CsaV3_2G010230 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G010230
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Polyprotein
Location	chr2 : 7016296 .. 7017663 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGCATTTTAGATCTTATAAACTCTGCTGTTTTAGACCAAGATGTGATGGGTGGCTTAAGATGGCCTTTGGAGAAAGCTTCCTCTGGCGATAGATTCAGATTGGATAGAGTGTGGCATACTGTTGCCAAGTCTTATGTAAGCCCAGTTGTGAGGCTCAAACTAAGAAATGTCGATCGATATGATTTTGGAACCTCGGTTGGTGAAGCCTCAAAAGAGGTTATTTTGAAGCTGAAACAAGTAACTTCAGAACTACTGGTAAGCATCCTCATTACTTATTTTGGGTTGGGTTGGGTTGGGTTGGACGGAAGAAAATTATAGACTCGTTGGTTGGGCTGGTTCATGGTGGAGAAATATACAATCCAAATAAAGGGTTGCGTATAGAAAGTGCTTGAATAACTCAACTTAACGCCCCTACTGACTGTGTTGGCATTTCTATTTTTCTTTCTAAGAAAGGTTTTAATTTGATTATTTGATAACGTTTACGTGGAAGTTGAAATGCTGCATGTTTAATTACTGTTTTCATCATGTCTGTTCATTTTTTATTGTAGAGAGAGGAAGCTCAATATGATGTTATCTCTGATACGCTTAATGACACCCTGAAGCTGATTTGGAACAACTTTGTATGTTATGCATCTTGTTCATCCCCTATTGTTTCAGTATGATGTAGTTTTTAGGCTCAGTGCAGTTACTTTGATGCAAGCTAAGGCCAAGATTTTCCTTCGCTGTGGTGTGTGAATACTGGGGTTTGGCTGCTTAGAATGGTCATCTCTATACCATATATGTAAGTTTTGTTGAGAAATATGTTTCTCCATTTTGTTAAGTATCTGACTTTTCAGAAAGTTAATTGAATATTAAAAGTTATCAATATGGGAAAATTTTCATTTTGATTCATCTAATTTAGCTTTTCGAGGTATAAAGGGCTGAATAAGTGGGGCATATTCAGACTTTTTTAATAGGGGCACAATAATGTTTTTGCTTCTATTGCATTACATCTAATTGTATCAAATTCTATTCTCGGATCTGTCCTTAACCCAGGAAAAAAATTAAAAGATAAGACCCACCAACACATCCAAGTTCCATAGCTTTGGGTTTGCTATCCTGATCATGATTTTTATAACCTGAAGGTAAAAGTCCTCCCGTTTTGGTTGGTTGTGGGCAAGGGATTCAAACCCTAGACACTGTGGTTAGTAGCCATGTGTTCTAATATTCCTATGAGATATACAAGTCCTACCTGGTCTTCACTAGATGTACTGTTTCAGGGGTTCCCATAATCATTCTCTCCAACCATTTGCCATTTTGAGTGAAGAAGACTTGAAAGCATCTCTCCCTATAAGAACAGTGTGTTCTAAGGTGTGAAGTGAG

mRNA sequence

ATGGAGGGCATTTTAGATCTTATAAACTCTGCTGTTTTAGACCAAGATGTGATGGGTGGCTTAAGATGGCCTTTGGAGAAAGCTTCCTCTGGCGATAGATTCAGATTGGATAGAGTGTGGCATACTGTTGCCAAGTCTTATGTAAGCCCAGTTGTGAGGCTCAAACTAAGAAATGTCGATCGATATGATTTTGGAACCTCGGTTGGTGAAGCCTCAAAAGAGGTTATTTTGAAGCTGAAACAAGTAACTTCAGAACTACTGGTAAGCATCCTCATTACTTATTTTGGGTTGGGTTGGGTTGGGTTGGACGGAAGAAAATTATAG

Coding sequence (CDS)

ATGGAGGGCATTTTAGATCTTATAAACTCTGCTGTTTTAGACCAAGATGTGATGGGTGGCTTAAGATGGCCTTTGGAGAAAGCTTCCTCTGGCGATAGATTCAGATTGGATAGAGTGTGGCATACTGTTGCCAAGTCTTATGTAAGCCCAGTTGTGAGGCTCAAACTAAGAAATGTCGATCGATATGATTTTGGAACCTCGGTTGGTGAAGCCTCAAAAGAGGTTATTTTGAAGCTGAAACAAGTAACTTCAGAACTACTGGTAAGCATCCTCATTACTTATTTTGGGTTGGGTTGGGTTGGGTTGGACGGAAGAAAATTATAG

Protein sequence

MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVDRYDFGTSVGEASKEVILKLKQVTSELLVSILITYFGLGWVGLDGRKL

Homology

[Close]

BLAST of CsaV3_2G010230 vs. NCBI nr
Match: XP_011650137.1 (PREDICTED: uncharacterized protein LOC105434728 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 5.2e-41
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD
Sbjct: 271 MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 330

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLVSIL 92
           RYDFGTSVGEASKEVILKLKQVTSELL  ++
Sbjct: 331 RYDFGTSVGEASKEVILKLKQVTSELLYDVV 361

[Close]

BLAST of CsaV3_2G010230 vs. NCBI nr
Match: KGN61325.1 (hypothetical protein Csa_2G083720 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 8.9e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
          MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD
Sbjct: 1  MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60

Query: 61 RYDFGTSVGEASKEVILKLKQVTSELL 88
          RYDFGTSVGEASKEVILKLKQVTSELL
Sbjct: 61 RYDFGTSVGEASKEVILKLKQVTSELL 87

[Close]

BLAST of CsaV3_2G010230 vs. NCBI nr
Match: XP_022144530.1 (uncharacterized protein LOC111014191 [Momordica charantia] >XP_022144531.1 uncharacterized protein LOC111014191 [Momordica charantia] >XP_022144532.1 uncharacterized protein LOC111014191 [Momordica charantia] >XP_022144533.1 uncharacterized protein LOC111014191 [Momordica charantia])

HSP 1 Score: 140.6 bits (353), Expect = 3.2e-30
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI  LINSAVLDQDV GGLRWPL KASSGDRFR+  VWHTVAKSYV+  +RLKLRN D
Sbjct: 292 MEGIAYLINSAVLDQDVKGGLRWPLGKASSGDRFRVVGVWHTVAKSYVNAFMRLKLRNAD 351

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELL 88
           RYDF TSVGEA+KE+ LKLKQ TSELL
Sbjct: 352 RYDFKTSVGEATKEITLKLKQFTSELL 378

[Close]

BLAST of CsaV3_2G010230 vs. NCBI nr
Match: KGN61323.1 (hypothetical protein Csa_2G083700 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 9.2e-30
Identity = 67/93 (72.04%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI+ LINSAVLDQD+MGGLRWPL KA+SG+RFR+  VWHTV+K YV+P +RL+LRN +
Sbjct: 279 MEGIVGLINSAVLDQDMMGGLRWPLGKATSGNRFRVVEVWHTVSKYYVNPFLRLQLRNAN 338

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLVSILIT 94
           RYD  TS+GEASKEV L LK VT ELLVSI +T
Sbjct: 339 RYDLSTSIGEASKEVTLNLKHVTFELLVSIFLT 371

[Close]

BLAST of CsaV3_2G010230 vs. NCBI nr
Match: XP_023538041.1 (uncharacterized protein LOC111798921 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023538042.1 uncharacterized protein LOC111798921 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023538043.1 uncharacterized protein LOC111798921 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 1.7e-28
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGILDLINSA+LD+DV GGLRWPL KASSGDRF++   WHTV++SYV+P VR+KLRN D
Sbjct: 282 MEGILDLINSAILDKDVKGGLRWPLGKASSGDRFKVVGAWHTVSQSYVNPFVRIKLRNAD 341

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELL 88
           RYDF T VGE S EV  K+K++TSELL
Sbjct: 342 RYDFKTLVGEVSNEVTFKMKRLTSELL 368

[Close]

BLAST of CsaV3_2G010230 vs. TAIR10
Match: AT3G54310.1 (unknown protein)

HSP 1 Score: 89.0 bits (219), Expect = 2.0e-18
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 6   DLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVDRYDFG 65
           +L +SAV+D  V GGL+WPL K+S  DR+ +  VWHTV  +Y++  +RL++R  DRYDF 
Sbjct: 248 ELTDSAVVDPTVKGGLKWPLGKSSCADRYIVCGVWHTVTTTYINQTMRLQIREADRYDFR 307

Query: 66  TSVGEASKEVILKLKQVTSELL 88
           T VG  S EV  KLK +++ LL
Sbjct: 308 TGVGGTSSEVNFKLKALSTILL 329

[Close]

BLAST of CsaV3_2G010230 vs. TAIR10
Match: AT2G38430.1 (unknown protein)

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-12
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 7   LINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVDRYDFGT 66
           L+ SA +D +V GGLRWP  KA S D ++   V H  A  Y +  +RL++R  DR++  T
Sbjct: 282 LLESATVDPNVKGGLRWPFGKALSEDGYKEFEVCHVRATIYKNKTLRLRVRETDRFNETT 341

Query: 67  SVGEASKEVILKLKQVTSEL 87
             GE  +EV L LK + +++
Sbjct: 342 GTGETKREVSLTLKDIDTKI 361

[Close]

BLAST of CsaV3_2G010230 vs. TrEMBL
Match: tr|A0A0A0LHA6|A0A0A0LHA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083720 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.9e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
          MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD
Sbjct: 1  MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60

Query: 61 RYDFGTSVGEASKEVILKLKQVTSELL 88
          RYDFGTSVGEASKEVILKLKQVTSELL
Sbjct: 61 RYDFGTSVGEASKEVILKLKQVTSELL 87

[Close]

BLAST of CsaV3_2G010230 vs. TrEMBL
Match: tr|A0A0A0LHP7|A0A0A0LHP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083700 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.1e-30
Identity = 67/93 (72.04%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI+ LINSAVLDQD+MGGLRWPL KA+SG+RFR+  VWHTV+K YV+P +RL+LRN +
Sbjct: 279 MEGIVGLINSAVLDQDMMGGLRWPLGKATSGNRFRVVEVWHTVSKYYVNPFLRLQLRNAN 338

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELLVSILIT 94
           RYD  TS+GEASKEV L LK VT ELLVSI +T
Sbjct: 339 RYDLSTSIGEASKEVTLNLKHVTFELLVSIFLT 371

[Close]

BLAST of CsaV3_2G010230 vs. TrEMBL
Match: tr|A0A1S3B4Y2|A0A1S3B4Y2_CUCME (uncharacterized protein LOC103485862 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485862 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-28
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI+ LINSAVLDQD+MGGLRWPL KA+SGDRFR+  VWHTV+K YV+P+++L+LRN +
Sbjct: 279 MEGIVGLINSAVLDQDMMGGLRWPLGKATSGDRFRVLEVWHTVSKYYVNPLLKLQLRNAN 338

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELL 88
           RYD  TS+GEASKEV L LK+VT ELL
Sbjct: 339 RYDLRTSIGEASKEVTLSLKRVTFELL 365

[Close]

BLAST of CsaV3_2G010230 vs. TrEMBL
Match: tr|A0A1S3B522|A0A1S3B522_CUCME (uncharacterized protein LOC103485862 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485862 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-28
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1   MEGILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVD 60
           MEGI+ LINSAVLDQD+MGGLRWPL KA+SGDRFR+  VWHTV+K YV+P+++L+LRN +
Sbjct: 279 MEGIVGLINSAVLDQDMMGGLRWPLGKATSGDRFRVLEVWHTVSKYYVNPLLKLQLRNAN 338

Query: 61  RYDFGTSVGEASKEVILKLKQVTSELL 88
           RYD  TS+GEASKEV L LK+VT ELL
Sbjct: 339 RYDLRTSIGEASKEVTLSLKRVTFELL 365

[Close]

BLAST of CsaV3_2G010230 vs. TrEMBL
Match: tr|A0A2I0JKF0|A0A2I0JKF0_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_023158 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.5e-24
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 3   GILDLINSAVLDQDVMGGLRWPLEKASSGDRFRLDRVWHTVAKSYVSPVVRLKLRNVDRY 62
           GI +LI SAVLD +V GGLRWPL KASSGDRFR+  VWHT++++Y SP+ RLK+RN DR+
Sbjct: 96  GIGELIGSAVLDPNVKGGLRWPLGKASSGDRFRVIGVWHTISRAYASPMFRLKVRNADRF 155

Query: 63  DFGTSVGEASKEVILKLKQVTSELL 88
           DF TS GEA+ EV LKLK + SELL
Sbjct: 156 DFKTSTGEATGEVSLKLKGLASELL 180

The following BLAST results are available for this feature:

BLAST of CsaV3_2G010230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650137.1	5.2e-41	95.60	PREDICTED: uncharacterized protein LOC105434728 [Cucumis sativus]	[more]
KGN61325.1	8.9e-41	100.00	hypothetical protein Csa_2G083720 [Cucumis sativus]	[more]
XP_022144530.1	3.2e-30	80.46	uncharacterized protein LOC111014191 [Momordica charantia] >XP_022144531.1 uncha...	[more]
KGN61323.1	9.2e-30	72.04	hypothetical protein Csa_2G083700 [Cucumis sativus]	[more]
XP_023538041.1	1.7e-28	72.41	uncharacterized protein LOC111798921 isoform X3 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of CsaV3_2G010230 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54310.1	2.0e-18	50.00	unknown protein	[more]
AT2G38430.1	4.7e-12	40.00	unknown protein	[more]

BLAST of CsaV3_2G010230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G010230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHA6\|A0A0A0LHA6_CUCSA	5.9e-41	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083720 PE=4 SV=1	[more]
tr\|A0A0A0LHP7\|A0A0A0LHP7_CUCSA	6.1e-30	72.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083700 PE=4 SV=1	[more]
tr\|A0A1S3B4Y2\|A0A1S3B4Y2_CUCME	3.3e-28	72.41	uncharacterized protein LOC103485862 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B522\|A0A1S3B522_CUCME	3.3e-28	72.41	uncharacterized protein LOC103485862 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I0JKF0\|A0A2I0JKF0_PUNGR	8.5e-24	67.06	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_023158 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G010230.1	CsaV3_2G010230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35481	FAMILY NOT NAMED	coord: 3..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G010230	Lsi11G009200	Bottle gourd (USVL1VR-Ls)	cuclsiB108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G010230	Silver-seed gourd	carcucB0519
CsaV3_2G010230	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G010230	Cucumber (Gy14) v1	cgycucB426
CsaV3_2G010230	Cucurbita maxima (Rimu)	cmacucB0193
CsaV3_2G010230	Cucurbita maxima (Rimu)	cmacucB0928
CsaV3_2G010230	Cucurbita moschata (Rifu)	cmocucB0177
CsaV3_2G010230	Cucurbita moschata (Rifu)	cmocucB0920
CsaV3_2G010230	Cucurbita moschata (Rifu)	cmocucB0926
CsaV3_2G010230	Cucurbita pepo (Zucchini)	cpecucB0008
CsaV3_2G010230	Cucurbita pepo (Zucchini)	cpecucB1005
CsaV3_2G010230	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G010230	Melon (DHL92) v3.5.1	cucmeB138
CsaV3_2G010230	Melon (DHL92) v3.5.1	cucmeB141
CsaV3_2G010230	Melon (DHL92) v3.5.1	cucmeB144
CsaV3_2G010230	Melon (DHL92) v3.6.1	cucmedB134
CsaV3_2G010230	Melon (DHL92) v3.6.1	cucmedB131
CsaV3_2G010230	Melon (DHL92) v3.6.1	cucmedB137
CsaV3_2G010230	Watermelon (Charleston Gray)	cucwcgB119
CsaV3_2G010230	Watermelon (97103) v2	cucwmbB114
CsaV3_2G010230	Wax gourd	cucwgoB146