CsaV3_2G011440 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G011440
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 8740712 .. 8741086 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTCAAGAAAAGCAAGAGACAAACTGTGGCTAATCGACAAGCAGCAGCGTACACGAAGATCAACTTCCGACGGCCAAGAGTGGTGGACAATTTTTAGTCGACATACAGTGGCTAATCGAAAAAGGGATGAAGTACCACGTAGATCGGCAAGCAACTTTGATCACCTACGACGAGAGCTAGTGGTAATGCGTTTGGCTGGTCAGCACTCAGTCACAGTAGTCATCGACGTTGGCAGTAGAAAGATAGAGAGATATTGCAACGTAAGGAGAGGGCATCAGAGAGATTTCGAGAAGAGGGGGATGCTAGGCTTCCACGAAGAAGACTTCTCCAATTCCCTCTCTTTTTTTCTTCTTTTCATTAATTTAAAATAA

mRNA sequence

ATGCATTCAAGAAAAGCAAGAGACAAACTGTGGCTAATCGACAAGCAGCAGCGTACACGAAGATCAACTTCCGACGGCCAAGAGTGGTGGACAATTTTTAGTCGACATACAGTGGCTAATCGAAAAAGGGATGAAGTACCACGTAGATCGGCAAGCAACTTTGATCACCTACGACGAGAGCTAGTGGTAATGCGTTTGGCTGGTCAGCACTCAGTCACAGTAGTCATCGACGTTGGCAGTAGAAAGATAGAGAGATATTGCAACGTAAGGAGAGGGCATCAGAGAGATTTCGAGAAGAGGGGGATGCTAGGCTTCCACGAAGAAGACTTCTCCAATTCCCTCTCTTTTTTTCTTCTTTTCATTAATTTAAAATAA

Coding sequence (CDS)

ATGCATTCAAGAAAAGCAAGAGACAAACTGTGGCTAATCGACAAGCAGCAGCGTACACGAAGATCAACTTCCGACGGCCAAGAGTGGTGGACAATTTTTAGTCGACATACAGTGGCTAATCGAAAAAGGGATGAAGTACCACGTAGATCGGCAAGCAACTTTGATCACCTACGACGAGAGCTAGTGGTAATGCGTTTGGCTGGTCAGCACTCAGTCACAGTAGTCATCGACGTTGGCAGTAGAAAGATAGAGAGATATTGCAACGTAAGGAGAGGGCATCAGAGAGATTTCGAGAAGAGGGGGATGCTAGGCTTCCACGAAGAAGACTTCTCCAATTCCCTCTCTTTTTTTCTTCTTTTCATTAATTTAAAATAA

Protein sequence

MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRELVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLFINLK
Homology
[Close]
BLAST of CsaV3_2G011440 vs. NCBI nr
Match: KGN61462.1 (hypothetical protein Csa_2G136680 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 8.6e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRE 60
           MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRE
Sbjct: 1   MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRE 60

Query: 61  LVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLF 120
           LVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLF
Sbjct: 61  LVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLF 120

Query: 121 INLK 125
           INLK
Sbjct: 121 INLK 124

[Close]
BLAST of CsaV3_2G011440 vs. TrEMBL
Match: tr|A0A0A0LL48|A0A0A0LL48_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G136680 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 5.7e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRE 60
           MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRE
Sbjct: 1   MHSRKARDKLWLIDKQQRTRRSTSDGQEWWTIFSRHTVANRKRDEVPRRSASNFDHLRRE 60

Query: 61  LVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLF 120
           LVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLF
Sbjct: 61  LVVMRLAGQHSVTVVIDVGSRKIERYCNVRRGHQRDFEKRGMLGFHEEDFSNSLSFFLLF 120

Query: 121 INLK 125
           INLK
Sbjct: 121 INLK 124

The following BLAST results are available for this feature:
BLAST of CsaV3_2G011440 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61462.18.6e-64100.00hypothetical protein Csa_2G136680 [Cucumis sativus][more]
BLAST of CsaV3_2G011440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G011440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G011440 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LL48|A0A0A0LL48_CUCSA5.7e-64100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G136680 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G011440.1CsaV3_2G011440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G011440Cucumber (Gy14) v2cgybcucB064
CsaV3_2G011440Cucumber (Gy14) v1cgycucB383
CsaV3_2G011440Cucumber (Gy14) v1cgycucB408
CsaV3_2G011440Cucurbita maxima (Rimu)cmacucB0276
CsaV3_2G011440Cucurbita maxima (Rimu)cmacucB0424
CsaV3_2G011440Cucurbita maxima (Rimu)cmacucB1047
CsaV3_2G011440Cucurbita moschata (Rifu)cmocucB0266
CsaV3_2G011440Cucurbita moschata (Rifu)cmocucB0417
CsaV3_2G011440Cucurbita moschata (Rifu)cmocucB1031
CsaV3_2G011440Cucurbita pepo (Zucchini)cpecucB0151
CsaV3_2G011440Cucurbita pepo (Zucchini)cpecucB0375
CsaV3_2G011440Wild cucumber (PI 183967)cpicucB080
CsaV3_2G011440Bottle gourd (USVL1VR-Ls)cuclsiB101
CsaV3_2G011440Melon (DHL92) v3.5.1cucmeB136
CsaV3_2G011440Melon (DHL92) v3.5.1cucmeB149
CsaV3_2G011440Melon (DHL92) v3.6.1cucmedB129
CsaV3_2G011440Melon (DHL92) v3.6.1cucmedB142
CsaV3_2G011440Watermelon (Charleston Gray)cucwcgB154
CsaV3_2G011440Watermelon (Charleston Gray)cucwcgB155
CsaV3_2G011440Watermelon (97103) v1cucwmB143
CsaV3_2G011440Watermelon (97103) v1cucwmB179
CsaV3_2G011440Watermelon (97103) v2cucwmbB142
CsaV3_2G011440Wax gourdcucwgoB133
CsaV3_2G011440Silver-seed gourdcarcucB0257
CsaV3_2G011440Silver-seed gourdcarcucB1122