3cuccucB097
CsaV3_2G016340Silver-seed gourdcarcucB0842
CsaV3_2G016340Cucumber (Gy14) v2cgybcucB064
CsaV3_2G016340Cucumber (Gy14) v2cgybcucB267
CsaV3_2G016340Cucumber (Gy14) v1cgycucB351
CsaV3_2G016340Cucurbita maxima (Rimu)cmacucB0654
CsaV3_2G016340Cucurbita maxima (Rimu)cmacucB0705
CsaV3_2G016340Cucurbita moschata (Rifu)cmocucB0641
CsaV3_2G016340Cucurbita moschata (Rifu)cmocucB0690
CsaV3_2G016340Cucurbita pepo (Zucchini)cpecucB0338
CsaV3_2G016340Cucurbita pepo (Zucchini)cpecucB0883
CsaV3_2G016340Wild cucumber (PI 183967)cpicucB080
CsaV3_2G016340Wild cucumber (PI 183967)cpicucB333
CsaV3_2G016340Bottle gourd (USVL1VR-Ls)cuclsiB104
CsaV3_2G016340Bottle gourd (USVL1VR-Ls)cuclsiB118
CsaV3_2G016340Melon (DHL92) v3.5.1cucmeB102
CsaV3_2G016340Melon (DHL92) v3.5.1cucmeB163
CsaV3_2G016340Melon (DHL92) v3.6.1cucmedB095
CsaV3_2G016340Watermelon (Charleston Gray)cucwcgB133
CsaV3_2G016340Watermelon (Charleston Gray)cucwcgB134
CsaV3_2G016340Watermelon (97103) v1cucwmB153
CsaV3_2G016340Watermelon (97103) v2cucwmbB120
CsaV3_2G016340Wax gourdcucwgoB183
CsaV3_2G016340Wax gourdcucwgoB187