CsaV3_2G011010 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G011010
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 8255267 .. 8255696 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTGAAAGATGGTTATTTAAAGGAGAACTCGGATGCATAACAAAAGCGTCAAGAGAACCCCCCATTCTTGACGTCATTCGTCCTACGTCGGTGATAAATCTCCAATATACTGATGCATTACTAATGGCACAGGGAATTCGAATCCAATTTCCCTACGCCATGCAAGACACTTTGGAGGAAAGTAAATATATATTTCATTCTTTCACCTGTCCCGACGACGTCATCAGGACAGCGTCAGAAATGCAAATCTCGTTTCTCGACGCCATGCATGGCATGTTGGAGGAAAGTAAATATATATTTAATTCTTTCACCTGTCCGGACGCGGTAGTGGTTAACATCGACAGTGGTGAAGGCATTCCCAACGTTTATGTTGGCCACGTCGAGGATAGGCCACATTTGGCGGACGTAAAAAAGGCGCCGTTGGGATAA

mRNA sequence

ACTGAAAGATGGTTATTTAAAGGAGAACTCGGATGCATAACAAAAGCGTCAAGAGAACCCCCCATTCTTGACGTCATTCGTCCTACGTCGGTGATAAATCTCCAATATACTGATGCATTACTAATGGCACAGGGAATTCGAATCCAATTTCCCTACGCCATGCAAGACACTTTGGAGGAAAGTAAATATATATTTCATTCTTTCACCTGTCCCGACGACGTCATCAGGACAGCGTCAGAAATGCAAATCTCGTTTCTCGACGCCATGCATGGCATGTTGGAGGAAAGTAAATATATATTTAATTCTTTCACCTGTCCGGACGCGGTAGTGGTTAACATCGACAGTGGTGAAGGCATTCCCAACGTTTATGTTGGCCACGTCGAGGATAGGCCACATTTGGCGGACGTAAAAAAGGCGCCGTTGGGATAA

Coding sequence (CDS)

ACTGAAAGATGGTTATTTAAAGGAGAACTCGGATGCATAACAAAAGCGTCAAGAGAACCCCCCATTCTTGACGTCATTCGTCCTACGTCGGTGATAAATCTCCAATATACTGATGCATTACTAATGGCACAGGGAATTCGAATCCAATTTCCCTACGCCATGCAAGACACTTTGGAGGAAAGTAAATATATATTTCATTCTTTCACCTGTCCCGACGACGTCATCAGGACAGCGTCAGAAATGCAAATCTCGTTTCTCGACGCCATGCATGGCATGTTGGAGGAAAGTAAATATATATTTAATTCTTTCACCTGTCCGGACGCGGTAGTGGTTAACATCGACAGTGGTGAAGGCATTCCCAACGTTTATGTTGGCCACGTCGAGGATAGGCCACATTTGGCGGACGTAAAAAAGGCGCCGTTGGGATAA

Protein sequence

TERWLFKGELGCITKASREPPILDVIRPTSVINLQYTDALLMAQGIRIQFPYAMQDTLEESKYIFHSFTCPDDVIRTASEMQISFLDAMHGMLEESKYIFNSFTCPDAVVVNIDSGEGIPNVYVGHVEDRPHLADVKKAPLG
Homology
[Close]
BLAST of CsaV3_2G011010 vs. NCBI nr
Match: KGN61416.1 (hypothetical protein Csa_2G119380 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-12
Identity = 47/95 (49.47%), Postives = 50/95 (52.63%), Query Frame = 0 

Query: 46  IRIQFPYAMQDTLEESKYIFHSFTCPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 105
           ++I F  AM   LEESKYIF+SFTCPD                                 
Sbjct: 1   MQISFLDAMHGMLEESKYIFNSFTCPD--------------------------------- 60

Query: 106 XXXXXXNIDSGEGIPNVYVGHVEDRPHLADVKKAP 141
                 NIDSGEGIPNVYVGHVEDRPHLADVKKAP
Sbjct: 61  --AVVVNIDSGEGIPNVYVGHVEDRPHLADVKKAP 60

[Close]
BLAST of CsaV3_2G011010 vs. TrEMBL
Match: tr|A0A0A0LN71|A0A0A0LN71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G119380 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 47/95 (49.47%), Postives = 50/95 (52.63%), Query Frame = 0 

Query: 46  IRIQFPYAMQDTLEESKYIFHSFTCPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 105
           ++I F  AM   LEESKYIF+SFTCPD                                 
Sbjct: 1   MQISFLDAMHGMLEESKYIFNSFTCPD--------------------------------- 60

Query: 106 XXXXXXNIDSGEGIPNVYVGHVEDRPHLADVKKAP 141
                 NIDSGEGIPNVYVGHVEDRPHLADVKKAP
Sbjct: 61  --AVVVNIDSGEGIPNVYVGHVEDRPHLADVKKAP 60

The following BLAST results are available for this feature:
BLAST of CsaV3_2G011010 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61416.11.8e-1249.47hypothetical protein Csa_2G119380 [Cucumis sativus][more]
BLAST of CsaV3_2G011010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G011010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G011010 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LN71|A0A0A0LN71_CUCSA1.2e-1249.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G119380 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G011010.1CsaV3_2G011010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G011010Silver-seed gourdcarcucB0259
CsaV3_2G011010Silver-seed gourdcarcucB1121
CsaV3_2G011010Cucumber (Gy14) v2cgybcucB064
CsaV3_2G011010Cucumber (Gy14) v1cgycucB408
CsaV3_2G011010Cucurbita maxima (Rimu)cmacucB0419
CsaV3_2G011010Cucurbita maxima (Rimu)cmacucB1046
CsaV3_2G011010Cucurbita moschata (Rifu)cmocucB0414
CsaV3_2G011010Cucurbita moschata (Rifu)cmocucB1030
CsaV3_2G011010Cucurbita pepo (Zucchini)cpecucB0146
CsaV3_2G011010Cucurbita pepo (Zucchini)cpecucB0374
CsaV3_2G011010Cucurbita pepo (Zucchini)cpecucB1046
CsaV3_2G011010Wild cucumber (PI 183967)cpicucB080
CsaV3_2G011010Bottle gourd (USVL1VR-Ls)cuclsiB099
CsaV3_2G011010Melon (DHL92) v3.5.1cucmeB135
CsaV3_2G011010Melon (DHL92) v3.6.1cucmedB128
CsaV3_2G011010Watermelon (Charleston Gray)cucwcgB162
CsaV3_2G011010Watermelon (97103) v1cucwmB185
CsaV3_2G011010Watermelon (97103) v2cucwmbB149
CsaV3_2G011010Wax gourdcucwgoB130