CsaV3_2G013130 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G013130
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 10684990 .. 10685190 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTAAATTTTCATCCATTCTTTAGGACAAAGGGAGAATCCAAGAAATCCAAGCTACAAAACAAGTACCGTAACTCATCTCACGCGACGGCCTCTCACGAGCAAATCCATCACGCGACCAAACCCATCTCTGAAATCTGTTCAAACGATTACGACGGCGATATTGGAATTACAACGATGATTTCTCATCTCAAATGA

mRNA sequence

ATGAATTTAAATTTTCATCCATTCTTTAGGACAAAGGGAGAATCCAAGAAATCCAAGCTACAAAACAAGTACCGTAACTCATCTCACGCGACGGCCTCTCACGAGCAAATCCATCACGCGACCAAACCCATCTCTGAAATCTGTTCAAACGATTACGACGGCGATATTGGAATTACAACGATGATTTCTCATCTCAAATGA

Coding sequence (CDS)

ATGAATTTAAATTTTCATCCATTCTTTAGGACAAAGGGAGAATCCAAGAAATCCAAGCTACAAAACAAGTACCGTAACTCATCTCACGCGACGGCCTCTCACGAGCAAATCCATCACGCGACCAAACCCATCTCTGAAATCTGTTCAAACGATTACGACGGCGATATTGGAATTACAACGATGATTTCTCATCTCAAATGA

Protein sequence

MNLNFHPFFRTKGESKKSKLQNKYRNSSHATASHEQIHHATKPISEICSNDYDGDIGITTMISHLK
Homology
[Close]
BLAST of CsaV3_2G013130 vs. NCBI nr
Match: KGN61635.1 (hypothetical protein Csa_2G193880 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 9.7e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MNLNFHPFFRTKGESKKSKLQNKYRNSSHATASHEQIHHATKPISEICSNDYDGDIGITT 60
          MNLNFHPFFRTKGESKKSKLQNKYRNSSHATASHEQIHHATKPISEICSNDYDGDIGITT
Sbjct: 1  MNLNFHPFFRTKGESKKSKLQNKYRNSSHATASHEQIHHATKPISEICSNDYDGDIGITT 60

Query: 61 MISHLK 67
          MISHLK
Sbjct: 61 MISHLK 66

[Close]
BLAST of CsaV3_2G013130 vs. TrEMBL
Match: tr|A0A0A0LIA1|A0A0A0LIA1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G193880 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.4e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MNLNFHPFFRTKGESKKSKLQNKYRNSSHATASHEQIHHATKPISEICSNDYDGDIGITT 60
          MNLNFHPFFRTKGESKKSKLQNKYRNSSHATASHEQIHHATKPISEICSNDYDGDIGITT
Sbjct: 1  MNLNFHPFFRTKGESKKSKLQNKYRNSSHATASHEQIHHATKPISEICSNDYDGDIGITT 60

Query: 61 MISHLK 67
          MISHLK
Sbjct: 61 MISHLK 66

The following BLAST results are available for this feature:
BLAST of CsaV3_2G013130 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61635.19.7e-30100.00hypothetical protein Csa_2G193880 [Cucumis sativus][more]
BLAST of CsaV3_2G013130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G013130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G013130 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIA1|A0A0A0LIA1_CUCSA6.4e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G193880 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G013130.1CsaV3_2G013130.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G013130Cucumber (Chinese Long) v3cuccucB067
CsaV3_2G013130Silver-seed gourdcarcucB0258
CsaV3_2G013130Silver-seed gourdcarcucB0265
CsaV3_2G013130Silver-seed gourdcarcucB0354
CsaV3_2G013130Silver-seed gourdcarcucB0786
CsaV3_2G013130Silver-seed gourdcarcucB1001
CsaV3_2G013130Cucumber (Gy14) v2cgybcucB064
CsaV3_2G013130Cucumber (Gy14) v2cgybcucB109
CsaV3_2G013130Cucumber (Gy14) v1cgycucB385
CsaV3_2G013130Cucumber (Gy14) v1cgycucB588
CsaV3_2G013130Cucurbita maxima (Rimu)cmacucB0277
CsaV3_2G013130Cucurbita maxima (Rimu)cmacucB0418
CsaV3_2G013130Cucurbita maxima (Rimu)cmacucB0611
CsaV3_2G013130Cucurbita maxima (Rimu)cmacucB0964
CsaV3_2G013130Cucurbita maxima (Rimu)cmacucB1043
CsaV3_2G013130Cucurbita moschata (Rifu)cmocucB0267
CsaV3_2G013130Cucurbita moschata (Rifu)cmocucB0413
CsaV3_2G013130Cucurbita moschata (Rifu)cmocucB0952
CsaV3_2G013130Cucurbita moschata (Rifu)cmocucB1026
CsaV3_2G013130Cucurbita pepo (Zucchini)cpecucB0145
CsaV3_2G013130Cucurbita pepo (Zucchini)cpecucB0295
CsaV3_2G013130Cucurbita pepo (Zucchini)cpecucB0377
CsaV3_2G013130Cucurbita pepo (Zucchini)cpecucB0746
CsaV3_2G013130Cucurbita pepo (Zucchini)cpecucB0889
CsaV3_2G013130Cucurbita pepo (Zucchini)cpecucB1045
CsaV3_2G013130Wild cucumber (PI 183967)cpicucB080
CsaV3_2G013130Wild cucumber (PI 183967)cpicucB134
CsaV3_2G013130Bottle gourd (USVL1VR-Ls)cuclsiB098
CsaV3_2G013130Bottle gourd (USVL1VR-Ls)cuclsiB139
CsaV3_2G013130Bottle gourd (USVL1VR-Ls)cuclsiB140
CsaV3_2G013130Melon (DHL92) v3.5.1cucmeB143
CsaV3_2G013130Melon (DHL92) v3.5.1cucmeB147
CsaV3_2G013130Melon (DHL92) v3.6.1cucmedB136
CsaV3_2G013130Melon (DHL92) v3.6.1cucmedB140
CsaV3_2G013130Watermelon (Charleston Gray)cucwcgB148
CsaV3_2G013130Watermelon (Charleston Gray)cucwcgB161
CsaV3_2G013130Watermelon (Charleston Gray)cucwcgB168
CsaV3_2G013130Watermelon (97103) v1cucwmB130
CsaV3_2G013130Watermelon (97103) v1cucwmB136
CsaV3_2G013130Watermelon (97103) v1cucwmB184
CsaV3_2G013130Watermelon (97103) v2cucwmbB132
CsaV3_2G013130Watermelon (97103) v2cucwmbB155
CsaV3_2G013130Watermelon (97103) v2cucwmbB134
CsaV3_2G013130Watermelon (97103) v2cucwmbB148
CsaV3_2G013130Wax gourdcucwgoB135