CsaV3_2G012860 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G012860
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 10409144 .. 10409476 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAACAGAAGGGGTTTAGAGTTGGATCTCGTCCTATCATGTGGAGTCTTGGACAAGATTGAAGACATAAGGTTGATCTCAGAGGAGAACAATCTCGATACTGGTTCGATCGAGATGAAATACAAAATGCTTAAGAAGTGTAATCTCAAGACAATCTTAGTGCTGGTTCGACTGAGATTAGAAGAAGAGAAAGAAAATTAGAAAAATCTTGGACAATCTCGGGCAATCTTGGATACGCGAGTCTGACAGAGATTATTGAAGACAAAAGATGAAATTGAAGGATCTCAGAGCTATCTTGGGGTTATGTCGGTTGAGACTAGAGACAAATAA

mRNA sequence

ATGAAAAACAGAAGGGGTTTAGAGTTGGATCTCGTCCTATCATGTGGAGTCTTGGACAAGATTGAAGACATAAGGTTGATCTCAGAGGAGAACAATCTCGATACTGGTTCGATCGAGATGAAATACAAAATGCTTAAGAAGTGTAATCTCAAGACAATCTTAGTGCTGAGATTATTGAAGACAAAAGATGAAATTGAAGGATCTCAGAGCTATCTTGGGGTTATGTCGGTTGAGACTAGAGACAAATAA

Coding sequence (CDS)

ATGAAAAACAGAAGGGGTTTAGAGTTGGATCTCGTCCTATCATGTGGAGTCTTGGACAAGATTGAAGACATAAGGTTGATCTCAGAGGAGAACAATCTCGATACTGGTTCGATCGAGATGAAATACAAAATGCTTAAGAAGTGTAATCTCAAGACAATCTTAGTGCTGAGATTATTGAAGACAAAAGATGAAATTGAAGGATCTCAGAGCTATCTTGGGGTTATGTCGGTTGAGACTAGAGACAAATAA

Protein sequence

MKNRRGLELDLVLSCGVLDKIEDIRLISEENNLDTGSIEMKYKMLKKCNLKTILVLRLLKTKDEIEGSQSYLGVMSVETRDK
Homology
[Close]
BLAST of CsaV3_2G012860 vs. NCBI nr
Match: KGN61608.1 (hypothetical protein Csa_2G177200 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 3.9e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MKNRRGLELDLVLSCGVLDKIEDIRLISEENNLDTGSIEMKYKMLKKCNLKTILVLRLLK 60
          MKNRRGLELDLVLSCGVLDKIEDIRLISEENNLDTGSIEMKYKMLKKCNLKTILVLRLLK
Sbjct: 1  MKNRRGLELDLVLSCGVLDKIEDIRLISEENNLDTGSIEMKYKMLKKCNLKTILVLRLLK 60

Query: 61 TKDEIEGSQSYLGVMSVETRDK 83
          TKDEIEGSQSYLGVMSVETRDK
Sbjct: 61 TKDEIEGSQSYLGVMSVETRDK 82

[Close]
BLAST of CsaV3_2G012860 vs. TrEMBL
Match: tr|A0A0A0LIJ0|A0A0A0LIJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G177200 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.6e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MKNRRGLELDLVLSCGVLDKIEDIRLISEENNLDTGSIEMKYKMLKKCNLKTILVLRLLK 60
          MKNRRGLELDLVLSCGVLDKIEDIRLISEENNLDTGSIEMKYKMLKKCNLKTILVLRLLK
Sbjct: 1  MKNRRGLELDLVLSCGVLDKIEDIRLISEENNLDTGSIEMKYKMLKKCNLKTILVLRLLK 60

Query: 61 TKDEIEGSQSYLGVMSVETRDK 83
          TKDEIEGSQSYLGVMSVETRDK
Sbjct: 61 TKDEIEGSQSYLGVMSVETRDK 82

The following BLAST results are available for this feature:
BLAST of CsaV3_2G012860 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61608.13.9e-36100.00hypothetical protein Csa_2G177200 [Cucumis sativus][more]
BLAST of CsaV3_2G012860 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G012860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G012860 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIJ0|A0A0A0LIJ0_CUCSA2.6e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G177200 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G012860.1CsaV3_2G012860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G012860Watermelon (97103) v2cucwmbB155
CsaV3_2G012860Watermelon (97103) v2cucwmbB134
CsaV3_2G012860Watermelon (97103) v2cucwmbB148
CsaV3_2G012860Wax gourdcucwgoB129
CsaV3_2G012860Wax gourdcucwgoB150
CsaV3_2G012860Wax gourdcucwgoB155
CsaV3_2G012860Cucumber (Chinese Long) v3cuccucB067
CsaV3_2G012860Cucumber (Chinese Long) v3cuccucB073
CsaV3_2G012860Silver-seed gourdcarcucB0258
CsaV3_2G012860Silver-seed gourdcarcucB0265
CsaV3_2G012860Silver-seed gourdcarcucB0786
CsaV3_2G012860Silver-seed gourdcarcucB0814
CsaV3_2G012860Silver-seed gourdcarcucB1001
CsaV3_2G012860Silver-seed gourdcarcucB1123
CsaV3_2G012860Cucumber (Gy14) v2cgybcucB064
CsaV3_2G012860Cucumber (Gy14) v2cgybcucB109
CsaV3_2G012860Cucumber (Gy14) v1cgycucB384
CsaV3_2G012860Cucumber (Gy14) v1cgycucB581
CsaV3_2G012860Cucurbita maxima (Rimu)cmacucB0277
CsaV3_2G012860Cucurbita maxima (Rimu)cmacucB0418
CsaV3_2G012860Cucurbita maxima (Rimu)cmacucB0611
CsaV3_2G012860Cucurbita maxima (Rimu)cmacucB0698
CsaV3_2G012860Cucurbita moschata (Rifu)cmocucB0595
CsaV3_2G012860Cucurbita maxima (Rimu)cmacucB0964
CsaV3_2G012860Cucurbita maxima (Rimu)cmacucB1043
CsaV3_2G012860Cucurbita moschata (Rifu)cmocucB0267
CsaV3_2G012860Cucurbita moschata (Rifu)cmocucB0413
CsaV3_2G012860Cucurbita moschata (Rifu)cmocucB0683
CsaV3_2G012860Cucurbita moschata (Rifu)cmocucB0952
CsaV3_2G012860Cucurbita moschata (Rifu)cmocucB1026
CsaV3_2G012860Cucurbita pepo (Zucchini)cpecucB0145
CsaV3_2G012860Cucurbita pepo (Zucchini)cpecucB0295
CsaV3_2G012860Cucurbita pepo (Zucchini)cpecucB0377
CsaV3_2G012860Cucurbita pepo (Zucchini)cpecucB0746
CsaV3_2G012860Cucurbita pepo (Zucchini)cpecucB0889
CsaV3_2G012860Cucurbita pepo (Zucchini)cpecucB1045
CsaV3_2G012860Wild cucumber (PI 183967)cpicucB080
CsaV3_2G012860Wild cucumber (PI 183967)cpicucB134
CsaV3_2G012860Wild cucumber (PI 183967)cpicucB138
CsaV3_2G012860Bottle gourd (USVL1VR-Ls)cuclsiB098
CsaV3_2G012860Bottle gourd (USVL1VR-Ls)cuclsiB139
CsaV3_2G012860Bottle gourd (USVL1VR-Ls)cuclsiB140
CsaV3_2G012860Melon (DHL92) v3.5.1cucmeB143
CsaV3_2G012860Melon (DHL92) v3.5.1cucmeB147
CsaV3_2G012860Melon (DHL92) v3.6.1cucmedB136
CsaV3_2G012860Melon (DHL92) v3.6.1cucmedB140
CsaV3_2G012860Watermelon (Charleston Gray)cucwcgB148
CsaV3_2G012860Watermelon (Charleston Gray)cucwcgB161
CsaV3_2G012860Watermelon (Charleston Gray)cucwcgB168
CsaV3_2G012860Watermelon (97103) v1cucwmB130
CsaV3_2G012860Watermelon (97103) v1cucwmB136
CsaV3_2G012860Watermelon (97103) v1cucwmB184