CsaV3_2G013010 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G013010
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	protein RALF-like 30
Location	chr2 : 10571662 .. 10571830 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCGTGGTTGATATGTTTGGCCTTAATAAGCATGTTGGTCGTGGGCCAAGAGGTAGCAGCAGAGACAAAACACCTTAAATTTATCGATCCTTGCAATCAACCTTCTCCACCTCCAACTTGTCCTAAAAGGGATAAAGTGGAGGAGGCAAACCCCTACAATAGAG

mRNA sequence

ATGAAATCGTGGTTGATATGTTTGGCCTTAATAAGCATGTTGGTCGTGGGCCAAGAGGTAGCAGCAGAGACAAAACACCTTAAATTTATCGATCCTTGCAATCAACCTTCTCCACCTCCAACTTGTCCTAAAAGGGATAAAGTGGAGGAGGCAAACCCCTACAATAGAG

Coding sequence (CDS)

ATGAAATCGTGGTTGATATGTTTGGCCTTAATAAGCATGTTGGTCGTGGGCCAAGAGGTAGCAGCAGAGACAAAACACCTTAAATTTATCGATCCTTGCAATCAACCTTCTCCACCTCCAACTTGTCCTAAAAGGGATAAAGTGGAGGAGGCAAACCCCTACAATAGAG

Protein sequence

MKSWLICLALISMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPKRDKVEEANPYNRX

Homology

[Close]

BLAST of CsaV3_2G013010 vs. NCBI nr
Match: KGN61625.1 (hypothetical protein Csa_2G191310 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-23
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MKSWLICLALISMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPKRDKVEEANPYNR 57
          MKSWLICLALI MLVVGQEVAAETKHLKFIDPCNQPSPPPTCP RDKVEEANPYNR
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNR 56

[Close]

BLAST of CsaV3_2G013010 vs. NCBI nr
Match: XP_016900883.1 (PREDICTED: protein RALF-like 30 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-11
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1  MKSWLICLALISMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPKRDKVEEANPYNR 57
          MKSWLIC AL+SMLV+G EVAA+TK LKF+DPC QPSPP +C K ++V+    Y+R
Sbjct: 1  MKSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPSPPRSCYKHERVDSPIAYDR 56

[Close]

BLAST of CsaV3_2G013010 vs. NCBI nr
Match: XP_022947821.1 (protein RALF-like 10 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-10
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 1  MKSWLICLALISMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPKRDKVEEANPYNR 57
          M+SWLICL LI MLVV Q+VA+ETK LKF DPC QP+PPP C   + V  ANPY R
Sbjct: 1  MRSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCSIGNAV-PANPYRR 55

[Close]

BLAST of CsaV3_2G013010 vs. NCBI nr
Match: XP_023533089.1 (protein RALF-like 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 9.5e-10
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 1  MKSWLICLALISMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPKRDKVEEANPYNR 57
          M+SWLIC+ LISMLVV QEVA+ETK LKF DPC QP+PP  C   + V  ANPY R
Sbjct: 1  MRSWLICIVLISMLVVSQEVASETKFLKFPDPCQQPNPPLGCSIGNAV-PANPYRR 55

[Close]

BLAST of CsaV3_2G013010 vs. NCBI nr
Match: KGN66777.1 (hypothetical protein Csa_1G690160 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 1  MKSWLICLALISMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPKRDKVE-EANPYNR 57
          MKSWLIC+  ISMLV+ QEV A+T HLKF +PC+ PSPPP+C  + K     NPY+R
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDR 57

[Close]

BLAST of CsaV3_2G013010 vs. TrEMBL
Match: tr|A0A0A0LI94|A0A0A0LI94_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.8e-23
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MKSWLICLALISMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPKRDKVEEANPYNR 57
          MKSWLICLALI MLVVGQEVAAETKHLKFIDPCNQPSPPPTCP RDKVEEANPYNR
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNR 56

[Close]

BLAST of CsaV3_2G013010 vs. TrEMBL
Match: tr|A0A1S4DY33|A0A1S4DY33_CUCME (protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1  MKSWLICLALISMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPKRDKVEEANPYNR 57
          MKSWLIC AL+SMLV+G EVAA+TK LKF+DPC QPSPP +C K ++V+    Y+R
Sbjct: 1  MKSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPSPPRSCYKHERVDSPIAYDR 56

[Close]

BLAST of CsaV3_2G013010 vs. TrEMBL
Match: tr|A0A0A0M0X3|A0A0A0M0X3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.2e-10
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 1  MKSWLICLALISMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPKRDKVE-EANPYNR 57
          MKSWLIC+  ISMLV+ QEV A+T HLKF +PC+ PSPPP+C  + K     NPY+R
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDR 57

[Close]

BLAST of CsaV3_2G013010 vs. TrEMBL
Match: tr|A0A0A0LZK3|A0A0A0LZK3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-09
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1  MKSWLICLALISMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPKRDKVEEANPYNR 57
          MKSWLIC AL+SMLV+  EVAAE K L F D C QPSPP +C K ++ +   PY+R
Sbjct: 34 MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPIPYDR 89

The following BLAST results are available for this feature:

BLAST of CsaV3_2G013010 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61625.1	5.8e-23	96.43	hypothetical protein Csa_2G191310 [Cucumis sativus]	[more]
XP_016900883.1	1.7e-11	64.29	PREDICTED: protein RALF-like 30 [Cucumis melo]	[more]
XP_022947821.1	2.5e-10	66.07	protein RALF-like 10 [Cucurbita moschata]	[more]
XP_023533089.1	9.5e-10	66.07	protein RALF-like 10 [Cucurbita pepo subsp. pepo]	[more]
KGN66777.1	1.2e-09	59.65	hypothetical protein Csa_1G690160 [Cucumis sativus]	[more]

BLAST of CsaV3_2G013010 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G013010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G013010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LI94\|A0A0A0LI94_CUCSA	3.8e-23	96.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=4 SV=1	[more]
tr\|A0A1S4DY33\|A0A1S4DY33_CUCME	1.1e-11	64.29	protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=4 SV=1	[more]
tr\|A0A0A0M0X3\|A0A0A0M0X3_CUCSA	8.2e-10	59.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=4 SV=1	[more]
tr\|A0A0A0LZK3\|A0A0A0LZK3_CUCSA	9.1e-09	58.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G013010.1	CsaV3_2G013010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..57

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G013010	CSPI02G10610	Wild cucumber (PI 183967)	cpicucB080

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G013010	Wax gourd	cucwgoB129
CsaV3_2G013010	Cucumber (Chinese Long) v3	cuccucB067
CsaV3_2G013010	Silver-seed gourd	carcucB0258
CsaV3_2G013010	Silver-seed gourd	carcucB0265
CsaV3_2G013010	Silver-seed gourd	carcucB0786
CsaV3_2G013010	Silver-seed gourd	carcucB1001
CsaV3_2G013010	Silver-seed gourd	carcucB1123
CsaV3_2G013010	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G013010	Cucumber (Gy14) v2	cgybcucB109
CsaV3_2G013010	Cucumber (Gy14) v1	cgycucB581
CsaV3_2G013010	Cucurbita maxima (Rimu)	cmacucB0277
CsaV3_2G013010	Cucurbita maxima (Rimu)	cmacucB0418
CsaV3_2G013010	Cucurbita maxima (Rimu)	cmacucB0611
CsaV3_2G013010	Cucurbita maxima (Rimu)	cmacucB0964
CsaV3_2G013010	Cucurbita maxima (Rimu)	cmacucB1043
CsaV3_2G013010	Cucurbita moschata (Rifu)	cmocucB0267
CsaV3_2G013010	Cucurbita moschata (Rifu)	cmocucB0413
CsaV3_2G013010	Cucurbita moschata (Rifu)	cmocucB0952
CsaV3_2G013010	Cucurbita moschata (Rifu)	cmocucB1026
CsaV3_2G013010	Cucurbita pepo (Zucchini)	cpecucB0145
CsaV3_2G013010	Cucurbita pepo (Zucchini)	cpecucB0295
CsaV3_2G013010	Cucurbita pepo (Zucchini)	cpecucB0377
CsaV3_2G013010	Cucurbita pepo (Zucchini)	cpecucB0746
CsaV3_2G013010	Cucurbita pepo (Zucchini)	cpecucB0889
CsaV3_2G013010	Cucurbita pepo (Zucchini)	cpecucB1045
CsaV3_2G013010	Wild cucumber (PI 183967)	cpicucB134
CsaV3_2G013010	Bottle gourd (USVL1VR-Ls)	cuclsiB098
CsaV3_2G013010	Bottle gourd (USVL1VR-Ls)	cuclsiB139
CsaV3_2G013010	Bottle gourd (USVL1VR-Ls)	cuclsiB140
CsaV3_2G013010	Melon (DHL92) v3.5.1	cucmeB143
CsaV3_2G013010	Melon (DHL92) v3.5.1	cucmeB147
CsaV3_2G013010	Melon (DHL92) v3.6.1	cucmedB136
CsaV3_2G013010	Melon (DHL92) v3.6.1	cucmedB140
CsaV3_2G013010	Watermelon (Charleston Gray)	cucwcgB148
CsaV3_2G013010	Watermelon (Charleston Gray)	cucwcgB161
CsaV3_2G013010	Watermelon (Charleston Gray)	cucwcgB168
CsaV3_2G013010	Watermelon (97103) v1	cucwmB130
CsaV3_2G013010	Watermelon (97103) v1	cucwmB136
CsaV3_2G013010	Watermelon (97103) v1	cucwmB184
CsaV3_2G013010	Watermelon (97103) v2	cucwmbB132
CsaV3_2G013010	Watermelon (97103) v2	cucwmbB155
CsaV3_2G013010	Watermelon (97103) v2	cucwmbB134
CsaV3_2G013010	Watermelon (97103) v2	cucwmbB148