CsaV3_2G012060 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G012060
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 9510208 .. 9510477 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATCCCGTTGCTTATGCGTGAAGCCATTTAAAAACCAAAAATAAATAATAACGAAAATGGAATGAGTGTGGGGCCGCCTTGAAGTAACCGAGCCAATGAAAACGGAGAGATTGAAAAGGGTTGGCACATAGGGACCCAGAGAAATCAAAAGGTCGGAGAGAAGGTAGGGGATGATGATGTTTGTGTGGAGCTTTTAGTAGAGGATGATGAGGGTAAAATTGTAAATGAAGGTGTGGTTAAATGGGATTTTATAAGGGAGGCGTGA

mRNA sequence

ATGGATATCCCTAACCGAGCCAATGAAAACGGAGAGATTGAAAAGGGTTGGCACATAGGGACCCAGAGAAATCAAAAGGTCGGAGAGAAGGTAGGGGATGATGATGTTTGTGTGGAGCTTTTAGTAGAGGATGATGAGGGTAAAATTGTAAATGAAGGTGTGGTTAAATGGGATTTTATAAGGGAGGCGTGA

Coding sequence (CDS)

ATGGATATCCCTAACCGAGCCAATGAAAACGGAGAGATTGAAAAGGGTTGGCACATAGGGACCCAGAGAAATCAAAAGGTCGGAGAGAAGGTAGGGGATGATGATGTTTGTGTGGAGCTTTTAGTAGAGGATGATGAGGGTAAAATTGTAAATGAAGGTGTGGTTAAATGGGATTTTATAAGGGAGGCGTGA

Protein sequence

MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFIREA
Homology
[Close]
BLAST of CsaV3_2G012060 vs. NCBI nr
Match: KGN61526.1 (hypothetical protein Csa_2G160600 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 1.0e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFI 60
          MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFI
Sbjct: 1  MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFI 60

Query: 61 REA 64
          REA
Sbjct: 61 REA 63

[Close]
BLAST of CsaV3_2G012060 vs. TrEMBL
Match: tr|A0A0A0LNJ2|A0A0A0LNJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G160600 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.8e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFI 60
          MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFI
Sbjct: 1  MDIPNRANENGEIEKGWHIGTQRNQKVGEKVGDDDVCVELLVEDDEGKIVNEGVVKWDFI 60

Query: 61 REA 64
          REA
Sbjct: 61 REA 63

The following BLAST results are available for this feature:
BLAST of CsaV3_2G012060 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61526.11.0e-28100.00hypothetical protein Csa_2G160600 [Cucumis sativus][more]
BLAST of CsaV3_2G012060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G012060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G012060 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNJ2|A0A0A0LNJ2_CUCSA6.8e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G160600 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G012060.1CsaV3_2G012060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G012060CsGy2G009790Cucumber (Gy14) v2cgybcucB064
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G012060Cucumber (Chinese Long) v3cuccucB077
CsaV3_2G012060Cucumber (Chinese Long) v3cuccucB067
CsaV3_2G012060Silver-seed gourdcarcucB0265
CsaV3_2G012060Silver-seed gourdcarcucB1001
CsaV3_2G012060Silver-seed gourdcarcucB1123
CsaV3_2G012060Cucumber (Gy14) v2cgybcucB109
CsaV3_2G012060Cucumber (Gy14) v2cgybcucB116
CsaV3_2G012060Cucumber (Gy14) v1cgycucB309
CsaV3_2G012060Cucumber (Gy14) v1cgycucB384
CsaV3_2G012060Cucurbita maxima (Rimu)cmacucB0277
CsaV3_2G012060Cucurbita maxima (Rimu)cmacucB0698
CsaV3_2G012060Cucurbita maxima (Rimu)cmacucB0964
CsaV3_2G012060Cucurbita maxima (Rimu)cmacucB1043
CsaV3_2G012060Cucurbita moschata (Rifu)cmocucB0267
CsaV3_2G012060Cucurbita moschata (Rifu)cmocucB0683
CsaV3_2G012060Cucurbita moschata (Rifu)cmocucB0952
CsaV3_2G012060Cucurbita moschata (Rifu)cmocucB1026
CsaV3_2G012060Cucurbita pepo (Zucchini)cpecucB0377
CsaV3_2G012060Cucurbita pepo (Zucchini)cpecucB0746
CsaV3_2G012060Cucurbita pepo (Zucchini)cpecucB0889
CsaV3_2G012060Cucurbita pepo (Zucchini)cpecucB1045
CsaV3_2G012060Wild cucumber (PI 183967)cpicucB080
CsaV3_2G012060Wild cucumber (PI 183967)cpicucB134
CsaV3_2G012060Wild cucumber (PI 183967)cpicucB143
CsaV3_2G012060Bottle gourd (USVL1VR-Ls)cuclsiB139
CsaV3_2G012060Melon (DHL92) v3.5.1cucmeB143
CsaV3_2G012060Melon (DHL92) v3.5.1cucmeB147
CsaV3_2G012060Melon (DHL92) v3.6.1cucmedB136
CsaV3_2G012060Melon (DHL92) v3.6.1cucmedB140
CsaV3_2G012060Watermelon (Charleston Gray)cucwcgB148
CsaV3_2G012060Watermelon (Charleston Gray)cucwcgB161
CsaV3_2G012060Watermelon (Charleston Gray)cucwcgB168
CsaV3_2G012060Watermelon (97103) v1cucwmB136
CsaV3_2G012060Watermelon (97103) v1cucwmB184
CsaV3_2G012060Watermelon (97103) v2cucwmbB155
CsaV3_2G012060Watermelon (97103) v2cucwmbB134
CsaV3_2G012060Watermelon (97103) v2cucwmbB148
CsaV3_2G012060Wax gourdcucwgoB129