CsaV3_2G009370 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G009370
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 5853387 .. 5853578 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATGTTTTAAACAATATTATCTTTGGTGACATGATAGCAAAAGGAGACGTGCTGAATATGCATTGTGTTCAACCATGCTCTGACACTTATGATGACGAATCGTGTTATAATGATTGCATCAAAGAGAATCTTGGTGCCGGATTTTGTTACCCAAAGCTACCTAGCACAGATAAAGATTGTTGTTGTAGT

mRNA sequence

AATAATGTTTTAAACAATATTATCTTTGGTGACATGATAGCAAAAGGAGACGTGCTGAATATGCATTGTGTTCAACCATGCTCTGACACTTATGATGACGAATCGTGTTATAATGATTGCATCAAAGAGAATCTTGGTGCCGGATTTTGTTACCCAAAGCTACCTAGCACAGATAAAGATTGTTGTTGTAGT

Coding sequence (CDS)

AATAATGTTTTAAACAATATTATCTTTGGTGACATGATAGCAAAAGGAGACGTGCTGAATATGCATTGTGTTCAACCATGCTCTGACACTTATGATGACGAATCGTGTTATAATGATTGCATCAAAGAGAATCTTGGTGCCGGATTTTGTTACCCAAAGCTACCTAGCACAGATAAAGATTGTTGTTGTAGT

Protein sequence

NNVLNNIIFGDMIAKGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLPSTDKDCCCS

Homology

[Close]

BLAST of CsaV3_2G009370 vs. NCBI nr
Match: KGN61227.1 (hypothetical protein Csa_2G070930 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-23
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 12 MIAKGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLPSTDKDCCCS 65
          M AKGD+LN+HCV+PCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCC+
Sbjct: 1  MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 53

[Close]

BLAST of CsaV3_2G009370 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 15 KGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLPSTDKDCCCS 65
          KGDVLN+HCV+PCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCC+
Sbjct: 25 KGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCN 74

[Close]

BLAST of CsaV3_2G009370 vs. NCBI nr
Match: KGN61229.1 (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 4.2e-22
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 15 KGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLPSTDKDCCCS 65
          KGDVLN+HCV+PC DTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCC+
Sbjct: 25 KGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 74

[Close]

BLAST of CsaV3_2G009370 vs. TrEMBL
Match: tr|A0A0A0LKF5|A0A0A0LKF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.6e-24
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 12 MIAKGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLPSTDKDCCCS 65
          M AKGD+LN+HCV+PCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCC+
Sbjct: 1  MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 53

[Close]

BLAST of CsaV3_2G009370 vs. TrEMBL
Match: tr|A0A0A0LHG9|A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.3e-23
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 15 KGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLPSTDKDCCCS 65
          KGDVLN+HCV+PCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCC+
Sbjct: 25 KGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCN 74

[Close]

BLAST of CsaV3_2G009370 vs. TrEMBL
Match: tr|A0A0A0LJG5|A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.8e-22
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 15 KGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLPSTDKDCCCS 65
          KGDVLN+HCV+PC DTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCC+
Sbjct: 25 KGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 74

[Close]

BLAST of CsaV3_2G009370 vs. TrEMBL
Match: tr|A0A0A0L1R8|A0A0A0L1R8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.9e-04
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 15 KGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLP--STDKDCCCS 65
          +GD L  +CV PCS+   D  C   CI+++ GAGFC PKLP  S  K CCC+
Sbjct: 25 EGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCN 75

The following BLAST results are available for this feature:

BLAST of CsaV3_2G009370 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61227.1	1.3e-23	88.68	hypothetical protein Csa_2G070930 [Cucumis sativus]	[more]
KGN61228.1	1.1e-22	92.00	hypothetical protein Csa_2G071930 [Cucumis sativus]	[more]
KGN61229.1	4.2e-22	90.00	hypothetical protein Csa_2G072430 [Cucumis sativus]	[more]

BLAST of CsaV3_2G009370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G009370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G009370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LKF5\|A0A0A0LKF5_CUCSA	8.6e-24	88.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1	[more]
tr\|A0A0A0LHG9\|A0A0A0LHG9_CUCSA	7.3e-23	92.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1	[more]
tr\|A0A0A0LJG5\|A0A0A0LJG5_CUCSA	2.8e-22	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1	[more]
tr\|A0A0A0L1R8\|A0A0A0L1R8_CUCSA	9.9e-04	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G009370.1	CsaV3_2G009370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRODOM	PD864278		coord: 15..63 e-value: 0.001 score: 92.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G009370	Silver-seed gourd	carcucB0005
CsaV3_2G009370	Silver-seed gourd	carcucB0191
CsaV3_2G009370	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G009370	Cucumber (Gy14) v1	cgycucB287
CsaV3_2G009370	Cucurbita maxima (Rimu)	cmacucB0193
CsaV3_2G009370	Cucurbita maxima (Rimu)	cmacucB0928
CsaV3_2G009370	Cucurbita moschata (Rifu)	cmocucB0177
CsaV3_2G009370	Cucurbita moschata (Rifu)	cmocucB0920
CsaV3_2G009370	Cucurbita pepo (Zucchini)	cpecucB0108
CsaV3_2G009370	Cucurbita pepo (Zucchini)	cpecucB1005
CsaV3_2G009370	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G009370	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G009370	Melon (DHL92) v3.5.1	cucmeB141
CsaV3_2G009370	Melon (DHL92) v3.6.1	cucmedB134
CsaV3_2G009370	Watermelon (Charleston Gray)	cucwcgB119
CsaV3_2G009370	Watermelon (97103) v1	cucwmB175
CsaV3_2G009370	Watermelon (97103) v2	cucwmbB114