CsaV3_2G015350 (gene) Cucumber (Chinese Long) v3

NameCsaV3_2G015350
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 12834979 .. 12835881 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATCGGTTTGCTCTCACAGGTTGGTCATCTACTAGTTAAATCTACTCTCTCTACCCTTGTCATTATCTTAGTTTTTTTGTACATATGAAATACATTATTACATTGATTTTGTCGAGATGCTCCTTATGTCTGGAATTCATGGTTTCATGTTATATAGTCAATCATCCAACTGATCTTCTTCTTGAAAACTTTGGGGCTCTAGGTTGAAGTATGTAGCCTGCCTATATAGCACTGTAGCTCCTATAATTTCTCATTAAGGGTGAGTTTGGCCATCCATTTGATAGGAATTGCTACTAGGAAATAATCAATTAGAGTATTAAGGGGATATTAGCAATTAGTTAGAGAAATGGTTAGAGTAGCAATAGGAGTATGGAAAGGGAGAGACAAACAGTATATTTATGAGTAATTTAGGGCATGAGGAATCTCAAGATTGGGAAGGTCCAAATATCCCGAAAACTTGGGGTCATTATACACTTTGTTAAAAGATGTATTATTCCACCAAATAAATTTTCTATACTTAGAAAAAACTGTTCTTCAAGTAAATAACCAAGACAAAAACCAATTTAGCCCTATGATTCTTTCTGTTCTTTGACTTTAGCCAAAACTCGAACAAAGCAAAAGGAGAAGTTGTATTAAAACCAATTAAACTTAGGAAAGTAAAAGGTGAAAATGACAATTTTGGTGTGTTCAAGAACTTGGATTTTGGATGATATAATTTTGAATCCTCAATTGTTATTTGCAGAGCCAGAAGTCAATGTAAAGATGCTTCAACCACCAAGAAGTCAGAATGTTCTTCAAAGATTCTCCACCAAACCATTCAAAATTCTATCATCCTTAAAGATGGTAGATAGAAATGGCTTGTTTTCTCTTCTGATTCAATTGTTCGTAGTTACCTAA

mRNA sequence

ATGAGGCATCGGTTTGCTCTCACAGAGCCAGAAGTCAATGTAAAGATGCTTCAACCACCAAGAAGTCAGAATGTTCTTCAAAGATTCTCCACCAAACCATTCAAAATTCTATCATCCTTAAAGATGGTAGATAGAAATGGCTTGTTTTCTCTTCTGATTCAATTGTTCGTAGTTACCTAA

Coding sequence (CDS)

ATGAGGCATCGGTTTGCTCTCACAGAGCCAGAAGTCAATGTAAAGATGCTTCAACCACCAAGAAGTCAGAATGTTCTTCAAAGATTCTCCACCAAACCATTCAAAATTCTATCATCCTTAAAGATGGTAGATAGAAATGGCTTGTTTTCTCTTCTGATTCAATTGTTCGTAGTTACCTAA

Protein sequence

MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT
BLAST of CsaV3_2G015350 vs. NCBI nr
Match: KGN61859.1 (hypothetical protein Csa_2G252080 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 4.6e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1  MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT 60
          MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT
Sbjct: 1  MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT 59

BLAST of CsaV3_2G015350 vs. TrEMBL
Match: tr|A0A0A0LLC8|A0A0A0LLC8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252080 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1  MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT 60
          MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT
Sbjct: 1  MRHRFALTEPEVNVKMLQPPRSQNVLQRFSTKPFKILSSLKMVDRNGLFSLLIQLFVVT 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61859.14.6e-23100.00hypothetical protein Csa_2G252080 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LLC8|A0A0A0LLC8_CUCSA3.1e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252080 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G015350.1CsaV3_2G015350.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G015350CSPI02G12790Wild cucumber (PI 183967)cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G015350Cucumber (Chinese Long) v3cuccucB070
CsaV3_2G015350Cucumber (Chinese Long) v3cuccucB098
CsaV3_2G015350Silver-seed gourdcarcucB0346
CsaV3_2G015350Silver-seed gourdcarcucB0463
CsaV3_2G015350Silver-seed gourdcarcucB0863
CsaV3_2G015350Cucumber (Gy14) v2cgybcucB064
CsaV3_2G015350Cucumber (Gy14) v2cgybcucB318
CsaV3_2G015350Cucumber (Gy14) v1cgycucB138
CsaV3_2G015350Cucumber (Gy14) v1cgycucB522
CsaV3_2G015350Cucurbita maxima (Rimu)cmacucB0019
CsaV3_2G015350Cucurbita maxima (Rimu)cmacucB0527
CsaV3_2G015350Cucurbita maxima (Rimu)cmacucB0604
CsaV3_2G015350Cucurbita maxima (Rimu)cmacucB0651
CsaV3_2G015350Cucurbita maxima (Rimu)cmacucB0701
CsaV3_2G015350Cucurbita moschata (Rifu)cmocucB0007
CsaV3_2G015350Cucurbita moschata (Rifu)cmocucB0513
CsaV3_2G015350Cucurbita moschata (Rifu)cmocucB0590
CsaV3_2G015350Cucurbita moschata (Rifu)cmocucB0637
CsaV3_2G015350Cucurbita moschata (Rifu)cmocucB0687
CsaV3_2G015350Cucurbita pepo (Zucchini)cpecucB0062
CsaV3_2G015350Cucurbita pepo (Zucchini)cpecucB0289
CsaV3_2G015350Cucurbita pepo (Zucchini)cpecucB0334
CsaV3_2G015350Cucurbita pepo (Zucchini)cpecucB0680
CsaV3_2G015350Cucurbita pepo (Zucchini)cpecucB0879
CsaV3_2G015350Cucurbita pepo (Zucchini)cpecucB0961
CsaV3_2G015350Wild cucumber (PI 183967)cpicucB137
CsaV3_2G015350Wild cucumber (PI 183967)cpicucB384
CsaV3_2G015350Bottle gourd (USVL1VR-Ls)cuclsiB104
CsaV3_2G015350Bottle gourd (USVL1VR-Ls)cuclsiB134
CsaV3_2G015350Bottle gourd (USVL1VR-Ls)cuclsiB109
CsaV3_2G015350Melon (DHL92) v3.5.1cucmeB106
CsaV3_2G015350Melon (DHL92) v3.6.1cucmedB099
CsaV3_2G015350Watermelon (Charleston Gray)cucwcgB120
CsaV3_2G015350Watermelon (Charleston Gray)cucwcgB140
CsaV3_2G015350Watermelon (97103) v1cucwmB142
CsaV3_2G015350Watermelon (97103) v1cucwmB160
CsaV3_2G015350Watermelon (97103) v1cucwmB166
CsaV3_2G015350Watermelon (97103) v2cucwmbB115
CsaV3_2G015350Watermelon (97103) v2cucwmbB126
CsaV3_2G015350Wax gourdcucwgoB161
CsaV3_2G015350Wax gourdcucwgoB187