CsaV3_2G014880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G014880
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 12401572 .. 12401898 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCATCTGCCGCCCGCCTTCTCCGTACCGTCTCTCTTCCTTATCTTCCAGCTCTCCTCCCCCCCTCTCTTTCTCTCTCTTACAGCTTCTTTCTCCATTTCTTCTCACACCAAACGCCGTCACCACACATCAGACCACCGCCCAATTCTCCTCCTCCTCCTCCGTCCTTCGGGTTCGATCTCTCTCTTTCCTCGCGCTGGTCGCCGCTTTGTTGTTCCCGTCGCCGGAACAACCAAGGCAGCATCAGATCTTCCATGTCCAGCTCGTGTTGTGGCGTTACAGCCTTCTTCGCGCTATTTTCTTGTTACCTGCAGTTCGTTTGA

mRNA sequence

ATGAAATCATCTGCCGCCCGCCTTCTCCGTACCGTCTCTCTTCCTTATCTTCCAGCTCTCCTCCCCCCCTCTCTTTCTCTCTCTTACAGCTTCTTTCTCCATTTCTTCTCACACCAAACGCCGTCACCACACATCAGACCACCGCCCAATTCTCCTCCTCCTCCTCCGTCCTTCGGGTTCGATCTCTCTCTTTCCTCGCGCTGGTCGCCGCTTTGTTGTTCCCGTCGCCGGAACAACCAAGGCAGCATCAGATCTTCCATGTCCAGCTCGTGTTGTGGCGTTACAGCCTTCTTCGCGCTATTTTCTTGTTACCTGCAGTTCGTTTGA

Coding sequence (CDS)

ATGAAATCATCTGCCGCCCGCCTTCTCCGTACCGTCTCTCTTCCTTATCTTCCAGCTCTCCTCCCCCCCTCTCTTTCTCTCTCTTACAGCTTCTTTCTCCATTTCTTCTCACACCAAACGCCGTCACCACACATCAGACCACCGCCCAATTCTCCTCCTCCTCCTCCGTCCTTCGGGTTCGATCTCTCTCTTTCCTCGCGCTGGTCGCCGCTTTGTTGTTCCCGTCGCCGGAACAACCAAGGCAGCATCAGATCTTCCATGTCCAGCTCGTGTTGTGGCGTTACAGCCTTCTTCGCGCTATTTTCTTGTTACCTGCAGTTCGTTTGA

Protein sequence

MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRPPPNSPPPPPSFGFDLSLSSRWSPLCCSRRRNNQGSIRSSMSSSCCGVTAFFALFSCYLQFV
Homology
[Close]
BLAST of CsaV3_2G014880 vs. NCBI nr
Match: KGN61809.1 (hypothetical protein Csa_2G248660 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 1.8e-41
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRXXXXXXXXXXXFGF 60
           MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRXXXXXXXXXXXFGF
Sbjct: 1   MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRXXXXXXXXXXXFGF 60

Query: 61  DLSLSSRWSPLCCSRXXXXXGSIRSSMSSSCCGVTAFFALFSCYLQFV 109
           DLSLSSRWSPLCCSRXXXXXGSIRSSMSSSCCGVTAFFALFSCYLQFV
Sbjct: 61  DLSLSSRWSPLCCSRXXXXXGSIRSSMSSSCCGVTAFFALFSCYLQFV 108

[Close]
BLAST of CsaV3_2G014880 vs. TrEMBL
Match: tr|A0A0A0LL70|A0A0A0LL70_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G248660 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-41
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRXXXXXXXXXXXFGF 60
           MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRXXXXXXXXXXXFGF
Sbjct: 1   MKSSAARLLRTVSLPYLPALLPPSLSLSYSFFLHFFSHQTPSPHIRXXXXXXXXXXXFGF 60

Query: 61  DLSLSSRWSPLCCSRXXXXXGSIRSSMSSSCCGVTAFFALFSCYLQFV 109
           DLSLSSRWSPLCCSRXXXXXGSIRSSMSSSCCGVTAFFALFSCYLQFV
Sbjct: 61  DLSLSSRWSPLCCSRXXXXXGSIRSSMSSSCCGVTAFFALFSCYLQFV 108

The following BLAST results are available for this feature:
BLAST of CsaV3_2G014880 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61809.11.8e-41100.00hypothetical protein Csa_2G248660 [Cucumis sativus][more]
BLAST of CsaV3_2G014880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G014880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G014880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LL70|A0A0A0LL70_CUCSA1.2e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G248660 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G014880.1CsaV3_2G014880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G014880Cucumber (Chinese Long) v3cuccucB070
CsaV3_2G014880Cucumber (Chinese Long) v3cuccucB083
CsaV3_2G014880Cucumber (Chinese Long) v3cuccucB098
CsaV3_2G014880Silver-seed gourdcarcucB0346
CsaV3_2G014880Silver-seed gourdcarcucB0506
CsaV3_2G014880Cucumber (Gy14) v2cgybcucB064
CsaV3_2G014880Cucumber (Gy14) v2cgybcucB318
CsaV3_2G014880Cucumber (Gy14) v1cgycucB138
CsaV3_2G014880Cucumber (Gy14) v1cgycucB522
CsaV3_2G014880Cucumber (Gy14) v1cgycucB571
CsaV3_2G014880Cucurbita maxima (Rimu)cmacucB0019
CsaV3_2G014880Cucurbita maxima (Rimu)cmacucB0527
CsaV3_2G014880Cucurbita maxima (Rimu)cmacucB0651
CsaV3_2G014880Cucurbita maxima (Rimu)cmacucB0701
CsaV3_2G014880Cucurbita moschata (Rifu)cmocucB0007
CsaV3_2G014880Cucurbita moschata (Rifu)cmocucB0513
CsaV3_2G014880Cucurbita moschata (Rifu)cmocucB0590
CsaV3_2G014880Cucurbita moschata (Rifu)cmocucB0637
CsaV3_2G014880Cucurbita moschata (Rifu)cmocucB0687
CsaV3_2G014880Cucurbita pepo (Zucchini)cpecucB0289
CsaV3_2G014880Cucurbita pepo (Zucchini)cpecucB0334
CsaV3_2G014880Cucurbita pepo (Zucchini)cpecucB0680
CsaV3_2G014880Cucurbita pepo (Zucchini)cpecucB0879
CsaV3_2G014880Cucurbita pepo (Zucchini)cpecucB0961
CsaV3_2G014880Wild cucumber (PI 183967)cpicucB080
CsaV3_2G014880Wild cucumber (PI 183967)cpicucB137
CsaV3_2G014880Wild cucumber (PI 183967)cpicucB208
CsaV3_2G014880Wild cucumber (PI 183967)cpicucB384
CsaV3_2G014880Bottle gourd (USVL1VR-Ls)cuclsiB104
CsaV3_2G014880Bottle gourd (USVL1VR-Ls)cuclsiB134
CsaV3_2G014880Bottle gourd (USVL1VR-Ls)cuclsiB109
CsaV3_2G014880Bottle gourd (USVL1VR-Ls)cuclsiB151
CsaV3_2G014880Melon (DHL92) v3.5.1cucmeB097
CsaV3_2G014880Melon (DHL92) v3.5.1cucmeB106
CsaV3_2G014880Melon (DHL92) v3.6.1cucmedB089
CsaV3_2G014880Melon (DHL92) v3.6.1cucmedB099
CsaV3_2G014880Watermelon (Charleston Gray)cucwcgB120
CsaV3_2G014880Watermelon (Charleston Gray)cucwcgB140
CsaV3_2G014880Watermelon (Charleston Gray)cucwcgB167
CsaV3_2G014880Watermelon (97103) v1cucwmB134
CsaV3_2G014880Watermelon (97103) v1cucwmB142
CsaV3_2G014880Watermelon (97103) v1cucwmB160
CsaV3_2G014880Watermelon (97103) v1cucwmB166
CsaV3_2G014880Watermelon (97103) v2cucwmbB115
CsaV3_2G014880Watermelon (97103) v2cucwmbB126
CsaV3_2G014880Wax gourdcucwgoB154
CsaV3_2G014880Wax gourdcucwgoB187