CsaV3_2G011230 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G011230
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 8461819 .. 8462160 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTGAAGAGAAACATTCCTCAAAGATTAGCAAGCCCAATTGGAAGGATAGATGTAAACCCCACGAAGGTTAGAGTCTCATTTGTGCTGAAATGCAATCAAGAAGAGAAAAGGAAGAGAAAAGGGTCACTCAGTGGCTTAGAATGTAAGGGGCTGAAGTTGACTAAGGCATTGACCTTGAAGTTCGAGAAGGGAAAGAATTGTGTGATTCTCCTTGGGGATCCTTCACAGACTAAGAAAGAAATTTCTCTCGAAAGGTTATCAAAGCAGTGGCAGACCCATCACAAGGGTTTTCTTGTAGAAATGAGAGCCCTCATGCCATCAGCATTGACAAATTGA

mRNA sequence

ATGGGTCTGAAGAGAAACATTCCTCAAAGATTAGCAAGCCCAATTGGAAGGATAGATGTAAACCCCACGAAGGTTAGAGTCTCATTTGTGCTGAAATGCAATCAAGAAGAGAAAAGGAAGAGAAAAGGGTCACTCAGTGGCTTAGAATGTAAGGGGCTGAAGTTGACTAAGGCATTGACCTTGAAGTTCGAGAAGGGAAAGAATTGTGTGATTCTCCTTGGGGATCCTTCACAGACTAAGAAAGAAATTTCTCTCGAAAGGTTATCAAAGCAGTGGCAGACCCATCACAAGGGTTTTCTTGTAGAAATGAGAGCCCTCATGCCATCAGCATTGACAAATTGA

Coding sequence (CDS)

ATGGGTCTGAAGAGAAACATTCCTCAAAGATTAGCAAGCCCAATTGGAAGGATAGATGTAAACCCCACGAAGGTTAGAGTCTCATTTGTGCTGAAATGCAATCAAGAAGAGAAAAGGAAGAGAAAAGGGTCACTCAGTGGCTTAGAATGTAAGGGGCTGAAGTTGACTAAGGCATTGACCTTGAAGTTCGAGAAGGGAAAGAATTGTGTGATTCTCCTTGGGGATCCTTCACAGACTAAGAAAGAAATTTCTCTCGAAAGGTTATCAAAGCAGTGGCAGACCCATCACAAGGGTTTTCTTGTAGAAATGAGAGCCCTCATGCCATCAGCATTGACAAATTGA

Protein sequence

MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRALMPSALTN

Homology

[Close]

BLAST of CsaV3_2G011230 vs. NCBI nr
Match: KGN61441.1 (hypothetical protein Csa_2G122540 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 2.7e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALT 60
           MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALT
Sbjct: 1   MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALT 60

Query: 61  LKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRALMPSALTN 114
           LKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRALMPSALTN
Sbjct: 61  LKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRALMPSALTN 113

[Close]

BLAST of CsaV3_2G011230 vs. NCBI nr
Match: XP_022154744.1 (uncharacterized protein LOC111021922 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 9.8e-06
Identity = 24/49 (48.98%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 57  KALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRA 106
           +ALT+ F  G N +IL GDP+  + E++L++L++ W+TH +GFLVE+RA
Sbjct: 470 QALTMSFRNGSNRIILKGDPTLMRMEVTLKKLARTWETHDQGFLVELRA 518

[Close]

BLAST of CsaV3_2G011230 vs. TrEMBL
Match: tr|A0A0A0LN98|A0A0A0LN98_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G122540 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.8e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALT 60
           MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALT
Sbjct: 1   MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALT 60

Query: 61  LKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRALMPSALTN 114
           LKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRALMPSALTN
Sbjct: 61  LKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRALMPSALTN 113

The following BLAST results are available for this feature:

BLAST of CsaV3_2G011230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61441.1	2.7e-56	100.00	hypothetical protein Csa_2G122540 [Cucumis sativus]	[more]
XP_022154744.1	9.8e-06	48.98	uncharacterized protein LOC111021922 [Momordica charantia]	[more]

BLAST of CsaV3_2G011230 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G011230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G011230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LN98\|A0A0A0LN98_CUCSA	1.8e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G122540 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G011230.1	CsaV3_2G011230.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G011230	Silver-seed gourd	carcucB0775
CsaV3_2G011230	Silver-seed gourd	carcucB0894
CsaV3_2G011230	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G011230	Cucumber (Gy14) v1	cgycucB408
CsaV3_2G011230	Cucurbita maxima (Rimu)	cmacucB0329
CsaV3_2G011230	Cucurbita moschata (Rifu)	cmocucB0324
CsaV3_2G011230	Cucurbita moschata (Rifu)	cmocucB0414
CsaV3_2G011230	Cucurbita pepo (Zucchini)	cpecucB0146
CsaV3_2G011230	Cucurbita pepo (Zucchini)	cpecucB0194
CsaV3_2G011230	Cucurbita pepo (Zucchini)	cpecucB1046
CsaV3_2G011230	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G011230	Bottle gourd (USVL1VR-Ls)	cuclsiB103
CsaV3_2G011230	Melon (DHL92) v3.5.1	cucmeB135
CsaV3_2G011230	Melon (DHL92) v3.6.1	cucmedB128
CsaV3_2G011230	Watermelon (Charleston Gray)	cucwcgB159
CsaV3_2G011230	Watermelon (97103) v1	cucwmB189
CsaV3_2G011230	Watermelon (97103) v2	cucwmbB146
CsaV3_2G011230	Wax gourd	cucwgoB132