CsaV3_2G010890 (gene) Cucumber (Chinese Long) v3

NameCsaV3_2G010890
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTransmembrane protein, putative
Locationchr2 : 8132794 .. 8133228 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGACGCGAACACACTAGCAGCCGACTGCATTGTCATATGCTGCTGCTGTCAATGCCTGGCGTTGCAGATCATTCTCCTTTTGTTCCTCAAGCTTCCATGGAAACTCGTTCGAAAGACAAGAGAGTTTGCAAAGAAAAGGCTGAGACTGAGAGAAAAAGAGGAGAAGATGGTAGGGAAAGAAAAGGGTTGTGGGAATGAGGTTAGAGGAATTAGTAATGGAAGTTGTATGAGAAATGAAGAAAAGGGATTGGGTTTGAGTTGTTGTATGGAAGAGATTGAGAAGGTTATGCAGGATTTGCATGAGAAAGGAGAGTTTGGTTTTGGAAGCTTTTGGGGAAATGGTAATACAAGTTCAGGTTCCTGCAGAGATGATCTGTTTAGTCCTACAAATGTACAGTATCAATTAATTCAAGTAATTCCTTCCACATGA

mRNA sequence

ATGGAAGACGCGAACACACTAGCAGCCGACTGCATTGTCATATGCTGCTGCTGTCAATGCCTGGCGTTGCAGATCATTCTCCTTTTGTTCCTCAAGCTTCCATGGAAACTCGTTCGAAAGACAAGAGAGTTTGCAAAGAAAAGGCTGAGACTGAGAGAAAAAGAGGAGAAGATGGTAGGGAAAGAAAAGGGTTGTGGGAATGAGGTTAGAGGAATTAGTAATGGAAGTTGTATGAGAAATGAAGAAAAGGGATTGGGTTTGAGTTGTTGTATGGAAGAGATTGAGAAGGTTATGCAGGATTTGCATGAGAAAGGAGAGTTTGGTTTTGGAAGCTTTTGGGGAAATGGTAATACAAGTTCAGGTTCCTGCAGAGATGATCTGTTTAGTCCTACAAATGTACAGTATCAATTAATTCAAGTAATTCCTTCCACATGA

Coding sequence (CDS)

ATGGAAGACGCGAACACACTAGCAGCCGACTGCATTGTCATATGCTGCTGCTGTCAATGCCTGGCGTTGCAGATCATTCTCCTTTTGTTCCTCAAGCTTCCATGGAAACTCGTTCGAAAGACAAGAGAGTTTGCAAAGAAAAGGCTGAGACTGAGAGAAAAAGAGGAGAAGATGGTAGGGAAAGAAAAGGGTTGTGGGAATGAGGTTAGAGGAATTAGTAATGGAAGTTGTATGAGAAATGAAGAAAAGGGATTGGGTTTGAGTTGTTGTATGGAAGAGATTGAGAAGGTTATGCAGGATTTGCATGAGAAAGGAGAGTTTGGTTTTGGAAGCTTTTGGGGAAATGGTAATACAAGTTCAGGTTCCTGCAGAGATGATCTGTTTAGTCCTACAAATGTACAGTATCAATTAATTCAAGTAATTCCTTCCACATGA

Protein sequence

MEDANTLAADCIVICCCCQCLALQIILLLFLKLPWKLVRKTREFAKKRLRLREKEEKMVGKEKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTSSGSCRDDLFSPTNVQYQLIQVIPST
BLAST of CsaV3_2G010890 vs. NCBI nr
Match: XP_011649060.1 (PREDICTED: uncharacterized protein LOC105434576 [Cucumis sativus] >KGN61402.1 hypothetical protein Csa_2G116260 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 2.9e-63
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG 60
           MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG
Sbjct: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG 60

Query: 61  KEKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTSS 120
           KEKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTSS
Sbjct: 61  KEKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTSS 120

Query: 121 GSCRDDLFSPTNVQYQLIQVIPST 145
           GSCRDDLFSPTNVQYQLIQVIPST
Sbjct: 121 GSCRDDLFSPTNVQYQLIQVIPST 144

BLAST of CsaV3_2G010890 vs. NCBI nr
Match: XP_022928895.1 (uncharacterized protein LOC111435666 [Cucurbita moschata])

HSP 1 Score: 183.3 bits (464), Expect = 5.7e-43
Identity = 119/146 (81.51%), Postives = 129/146 (88.36%), Query Frame = 0

Query: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG 60
           MED NTLAADCIVXXXXXXXXXXXXXXXXXXX   KLVRKTR+FAK+RLR+REKEEKMV 
Sbjct: 1   MEDMNTLAADCIVXXXXXXXXXXXXXXXXXXXXXCKLVRKTRDFAKRRLRMREKEEKMVM 60

Query: 61  KEKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWG-NGNTS 120
           ++     EVRGISNGSCMR+EE GLGLSCCMEEIE+VMQDLHEKGEFGFGSFWG  GN+ 
Sbjct: 61  ED-----EVRGISNGSCMRSEEDGLGLSCCMEEIERVMQDLHEKGEFGFGSFWGRKGNSV 120

Query: 121 SGSCRD-DLFSPTNVQYQLIQVIPST 145
           SGSCRD + F PT+VQYQLIQVIPST
Sbjct: 121 SGSCRDEEPFDPTDVQYQLIQVIPST 141

BLAST of CsaV3_2G010890 vs. NCBI nr
Match: XP_023551308.1 (uncharacterized protein LOC111809163 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.6 bits (449), Expect = 3.1e-41
Identity = 118/146 (80.82%), Postives = 129/146 (88.36%), Query Frame = 0

Query: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG 60
           MED NTLAADCIVXXXXXXXXXXXXXXXXXXX   KLVRKTR+FAK+RLR+REKEEKMV 
Sbjct: 1   MEDMNTLAADCIVXXXXXXXXXXXXXXXXXXXXXCKLVRKTRDFAKRRLRMREKEEKMVM 60

Query: 61  KEKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWG-NGNTS 120
           ++     EVRGISNGSCMR+EE GLGLSCCMEEIE+VMQDLHEKGEFGFGSFWG  GN+ 
Sbjct: 61  ED-----EVRGISNGSCMRSEEDGLGLSCCMEEIERVMQDLHEKGEFGFGSFWGRKGNSV 120

Query: 121 SGSCRD-DLFSPTNVQYQLIQVIPST 145
           SGSCRD + F+PT+VQYQLIQV PST
Sbjct: 121 SGSCRDEEPFNPTHVQYQLIQV-PST 140

BLAST of CsaV3_2G010890 vs. NCBI nr
Match: XP_008457185.1 (PREDICTED: uncharacterized protein LOC103496924 [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 4.1e-41
Identity = 115/145 (79.31%), Postives = 118/145 (81.38%), Query Frame = 0

Query: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG 60
           MED NTLAADCI XXXXXXXXXXXXXXXXXXX P KLVRKTREFAKKRL +REKEEKMVG
Sbjct: 1   MEDTNTLAADCIXXXXXXXXXXXXXXXXXXXXXPCKLVRKTREFAKKRLGMREKEEKMVG 60

Query: 61  KEKG-CGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTS 120
           KEKG CGNE+RGISNGS                    VMQDLHEKGEFGFGSFWGNGNT 
Sbjct: 61  KEKGCCGNELRGISNGSXXXXXXXXXXXXXXXXXXXXVMQDLHEKGEFGFGSFWGNGNTR 120

Query: 121 SGSCRDDLFSPTNVQYQLIQVIPST 145
           SGSCRD+LFSPTNVQYQLIQVIPST
Sbjct: 121 SGSCRDELFSPTNVQYQLIQVIPST 145

BLAST of CsaV3_2G010890 vs. NCBI nr
Match: XP_022969822.1 (uncharacterized protein LOC111468906 [Cucurbita maxima])

HSP 1 Score: 173.7 bits (439), Expect = 4.5e-40
Identity = 116/146 (79.45%), Postives = 127/146 (86.99%), Query Frame = 0

Query: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG 60
           MED NTLAADCIVXXXXXXXXXXXXXXXXXXX   KLVRKTR+FAK+RLR+REKEEKMV 
Sbjct: 1   MEDMNTLAADCIVXXXXXXXXXXXXXXXXXXXXXXKLVRKTRDFAKRRLRMREKEEKMVM 60

Query: 61  KEKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWG-NGNTS 120
           ++     EVRG SNG CMR+EE GLGLSCCMEEIE+VMQDLHEKGEFGFGSFWG  GN+ 
Sbjct: 61  ED-----EVRGSSNGRCMRSEEDGLGLSCCMEEIERVMQDLHEKGEFGFGSFWGRKGNSV 120

Query: 121 SGSCRD-DLFSPTNVQYQLIQVIPST 145
           SGSCRD + F+PT+VQYQLIQV PST
Sbjct: 121 SGSCRDEEPFNPTHVQYQLIQV-PST 140

BLAST of CsaV3_2G010890 vs. TAIR10
Match: AT3G25597.1 (unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-08
Identity = 44/146 (30.14%), Postives = 69/146 (47.26%), Query Frame = 0

Query: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTRE-FAKKRLRLREKEEKMV 60
           MED N  AADC+V                   LP KLV+ TR+ + K  +  R K   + 
Sbjct: 1   MEDLNAFAADCVVVSCCCNCLVLQIAIFIFLGLPQKLVKNTRKCYTKWGINRRIKRMGLC 60

Query: 61  GK-EKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWG---- 120
            +  +    +         M  E +G G   C+EE+E+V+++  + GEF FGSFWG    
Sbjct: 61  FECRENTEVDSEWRKESMMMSMEMEGFG---CIEEVEQVLEEFSKNGEFLFGSFWGQERV 120

Query: 121 NGNTSSGSCRDDLFSPTNV-QYQLIQ 140
             ++S  +C +D F    V +Y++I+
Sbjct: 121 QNSSSMSNCGNDNFDLRFVSRYEIIE 143

BLAST of CsaV3_2G010890 vs. TAIR10
Match: AT1G68700.1 (unknown protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.5e-05
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 81  EEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTSSGSCRDDLFSPTNVQYQL 138
           EE G  +S CME++E+++Q+L  KGEF FGSFW  G++++       F   N QY++
Sbjct: 30  EEHGSEVS-CMEDVEEMLQELSMKGEFVFGSFWRQGDSAAND-----FDFGNSQYEI 80

BLAST of CsaV3_2G010890 vs. TrEMBL
Match: tr|A0A0A0LKX5|A0A0A0LKX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G116260 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.9e-63
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG 60
           MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG
Sbjct: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG 60

Query: 61  KEKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTSS 120
           KEKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTSS
Sbjct: 61  KEKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTSS 120

Query: 121 GSCRDDLFSPTNVQYQLIQVIPST 145
           GSCRDDLFSPTNVQYQLIQVIPST
Sbjct: 121 GSCRDDLFSPTNVQYQLIQVIPST 144

BLAST of CsaV3_2G010890 vs. TrEMBL
Match: tr|A0A1S3C4I0|A0A1S3C4I0_CUCME (uncharacterized protein LOC103496924 OS=Cucumis melo OX=3656 GN=LOC103496924 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.7e-41
Identity = 115/145 (79.31%), Postives = 118/145 (81.38%), Query Frame = 0

Query: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG 60
           MED NTLAADCI XXXXXXXXXXXXXXXXXXX P KLVRKTREFAKKRL +REKEEKMVG
Sbjct: 1   MEDTNTLAADCIXXXXXXXXXXXXXXXXXXXXXPCKLVRKTREFAKKRLGMREKEEKMVG 60

Query: 61  KEKG-CGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTS 120
           KEKG CGNE+RGISNGS                    VMQDLHEKGEFGFGSFWGNGNT 
Sbjct: 61  KEKGCCGNELRGISNGSXXXXXXXXXXXXXXXXXXXXVMQDLHEKGEFGFGSFWGNGNTR 120

Query: 121 SGSCRDDLFSPTNVQYQLIQVIPST 145
           SGSCRD+LFSPTNVQYQLIQVIPST
Sbjct: 121 SGSCRDELFSPTNVQYQLIQVIPST 145

BLAST of CsaV3_2G010890 vs. TrEMBL
Match: tr|A0A2P6R221|A0A2P6R221_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0436431 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 57/149 (38.26%), Postives = 82/149 (55.03%), Query Frame = 0

Query: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG 60
           MED N LAADC+V                   LP KL+RKTRE+  K+L+ R ++  +V 
Sbjct: 1   MEDCNVLAADCVVISCCCQCLILQITIFIFFKLPCKLIRKTREYTMKKLQQRRRKGIVVE 60

Query: 61  KEK--GCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNT 120
            +    C N++  I     MR+ E       C+EE++KV+++L+++GEFGFGSFWG G  
Sbjct: 61  SKTVYQCENDIESIRES--MRSVEDIHSCRSCIEEVDKVLEELYQRGEFGFGSFWGGGEL 120

Query: 121 SSGSC----RDDLFSPTNVQYQLIQVIPS 144
                     DD F P+ V+YQLI++I S
Sbjct: 121 GFSPTHHLGEDDRFDPSFVRYQLIEMIES 147

BLAST of CsaV3_2G010890 vs. TrEMBL
Match: tr|A0A2I4G194|A0A2I4G194_9ROSI (uncharacterized protein LOC109003818 OS=Juglans regia OX=51240 GN=LOC109003818 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.6e-17
Identity = 62/156 (39.74%), Postives = 86/156 (55.13%), Query Frame = 0

Query: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG 60
           MED N LAADC+V                   LP+KL+RKTR++AKKRLR R+K++  + 
Sbjct: 25  MEDPNMLAADCVVISCCCQCLILQILIFVLLKLPYKLIRKTRDYAKKRLRQRKKDDDKIT 84

Query: 61  K---EKGCGNEVRGISNGSCMRNEEKGL------GLSCCMEEIEKVMQDLHEKGEFGFGS 120
           +   ++   ++     NG   R +  GL      G   CMEE+EKV+Q++ +KGEF FGS
Sbjct: 85  EREMDQYYDDDSLVGMNGESFRIQVDGLFRDGDHGCGSCMEEVEKVLQEMSQKGEFAFGS 144

Query: 121 FWGNGNTSSGSCRDDL----FSPTNVQYQLIQVIPS 144
           FWG    SSGS    +    F    VQYQ+I++I S
Sbjct: 145 FWGR-KGSSGSLSTCVAKHEFDDRTVQYQIIEMIES 179

BLAST of CsaV3_2G010890 vs. TrEMBL
Match: tr|A0A1S3UNW8|A0A1S3UNW8_VIGRR (uncharacterized protein LOC106767343 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767343 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.6e-17
Identity = 55/143 (38.46%), Postives = 76/143 (53.15%), Query Frame = 0

Query: 1   MEDANTLAADCIVXXXXXXXXXXXXXXXXXXXLPWKLVRKTREFAKKRLRLREKEEKMVG 60
           ME+ N L ADC+V                   LPWKL+RKTRE+AKK+LR R+  +  + 
Sbjct: 1   MEEWNMLGADCVVISCCCQCLLLQILVFLMLKLPWKLIRKTREYAKKKLRQRKGNDDKMK 60

Query: 61  KEKGCGNE--VRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNT 120
            E GC  +  VR    G     + +G     CM+E+EK+M++L++KGEFGFGSFWG    
Sbjct: 61  IESGCYEDVLVRIDHEGEMAVRDGEGFDCGGCMDEVEKMMEELYQKGEFGFGSFWGR--- 120

Query: 121 SSGSCRDDLFSPTNVQYQLIQVI 142
               C      P  V+YQ+I  +
Sbjct: 121 -EEPCGKHYNHPNLVRYQVIDFV 139

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011649060.12.9e-63100.00PREDICTED: uncharacterized protein LOC105434576 [Cucumis sativus] >KGN61402.1 hy... [more]
XP_022928895.15.7e-4381.51uncharacterized protein LOC111435666 [Cucurbita moschata][more]
XP_023551308.13.1e-4180.82uncharacterized protein LOC111809163 [Cucurbita pepo subsp. pepo][more]
XP_008457185.14.1e-4179.31PREDICTED: uncharacterized protein LOC103496924 [Cucumis melo][more]
XP_022969822.14.5e-4079.45uncharacterized protein LOC111468906 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT3G25597.14.3e-0830.14unknown protein[more]
AT1G68700.11.5e-0542.11unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LKX5|A0A0A0LKX5_CUCSA1.9e-63100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G116260 PE=4 SV=1[more]
tr|A0A1S3C4I0|A0A1S3C4I0_CUCME2.7e-4179.31uncharacterized protein LOC103496924 OS=Cucumis melo OX=3656 GN=LOC103496924 PE=... [more]
tr|A0A2P6R221|A0A2P6R221_ROSCH2.1e-1738.26Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0436431 PE=4... [more]
tr|A0A2I4G194|A0A2I4G194_9ROSI3.6e-1739.74uncharacterized protein LOC109003818 OS=Juglans regia OX=51240 GN=LOC109003818 P... [more]
tr|A0A1S3UNW8|A0A1S3UNW8_VIGRR3.6e-1738.46uncharacterized protein LOC106767343 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G010890.1CsaV3_2G010890.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33264FAMILY NOT NAMEDcoord: 1..124
NoneNo IPR availablePANTHERPTHR33264:SF7SUBFAMILY NOT NAMEDcoord: 1..124

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G010890Watermelon (Charleston Gray)cucwcgB162