CsaV3_2G012820 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G012820
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPathogen induced 4 protein
Locationchr2 : 10365256 .. 10365555 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAGAAGTATTTGGTTATTCTTCTTCTTCTTGGAGTGATTCTTCTTAGCACCCAAGTTGTTGCTCGACCTTATTACCTGTCGGAGAACCACCACAAACTCACTCCCTCCGCCACCGTCTCAGCCGCATATTGGAAAGTAGTCATACCCTTTTTTAAGAAACATTTTCACAAAAAATCTCCCAAAAAATCTCCCAAAAAATCTCCCAAATTCCCAAAAGTCAAATCGCCACCACCATCGCCACCGCCACCGCCACCTCGACCAGTACGCAGTTGGAGACCACCTTCTTCGAACTGA

mRNA sequence

ATGTCTCAGAAGTATTTGGTTATTCTTCTTCTTCTTGGAGTGATTCTTCTTAGCACCCAAGTTGTTGCTCGACCTTATTACCTGTCGGAGAACCACCACAAACTCACTCCCTCCGCCACCGTCTCAGCCGCATATTGGAAAGTAGTCATACCCTTTTTTAAGAAACATTTTCACAAAAAATCTCCCAAAAAATCTCCCAAAAAATCTCCCAAATTCCCAAAAGTCAAATCGCCACCACCATCGCCACCGCCACCGCCACCTCGACCAGTACGCAGTTGGAGACCACCTTCTTCGAACTGA

Coding sequence (CDS)

ATGTCTCAGAAGTATTTGGTTATTCTTCTTCTTCTTGGAGTGATTCTTCTTAGCACCCAAGTTGTTGCTCGACCTTATTACCTGTCGGAGAACCACCACAAACTCACTCCCTCCGCCACCGTCTCAGCCGCATATTGGAAAGTAGTCATACCCTTTTTTAAGAAACATTTTCACAAAAAATCTCCCAAAAAATCTCCCAAAAAATCTCCCAAATTCCCAAAAGTCAAATCGCCACCACCATCGCCACCGCCACCGCCACCTCGACCAGTACGCAGTTGGAGACCACCTTCTTCGAACTGA

Protein sequence

MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAYWKVVIPFFKKHFHKKSPKKSPKKSPKFPKVKSPPPSPPPPPPRPVRSWRPPSSN
Homology
[Close]
BLAST of CsaV3_2G012820 vs. NCBI nr
Match: KGN61604.1 (hypothetical protein Csa_2G176180 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-24
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAYWKVVIPFFKKHXXXX 60
           MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAYWKVVIPFFKKHXXXX
Sbjct: 1   MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAYWKVVIPFFKKHXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSWRPPSSN 100
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSWRPPSSN
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSWRPPSSN 99

[Close]
BLAST of CsaV3_2G012820 vs. NCBI nr
Match: ABF19725.1 (pathogen induced 4 protein [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 8.3e-09
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 1  MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAA 45
          MS K+LVI LLLGVILLSTQV+ARPYYLSENHH+LTPSATV +A
Sbjct: 1  MSHKHLVI-LLLGVILLSTQVIARPYYLSENHHRLTPSATVPSA 43

[Close]
BLAST of CsaV3_2G012820 vs. NCBI nr
Match: XP_016902583.1 (PREDICTED: uncharacterized protein LOC107991740 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 1  MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAYWK---VVIPFFKKH 57
          MS K+LVILLL  ++L STQV+AR YYL ENHH+LTPSATV +A  K    + P+ KK+
Sbjct: 1  MSHKHLVILLLGVILLSSTQVIARTYYLPENHHRLTPSATVPSAVGKSLPKLPPWLKKN 59

[Close]
BLAST of CsaV3_2G012820 vs. TrEMBL
Match: tr|A0A0A0LKM8|A0A0A0LKM8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176180 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-24
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAYWKVVIPFFKKHXXXX 60
           MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAYWKVVIPFFKKHXXXX
Sbjct: 1   MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAYWKVVIPFFKKHXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSWRPPSSN 100
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSWRPPSSN
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSWRPPSSN 99

[Close]
BLAST of CsaV3_2G012820 vs. TrEMBL
Match: tr|A0MCW3|A0MCW3_CUCSA (Pathogen induced 4 protein OS=Cucumis sativus OX=3659 GN=pi4 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 1  MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAA 45
          MS K+LVI LLLGVILLSTQV+ARPYYLSENHH+LTPSATV +A
Sbjct: 1  MSHKHLVI-LLLGVILLSTQVIARPYYLSENHHRLTPSATVPSA 43

[Close]
BLAST of CsaV3_2G012820 vs. TrEMBL
Match: tr|A0A1S4E2Y7|A0A1S4E2Y7_CUCME (uncharacterized protein LOC107991740 OS=Cucumis melo OX=3656 GN=LOC107991740 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 1  MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAYWK---VVIPFFKKH 57
          MS K+LVILLL  ++L STQV+AR YYL ENHH+LTPSATV +A  K    + P+ KK+
Sbjct: 1  MSHKHLVILLLGVILLSSTQVIARTYYLPENHHRLTPSATVPSAVGKSLPKLPPWLKKN 59

The following BLAST results are available for this feature:
BLAST of CsaV3_2G012820 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61604.13.1e-24100.00hypothetical protein Csa_2G176180 [Cucumis sativus][more]
ABF19725.18.3e-0984.09pathogen induced 4 protein [Cucumis sativus][more]
XP_016902583.13.0e-0659.32PREDICTED: uncharacterized protein LOC107991740 [Cucumis melo][more]
BLAST of CsaV3_2G012820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G012820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G012820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKM8|A0A0A0LKM8_CUCSA2.1e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176180 PE=4 SV=1[more]
tr|A0MCW3|A0MCW3_CUCSA5.5e-0984.09Pathogen induced 4 protein OS=Cucumis sativus OX=3659 GN=pi4 PE=2 SV=1[more]
tr|A0A1S4E2Y7|A0A1S4E2Y7_CUCME2.0e-0659.32uncharacterized protein LOC107991740 OS=Cucumis melo OX=3656 GN=LOC107991740 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G012820.1CsaV3_2G012820.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G012820CSPI02G10390Wild cucumber (PI 183967)cpicucB080
CsaV3_2G012820MELO3C022989Melon (DHL92) v3.5.1cucmeB143
CsaV3_2G012820MELO3C022989.2Melon (DHL92) v3.6.1cucmedB136
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G012820Cucumber (Chinese Long) v3cuccucB067
CsaV3_2G012820Cucumber (Chinese Long) v3cuccucB073
CsaV3_2G012820Silver-seed gourdcarcucB0258
CsaV3_2G012820Silver-seed gourdcarcucB0265
CsaV3_2G012820Silver-seed gourdcarcucB0786
CsaV3_2G012820Silver-seed gourdcarcucB0814
CsaV3_2G012820Silver-seed gourdcarcucB1001
CsaV3_2G012820Silver-seed gourdcarcucB1123
CsaV3_2G012820Cucumber (Gy14) v2cgybcucB064
CsaV3_2G012820Cucumber (Gy14) v2cgybcucB109
CsaV3_2G012820Cucumber (Gy14) v1cgycucB384
CsaV3_2G012820Cucumber (Gy14) v1cgycucB581
CsaV3_2G012820Cucurbita maxima (Rimu)cmacucB0277
CsaV3_2G012820Cucurbita maxima (Rimu)cmacucB0418
CsaV3_2G012820Cucurbita maxima (Rimu)cmacucB0611
CsaV3_2G012820Cucurbita maxima (Rimu)cmacucB0698
CsaV3_2G012820Cucurbita moschata (Rifu)cmocucB0595
CsaV3_2G012820Cucurbita maxima (Rimu)cmacucB0964
CsaV3_2G012820Cucurbita maxima (Rimu)cmacucB1043
CsaV3_2G012820Cucurbita moschata (Rifu)cmocucB0267
CsaV3_2G012820Cucurbita moschata (Rifu)cmocucB0413
CsaV3_2G012820Cucurbita moschata (Rifu)cmocucB0683
CsaV3_2G012820Cucurbita moschata (Rifu)cmocucB0952
CsaV3_2G012820Cucurbita moschata (Rifu)cmocucB1026
CsaV3_2G012820Cucurbita pepo (Zucchini)cpecucB0145
CsaV3_2G012820Cucurbita pepo (Zucchini)cpecucB0295
CsaV3_2G012820Cucurbita pepo (Zucchini)cpecucB0377
CsaV3_2G012820Cucurbita pepo (Zucchini)cpecucB0746
CsaV3_2G012820Cucurbita pepo (Zucchini)cpecucB0889
CsaV3_2G012820Cucurbita pepo (Zucchini)cpecucB1045
CsaV3_2G012820Wild cucumber (PI 183967)cpicucB134
CsaV3_2G012820Wild cucumber (PI 183967)cpicucB138
CsaV3_2G012820Bottle gourd (USVL1VR-Ls)cuclsiB098
CsaV3_2G012820Bottle gourd (USVL1VR-Ls)cuclsiB139
CsaV3_2G012820Bottle gourd (USVL1VR-Ls)cuclsiB140
CsaV3_2G012820Melon (DHL92) v3.5.1cucmeB147
CsaV3_2G012820Melon (DHL92) v3.6.1cucmedB140
CsaV3_2G012820Watermelon (Charleston Gray)cucwcgB148
CsaV3_2G012820Watermelon (Charleston Gray)cucwcgB161
CsaV3_2G012820Watermelon (Charleston Gray)cucwcgB168
CsaV3_2G012820Watermelon (97103) v1cucwmB130
CsaV3_2G012820Watermelon (97103) v1cucwmB136
CsaV3_2G012820Watermelon (97103) v1cucwmB184
CsaV3_2G012820Watermelon (97103) v2cucwmbB155
CsaV3_2G012820Watermelon (97103) v2cucwmbB134
CsaV3_2G012820Watermelon (97103) v2cucwmbB148
CsaV3_2G012820Wax gourdcucwgoB129
CsaV3_2G012820Wax gourdcucwgoB150
CsaV3_2G012820Wax gourdcucwgoB155