CsaV3_2G014000 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G014000
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPeroxiredoxin Q, chloroplastic
Locationchr2 : 11597364 .. 11597544 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAATCGAAGCAACCTCAAGAGGGAAATCAAGACAATCAAGCCGTCCCGATGGGTGGTGCCTGTTTTTGATTGGTTGCAACGGCGAAGGGGCTTTGGCTTTGGGCCCTGAAGGCCCTTTGGTTGAGGAATTTTGGGATAATGTTAGAAGATACGCAATTTACGCCCTTACTGTGAGTACCG

mRNA sequence

ACAATCGAAGCAACCTCAAGAGGGAAATCAAGACAATCAAGCCGTCCCGATGGGTGGTGCCTGTTTTTGATTGGTTGCAACGGCGAAGGGGCTTTGGCTTTGGGCCCTGAAGGCCCTTTGGTTGAGGAATTTTGGGATAATGTTAGAAGATACGCAATTTACGCCCTTACTGTGAGTACCG

Coding sequence (CDS)

ACAATCGAAGCAACCTCAAGAGGGAAATCAAGACAATCAAGCCGTCCCGATGGGTGGTGCCTGTTTTTGATTGGTTGCAACGGCGAAGGGGCTTTGGCTTTGGGCCCTGAAGGCCCTTTGGTTGAGGAATTTTGGGATAATGTTAGAAGATACGCAATTTACGCCCTTACTGTGAGTACCG

Protein sequence

TIEATSRGKSRQSSRPDGWCLFLIGCNGEGALALGPEGPLVEEFWDNVRRYAIYALTVSTX
Homology
[Close]
BLAST of CsaV3_2G014000 vs. NCBI nr
Match: XP_004134802.1 (PREDICTED: uncharacterized protein LOC101208124 [Cucumis sativus] >KGN49043.1 hypothetical protein Csa_6G511100 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 7.3e-16
Identity = 47/63 (74.60%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   TIEATSRGKSR---QSSRPDGWCLFLIGCNGEGALALGPEGPLVEEFWDNVRRYAIYALT 60
           TIEAT  GKSR     +   G  LFLIGC+GE ALALGPEGPLVEEFWDNVRRYA+YALT
Sbjct: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALT 120

[Close]
BLAST of CsaV3_2G014000 vs. NCBI nr
Match: XP_008440084.1 (PREDICTED: uncharacterized protein LOC103484667 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-15
Identity = 47/63 (74.60%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 1   TIEATSRGKSR---QSSRPDGWCLFLIGCNGEGALALGPEGPLVEEFWDNVRRYAIYALT 60
           TIEAT  GKSR     +   G  LFLIGC+ E ALALGPEGPLVEEFWDNVRRYAIYALT
Sbjct: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDSERALALGPEGPLVEEFWDNVRRYAIYALT 120

[Close]
BLAST of CsaV3_2G014000 vs. NCBI nr
Match: XP_022979034.1 (uncharacterized protein LOC111478796 [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 18  GWCLFLIGCNGEGALALGPEGPLVEEFWDNVRRYAIYALTVST 61
           G  LFL+GCNGE ALALGPEGPLVEEFWDNVRRYAIYA+TVST
Sbjct: 86  GVALFLMGCNGERALALGPEGPLVEEFWDNVRRYAIYAVTVST 128

[Close]
BLAST of CsaV3_2G014000 vs. NCBI nr
Match: XP_023543366.1 (uncharacterized protein LOC111803269 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.6 bits (200), Expect = 9.9e-13
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 18  GWCLFLIGCNGEGALALGPEGPLVEEFWDNVRRYAIYALTVST 61
           G  LFL+GC+G+ ALALGPEGPLVEEFWDNVRRYAIYA+TVST
Sbjct: 86  GVALFLMGCDGDRALALGPEGPLVEEFWDNVRRYAIYAVTVST 128

[Close]
BLAST of CsaV3_2G014000 vs. NCBI nr
Match: XP_022949889.1 (uncharacterized protein LOC111453148 [Cucurbita moschata])

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 18  GWCLFLIGCNGEGALALGPEGPLVEEFWDNVRRYAIYALTVST 61
           G  LFL+GC+G+ ALALGPEGPLVEEFWDNVRRYAIYA+TVS+
Sbjct: 86  GVALFLMGCDGDRALALGPEGPLVEEFWDNVRRYAIYAVTVSS 128

[Close]
BLAST of CsaV3_2G014000 vs. TAIR10
Match: AT4G16410.1 (unknown protein)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-12
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 21  LFLIGCNGEGALALGPEGPLVEEFWDNVRRYAIYALTVST 61
           + ++G + E A+ALGPEGPL+EEFWDNVRRY +YALTVST
Sbjct: 93  VLVLGMDAEKAMALGPEGPLMEEFWDNVRRYGLYALTVST 132

[Close]
BLAST of CsaV3_2G014000 vs. TrEMBL
Match: tr|A0A0A0KHP7|A0A0A0KHP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511100 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.8e-16
Identity = 47/63 (74.60%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   TIEATSRGKSR---QSSRPDGWCLFLIGCNGEGALALGPEGPLVEEFWDNVRRYAIYALT 60
           TIEAT  GKSR     +   G  LFLIGC+GE ALALGPEGPLVEEFWDNVRRYA+YALT
Sbjct: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALT 120

[Close]
BLAST of CsaV3_2G014000 vs. TrEMBL
Match: tr|A0A1S3B114|A0A1S3B114_CUCME (uncharacterized protein LOC103484667 OS=Cucumis melo OX=3656 GN=LOC103484667 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-15
Identity = 47/63 (74.60%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 1   TIEATSRGKSR---QSSRPDGWCLFLIGCNGEGALALGPEGPLVEEFWDNVRRYAIYALT 60
           TIEAT  GKSR     +   G  LFLIGC+ E ALALGPEGPLVEEFWDNVRRYAIYALT
Sbjct: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDSERALALGPEGPLVEEFWDNVRRYAIYALT 120

[Close]
BLAST of CsaV3_2G014000 vs. TrEMBL
Match: tr|W9QKZ4|W9QKZ4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010590 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.0e-11
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 18  GWCLFLIGCNGEGALALGPEGPLVEEFWDNVRRYAIYALTVST 61
           G+ L L+G N + ALA GPEGPLVEEFWDNVRRYA+YALTVST
Sbjct: 105 GFVLLLMGVNDQKALAFGPEGPLVEEFWDNVRRYALYALTVST 147

[Close]
BLAST of CsaV3_2G014000 vs. TrEMBL
Match: tr|A0A2I4GHL7|A0A2I4GHL7_9ROSI (uncharacterized protein LOC109007940 OS=Juglans regia OX=51240 GN=LOC109007940 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.0e-11
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 18  GWCLFLIGCNGEGALALGPEGPLVEEFWDNVRRYAIYALTVST 61
           G  LFL+G + + ALALGPEGPL+EEFWDNVRRYA+YALTVST
Sbjct: 113 GLVLFLVGMDDQMALALGPEGPLMEEFWDNVRRYALYALTVST 155

[Close]
BLAST of CsaV3_2G014000 vs. TrEMBL
Match: tr|A0A2P2MEP7|A0A2P2MEP7_RHIMU (Uncharacterized protein MANES_17G002500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 0 

Query: 6   SRGKSRQSSRPDGW-------------CLFLIGCNGEGALALGPEGPLVEEFWDNVRRYA 61
           S+GK  Q S PDG+              L L+G + + ALALGPEGPLVEEFWDNVRRYA
Sbjct: 78  SKGKFLQVS-PDGYTRFVILGAASLGLALLLMGMDDQKALALGPEGPLVEEFWDNVRRYA 137

The following BLAST results are available for this feature:
BLAST of CsaV3_2G014000 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004134802.17.3e-1674.60PREDICTED: uncharacterized protein LOC101208124 [Cucumis sativus] >KGN49043.1 hy... [more]
XP_008440084.12.1e-1574.60PREDICTED: uncharacterized protein LOC103484667 [Cucumis melo][more]
XP_022979034.11.2e-1388.37uncharacterized protein LOC111478796 [Cucurbita maxima][more]
XP_023543366.19.9e-1383.72uncharacterized protein LOC111803269 [Cucurbita pepo subsp. pepo][more]
XP_022949889.12.9e-1281.40uncharacterized protein LOC111453148 [Cucurbita moschata][more]
BLAST of CsaV3_2G014000 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16410.12.0e-1270.00unknown protein[more]
BLAST of CsaV3_2G014000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G014000 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KHP7|A0A0A0KHP7_CUCSA4.8e-1674.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511100 PE=4 SV=1[more]
tr|A0A1S3B114|A0A1S3B114_CUCME1.4e-1574.60uncharacterized protein LOC103484667 OS=Cucumis melo OX=3656 GN=LOC103484667 PE=... [more]
tr|W9QKZ4|W9QKZ4_9ROSA8.0e-1176.74Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010590 PE=4 SV=1[more]
tr|A0A2I4GHL7|A0A2I4GHL7_9ROSI8.0e-1176.74uncharacterized protein LOC109007940 OS=Juglans regia OX=51240 GN=LOC109007940 P... [more]
tr|A0A2P2MEP7|A0A2P2MEP7_RHIMU1.4e-1058.82Uncharacterized protein MANES_17G002500 OS=Rhizophora mucronata OX=61149 PE=4 SV... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G014000.1CsaV3_2G014000.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36049FAMILY NOT NAMEDcoord: 21..60

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G014000Cucumber (Gy14) v2cgybcucB064
CsaV3_2G014000Cucumber (Gy14) v1cgycucB355
CsaV3_2G014000Wild cucumber (PI 183967)cpicucB080
CsaV3_2G014000Melon (DHL92) v3.6.1cucmedB098