CsaV3_2G013960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G013960
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionMyb/SANT-like domain containing protein
Locationchr2 : 11564395 .. 11564685 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTGGACAAATTCAAAAGCCATCGAGCATCGGTGGACAACCATTGAGGAGGAGGCATTAGTTGAGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTGACAATGGGACATTCAAAATAGGATATTTGGTACAAGTATAAAAACTAATGAAAGAAAAAATTCCTGGAAACAACATAAAAGTAACTCCAAATCTAGAGTTGAGAGTGAAAATTTTGAAGAAGCAGTACACTGCCATAGTAGAAATGATGGGGCCAACCTATAGCGGGTTTGGCTGGAATTAG

mRNA sequence

ATGCCGTGGACAAATTCAAAAGCCATCGAGCATCGGTGGACAACCATTGAGGAGGAGGCATTAGTTGAGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTGACAATGGGACATTCAAAATAGGATATTTGGTACAATTGAGAGTGAAAATTTTGAAGAAGCAGTACACTGCCATAGTAGAAATGATGGGGCCAACCTATAGCGGGTTTGGCTGGAATTAG

Coding sequence (CDS)

ATGCCGTGGACAAATTCAAAAGCCATCGAGCATCGGTGGACAACCATTGAGGAGGAGGCATTAGTTGAGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTGACAATGGGACATTCAAAATAGGATATTTGGTACAATTGAGAGTGAAAATTTTGAAGAAGCAGTACACTGCCATAGTAGAAATGATGGGGCCAACCTATAGCGGGTTTGGCTGGAATTAG

Protein sequence

MPWTNSKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQLRVKILKKQYTAIVEMMGPTYSGFGWN
Homology
[Close]
BLAST of CsaV3_2G013960 vs. NCBI nr
Match: KGN61713.1 (hypothetical protein Csa_2G231460 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MPWTNSKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQLRVKILKKQYTA 60
          MPWTNSKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQLRVKILKKQYTA
Sbjct: 1  MPWTNSKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQLRVKILKKQYTA 60

Query: 61 IVEMMGPTYSGFGWN 76
          IVEMMGPTYSGFGWN
Sbjct: 61 IVEMMGPTYSGFGWN 75

[Close]
BLAST of CsaV3_2G013960 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 57/96 (59.38%), Postives = 64/96 (66.67%), Query Frame = 0 

Query: 1   MPWTNSKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQL----------- 60
           M  TNSKA +HRWTTI+++ALVECLLQLVEEGGWRA+N TFK  YLVQ+           
Sbjct: 33  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

Query: 61  ----------RVKILKKQYTAIVEMMGPTYSGFGWN 76
                     RVK LKKQYTAI +MMGP  S FGWN
Sbjct: 93  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWN 128

[Close]
BLAST of CsaV3_2G013960 vs. NCBI nr
Match: XP_008462939.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 54/75 (72.00%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 1  MPWTNSKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQLRVKILKKQYTA 60
          M  T SKA +HRWTTIE+E LVECLLQLVEEGGWRADNGTFK GYL         KQYTA
Sbjct: 1  MASTYSKATKHRWTTIEDETLVECLLQLVEEGGWRADNGTFKPGYL---------KQYTA 60

Query: 61 IVEMMGPTYSGFGWN 76
          I EMMG   SGFGWN
Sbjct: 61 IAEMMGQACSGFGWN 66

[Close]
BLAST of CsaV3_2G013960 vs. NCBI nr
Match: XP_024022021.1 (uncharacterized protein LOC112091787 [Morus notabilis])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 50/102 (49.02%), Postives = 57/102 (55.88%), Query Frame = 0 

Query: 3   WTNSKAIE--------HRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQL----- 62
           W N+ A E        H+WTT+E+  LVECLL +   G W+ADNGTFK GYL QL     
Sbjct: 39  WRNNMAREIMDANVRKHQWTTLEDSKLVECLLDMANSGKWKADNGTFKPGYLQQLEKMMN 98

Query: 63  ----------------RVKILKKQYTAIVEMMGPTYSGFGWN 76
                           RVKILKKQY AI EM+GP  SGFGWN
Sbjct: 99  EKIPQCGLKAQPHIDSRVKILKKQYHAISEMLGPAGSGFGWN 140

[Close]
BLAST of CsaV3_2G013960 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 9.1e-16
Identity = 46/91 (50.55%), Postives = 54/91 (59.34%), Query Frame = 0 

Query: 6  SKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQLR--------------- 65
          S+A +H WT  EEE  VECL++LV  GGWR+DNGTF+ GYL QL+               
Sbjct: 5  SRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQES 64

Query: 66 ------VKILKKQYTAIVEMMGPTYSGFGWN 76
                VK LKK Y AI EM GP+ SGFGWN
Sbjct: 65 STIDCHVKSLKKTYHAIAEMRGPSCSGFGWN 95

[Close]
BLAST of CsaV3_2G013960 vs. TrEMBL
Match: tr|A0A0A0LIS4|A0A0A0LIS4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G231460 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 7.3e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MPWTNSKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQLRVKILKKQYTA 60
          MPWTNSKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQLRVKILKKQYTA
Sbjct: 1  MPWTNSKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQLRVKILKKQYTA 60

Query: 61 IVEMMGPTYSGFGWN 76
          IVEMMGPTYSGFGWN
Sbjct: 61 IVEMMGPTYSGFGWN 75

[Close]
BLAST of CsaV3_2G013960 vs. TrEMBL
Match: tr|A0A1S3C252|A0A1S3C252_CUCME (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.3e-22
Identity = 57/96 (59.38%), Postives = 64/96 (66.67%), Query Frame = 0 

Query: 1   MPWTNSKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQL----------- 60
           M  TNSKA +HRWTTI+++ALVECLLQLVEEGGWRA+N TFK  YLVQ+           
Sbjct: 33  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

Query: 61  ----------RVKILKKQYTAIVEMMGPTYSGFGWN 76
                     RVK LKKQYTAI +MMGP  S FGWN
Sbjct: 93  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWN 128

[Close]
BLAST of CsaV3_2G013960 vs. TrEMBL
Match: tr|A0A1S3CI24|A0A1S3CI24_CUCME (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.6e-22
Identity = 54/75 (72.00%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 1  MPWTNSKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQLRVKILKKQYTA 60
          M  T SKA +HRWTTIE+E LVECLLQLVEEGGWRADNGTFK GYL         KQYTA
Sbjct: 1  MASTYSKATKHRWTTIEDETLVECLLQLVEEGGWRADNGTFKPGYL---------KQYTA 60

Query: 61 IVEMMGPTYSGFGWN 76
          I EMMG   SGFGWN
Sbjct: 61 IAEMMGQACSGFGWN 66

[Close]
BLAST of CsaV3_2G013960 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.0e-16
Identity = 46/91 (50.55%), Postives = 54/91 (59.34%), Query Frame = 0 

Query: 6  SKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQLR--------------- 65
          S+A +H WT  EEE  VECL++LV  GGWR+DNGTF+ GYL QL+               
Sbjct: 5  SRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQES 64

Query: 66 ------VKILKKQYTAIVEMMGPTYSGFGWN 76
                VK LKK Y AI EM GP+ SGFGWN
Sbjct: 65 STIDCHVKSLKKTYHAIAEMRGPSCSGFGWN 95

[Close]
BLAST of CsaV3_2G013960 vs. TrEMBL
Match: tr|A0A0A0KNB4|A0A0A0KNB4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420360 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.9e-16
Identity = 52/96 (54.17%), Postives = 55/96 (57.29%), Query Frame = 0 

Query: 1  MPWTNSKAIEHRWTTIEEEALVECLLQLVEEGGWRADNGTFKIGYLVQL----------- 60
          M  TNSKA +HRWTTI             EEGGWRA NGTFK GYLVQ+           
Sbjct: 1  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGS 60

Query: 61 ----------RVKILKKQYTAIVEMMGPTYSGFGWN 76
                    RVKILKKQYTAIVEMMGP+ S FGWN
Sbjct: 61 NIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWN 83

The following BLAST results are available for this feature:
BLAST of CsaV3_2G013960 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61713.11.1e-37100.00hypothetical protein Csa_2G231460 [Cucumis sativus][more]
XP_008455678.11.1e-2159.38PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
XP_008462939.11.4e-2172.00PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
XP_024022021.11.1e-1649.02uncharacterized protein LOC112091787 [Morus notabilis][more]
XP_008441954.19.1e-1650.55PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
BLAST of CsaV3_2G013960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G013960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G013960 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIS4|A0A0A0LIS4_CUCSA7.3e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G231460 PE=4 SV=1[more]
tr|A0A1S3C252|A0A1S3C252_CUCME7.3e-2259.38uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P... [more]
tr|A0A1S3CI24|A0A1S3CI24_CUCME9.6e-2272.00uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 P... [more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME6.0e-1650.55uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|A0A0A0KNB4|A0A0A0KNB4_CUCSA7.9e-1654.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420360 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G013960.1CsaV3_2G013960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G013960MELO3C034777.2Melon (DHL92) v3.6.1cucmedB098
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G013960Cucumber (Gy14) v2cgybcucB064
CsaV3_2G013960Cucumber (Gy14) v1cgycucB355
CsaV3_2G013960Cucurbita moschata (Rifu)cmocucB0418
CsaV3_2G013960Cucurbita pepo (Zucchini)cpecucB0152
CsaV3_2G013960Wild cucumber (PI 183967)cpicucB080
CsaV3_2G013960Watermelon (Charleston Gray)cucwcgB160