CsaV3_2G013940 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G013940
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 11527091 .. 11527450 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGTTGGGACCTCATCACCATCCATATGGGGATAAATAAAAAGGGTGATGAGGGGAAAAACAAGAAGAGGGGGAAGCCTGAGGACCCAAGAGAAGATAACCATTTAAGGCTAAGGACTCCAATGATGTCTTTTCATGCACCCACCACCTTGGCCTCTACATCATTAGCAAGGCCTCCAAGGACAAACCACTCAAATTTCTCACAATTTCTCTTCCAAGTAATCCATGTTCTCCTATTCCAAACCTTACCAAATCCAAAGAAGTATAATGATTCGGTTGCAAAAGTGAGGATAGCCTCTCTAGATCCTCACCCTAAGAAACCTCCTTTTGTCGTTAAAATCAGTAGGATTTGCTAA

mRNA sequence

ATGGAAAGTTGGGACCTCATCACCATCCATATGGGGATAAATAAAAAGGGTGATGAGGGGAAAAACAAGAAGAGGGGGAAGCCTGAGGACCCAAGAGAAGATAACCATTTAAGGCTAAGGACTCCAATGATGTCTTTTCATGCACCCACCACCTTGGCCTCTACATCATTAGCAAGGCCTCCAAGGACAAACCACTCAAATTTCTCACAATTTCTCTTCCAAGTAATCCATGTTCTCCTATTCCAAACCTTACCAAATCCAAAGAAGTATAATGATTCGGTTGCAAAAGTGAGGATAGCCTCTCTAGATCCTCACCCTAAGAAACCTCCTTTTGTCGTTAAAATCAGTAGGATTTGCTAA

Coding sequence (CDS)

ATGGAAAGTTGGGACCTCATCACCATCCATATGGGGATAAATAAAAAGGGTGATGAGGGGAAAAACAAGAAGAGGGGGAAGCCTGAGGACCCAAGAGAAGATAACCATTTAAGGCTAAGGACTCCAATGATGTCTTTTCATGCACCCACCACCTTGGCCTCTACATCATTAGCAAGGCCTCCAAGGACAAACCACTCAAATTTCTCACAATTTCTCTTCCAAGTAATCCATGTTCTCCTATTCCAAACCTTACCAAATCCAAAGAAGTATAATGATTCGGTTGCAAAAGTGAGGATAGCCTCTCTAGATCCTCACCCTAAGAAACCTCCTTTTGTCGTTAAAATCAGTAGGATTTGCTAA

Protein sequence

MESWDLITIHMGINKKGDEGKNKKRGKPEDPREDNHLRLRTPMMSFHAPTTLASTSLARPPRTNHSNFSQFLFQVIHVLLFQTLPNPKKYNDSVAKVRIASLDPHPKKPPFVVKISRIC

Homology

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BLAST of CsaV3_2G013940 vs. NCBI nr
Match: KGN61711.1 (hypothetical protein Csa_2G230950 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 2.0e-62
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MESWDLITIHMGINKKGDEGKNKKRGKPEDPREDNHLRLRTPMMSFHAPTTLASTSLARP 60
           MESWDLITIHMGINKKGDEGKNKKRGKPEDPREDNHLRLRTPMMSFHAPTTLASTSLARP
Sbjct: 1   MESWDLITIHMGINKKGDEGKNKKRGKPEDPREDNHLRLRTPMMSFHAPTTLASTSLARP 60

Query: 61  PRTNHSNFSQFLFQVIHVLLFQTLPNPKKYNDSVAKVRIASLDPHPKKPPFVVKISRIC 120
           PRTNHSNFSQFLFQVIHVLLFQTLPNPKKYNDSVAKVRIASLDPHPKKPPFVVKISRIC
Sbjct: 61  PRTNHSNFSQFLFQVIHVLLFQTLPNPKKYNDSVAKVRIASLDPHPKKPPFVVKISRIC 119

[Close]

BLAST of CsaV3_2G013940 vs. TrEMBL
Match: tr|A0A0A0LNX9|A0A0A0LNX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G230950 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.4e-62
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MESWDLITIHMGINKKGDEGKNKKRGKPEDPREDNHLRLRTPMMSFHAPTTLASTSLARP 60
           MESWDLITIHMGINKKGDEGKNKKRGKPEDPREDNHLRLRTPMMSFHAPTTLASTSLARP
Sbjct: 1   MESWDLITIHMGINKKGDEGKNKKRGKPEDPREDNHLRLRTPMMSFHAPTTLASTSLARP 60

Query: 61  PRTNHSNFSQFLFQVIHVLLFQTLPNPKKYNDSVAKVRIASLDPHPKKPPFVVKISRIC 120
           PRTNHSNFSQFLFQVIHVLLFQTLPNPKKYNDSVAKVRIASLDPHPKKPPFVVKISRIC
Sbjct: 61  PRTNHSNFSQFLFQVIHVLLFQTLPNPKKYNDSVAKVRIASLDPHPKKPPFVVKISRIC 119

The following BLAST results are available for this feature:

BLAST of CsaV3_2G013940 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61711.1	2.0e-62	100.00	hypothetical protein Csa_2G230950 [Cucumis sativus]	[more]

BLAST of CsaV3_2G013940 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G013940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G013940 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNX9\|A0A0A0LNX9_CUCSA	1.4e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G230950 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G013940.1	CsaV3_2G013940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..37

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G013940	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G013940	Cucumber (Gy14) v1	cgycucB355
CsaV3_2G013940	Cucurbita moschata (Rifu)	cmocucB0418
CsaV3_2G013940	Cucurbita pepo (Zucchini)	cpecucB0152
CsaV3_2G013940	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G013940	Watermelon (Charleston Gray)	cucwcgB160