CsaV3_2G009620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G009620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 6121646 .. 6121965 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACAAACAAAGGTAAATGTGTTGAAGAAAAGAAGCCTTTTGGCTTCTACCTTGCAGCATCGCGGTGTTGTAAGGGAGATAGGGCCTTATTCACGAAAAGAGTCTGGTGTTGTAATGCTCCGAGATGTTGTCCTACGTGAAGACTTTTCAGCTTCGCGACGACTTCATGTTTTTATACATATGATTTTCACCATCGTGTTTAACCTATCTCTAATCGCATCTATTTATCTTTTGTTTTCTTCCAGTTTTTAGAGCTCTTTTTGCTATTTTGGTTCCTGAACACTACCTTACCATCCAACATGTGGATGAGAGGCTAA

mRNA sequence

ATGCCACAAACAAAGGTAAATGTGTTGAAGAAAAGAAGCCTTTTGGCTTCTACCTTGCAGCATCGCGGTGTTGTAAGGGAGATAGGGCCTTATTCACGAAAAGAGTCTGGTGTTGTAATGCTCCGAGATGTTGTCCTACGTGAAGACTTTTCAGCTTCGCGACGACTTCATTTTTTAGAGCTCTTTTTGCTATTTTGGTTCCTGAACACTACCTTACCATCCAACATGTGGATGAGAGGCTAA

Coding sequence (CDS)

ATGCCACAAACAAAGGTAAATGTGTTGAAGAAAAGAAGCCTTTTGGCTTCTACCTTGCAGCATCGCGGTGTTGTAAGGGAGATAGGGCCTTATTCACGAAAAGAGTCTGGTGTTGTAATGCTCCGAGATGTTGTCCTACGTGAAGACTTTTCAGCTTCGCGACGACTTCATTTTTTAGAGCTCTTTTTGCTATTTTGGTTCCTGAACACTACCTTACCATCCAACATGTGGATGAGAGGCTAA

Protein sequence

MPQTKVNVLKKRSLLASTLQHRGVVREIGPYSRKESGVVMLRDVVLREDFSASRRLHFLELFLLFWFLNTTLPSNMWMRG
Homology
[Close]
BLAST of CsaV3_2G009620 vs. NCBI nr
Match: KGN61256.1 (hypothetical protein Csa_2G074180 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 1.0e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MPQTKVNVLKKRSLLASTLQHRGVVREIGPYSRKESGVVMLRDVVLREDFSASRRLHFLE 60
          MPQTKVNVLKKRSLLASTLQHRGVVREIGPYSRKESGVVMLRDVVLREDFSASRRLHFLE
Sbjct: 1  MPQTKVNVLKKRSLLASTLQHRGVVREIGPYSRKESGVVMLRDVVLREDFSASRRLHFLE 60

Query: 61 LFLLFWFLNTTLPSNMWMRG 81
          LFLLFWFLNTTLPSNMWMRG
Sbjct: 61 LFLLFWFLNTTLPSNMWMRG 80

[Close]
BLAST of CsaV3_2G009620 vs. TrEMBL
Match: tr|A0A0A0LMP9|A0A0A0LMP9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074180 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.6e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MPQTKVNVLKKRSLLASTLQHRGVVREIGPYSRKESGVVMLRDVVLREDFSASRRLHFLE 60
          MPQTKVNVLKKRSLLASTLQHRGVVREIGPYSRKESGVVMLRDVVLREDFSASRRLHFLE
Sbjct: 1  MPQTKVNVLKKRSLLASTLQHRGVVREIGPYSRKESGVVMLRDVVLREDFSASRRLHFLE 60

Query: 61 LFLLFWFLNTTLPSNMWMRG 81
          LFLLFWFLNTTLPSNMWMRG
Sbjct: 61 LFLLFWFLNTTLPSNMWMRG 80

The following BLAST results are available for this feature:
BLAST of CsaV3_2G009620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61256.11.0e-36100.00hypothetical protein Csa_2G074180 [Cucumis sativus][more]
BLAST of CsaV3_2G009620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LMP9|A0A0A0LMP9_CUCSA6.6e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074180 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G009620.1CsaV3_2G009620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G009620Silver-seed gourdcarcucB0005
CsaV3_2G009620Silver-seed gourdcarcucB0191
CsaV3_2G009620Cucumber (Gy14) v2cgybcucB064
CsaV3_2G009620Cucumber (Gy14) v1cgycucB287
CsaV3_2G009620Cucurbita maxima (Rimu)cmacucB0193
CsaV3_2G009620Cucurbita maxima (Rimu)cmacucB0928
CsaV3_2G009620Cucurbita moschata (Rifu)cmocucB0177
CsaV3_2G009620Cucurbita moschata (Rifu)cmocucB0920
CsaV3_2G009620Cucurbita pepo (Zucchini)cpecucB0108
CsaV3_2G009620Cucurbita pepo (Zucchini)cpecucB1005
CsaV3_2G009620Wild cucumber (PI 183967)cpicucB080
CsaV3_2G009620Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G009620Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G009620Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G009620Watermelon (Charleston Gray)cucwcgB119
CsaV3_2G009620Watermelon (97103) v2cucwmbB114
CsaV3_2G009620Wax gourdcucwgoB146