CsaV3_2G009330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G009330
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUBN2_2 domain-containing protein
Locationchr2 : 5829460 .. 5829723 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAGTTATAATACTCAGAAGGATAAGTGGAGTACTAATAAGCTTAGCTCACAATGTGCGCAGGAAGAAGATAAGATTAAGAGAGAAAGGACTGAAAGTGCTCACTTCTCAACTAACTATCATGGTAAGAATAAAAGAAAACATACAGATGTTGTAGAAGGGAAATCTCAGTTAAATAAGAAACAAGCTATAGAGAATCCTTGTTTTTTCTACAAAAAGAAAGGTCATCTCAAGAAAGATTGTTCCATGTACGCCAAATGGCAT

mRNA sequence

ATAAGTTATAATACTCAGAAGGATAAGTGGAGTACTAATAAGCTTAGCTCACAATGTGCGCAGGAAGAAGATAAGATTAAGAGAGAAAGGACTGAAAGTGCTCACTTCTCAACTAACTATCATGGTAAGAATAAAAGAAAACATACAGATGTTGTAGAAGGGAAATCTCAGTTAAATAAGAAACAAGCTATAGAGAATCCTTGTTTTTTCTACAAAAAGAAAGGTCATCTCAAGAAAGATTGTTCCATGTACGCCAAATGGCAT

Coding sequence (CDS)

ATAAGTTATAATACTCAGAAGGATAAGTGGAGTACTAATAAGCTTAGCTCACAATGTGCGCAGGAAGAAGATAAGATTAAGAGAGAAAGGACTGAAAGTGCTCACTTCTCAACTAACTATCATGGTAAGAATAAAAGAAAACATACAGATGTTGTAGAAGGGAAATCTCAGTTAAATAAGAAACAAGCTATAGAGAATCCTTGTTTTTTCTACAAAAAGAAAGGTCATCTCAAGAAAGATTGTTCCATGTACGCCAAATGGCAT

Protein sequence

ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNKKQAIENPCFFYKKKGHLKKDCSMYAKWH
Homology
[Close]
BLAST of CsaV3_2G009330 vs. NCBI nr
Match: PNX87951.1 (hypothetical protein L195_g044051, partial [Trifolium pratense])

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-16
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 0 

Query: 1   ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNK 60
           +SYNTQKDKWS N+L S C QEE+++KRE+TESAH  T    +NKRK       K++  K
Sbjct: 156 VSYNTQKDKWSLNELISHCVQEEERLKREKTESAHLVTG--SQNKRKKAAGNFSKNKKAK 215

Query: 61  KQAIENPCFFYKKKGHLKKDCSMYAKW 88
           +Q  E+ CFF KK GH+KKDCS YA W
Sbjct: 216 EQHKESTCFFCKKAGHMKKDCSKYAAW 240

[Close]
BLAST of CsaV3_2G009330 vs. NCBI nr
Match: XP_024641115.1 (uncharacterized protein LOC112422451 [Medicago truncatula])

HSP 1 Score: 89.7 bits (221), Expect = 5.2e-15
Identity = 51/91 (56.04%), Postives = 63/91 (69.23%), Query Frame = 0 

Query: 1   ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNK 60
           +SYNTQK+KW+ N+L S C QEE+++KRE+TESAH +TN   +NKRK T    G S  NK
Sbjct: 189 VSYNTQKEKWTLNELISHCVQEEERLKREKTESAHLATN--SQNKRKRT---AGNSSQNK 248

Query: 61  KQAIENP----CFFYKKKGHLKKDCSMYAKW 88
           K A E P    CFF KK GH+K DCS +A W
Sbjct: 249 K-AKEQPAGVKCFFCKKYGHMKNDCSKFAAW 273

[Close]
BLAST of CsaV3_2G009330 vs. NCBI nr
Match: XP_010656281.1 (PREDICTED: uncharacterized protein LOC104880640 [Vitis vinifera])

HSP 1 Score: 89.4 bits (220), Expect = 6.8e-15
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 1   ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTD--VVEGKSQL 60
           +SYN QKDKW+ N+L S C QEE+++K+++TESAH ++    K KRK+ D  V       
Sbjct: 160 VSYNCQKDKWTLNELISFCVQEEERLKQDKTESAHLASTSKDKGKRKNKDNKVAASNGPE 219

Query: 61  NKKQAIENPCFFYKKKGHLKKDCSMYAKW 88
            KKQ +E  CFFY K GH KK+C+ YA W
Sbjct: 220 QKKQKVEVTCFFYNKPGHTKKECTKYAAW 248

[Close]
BLAST of CsaV3_2G009330 vs. NCBI nr
Match: XP_025985570.1 (uncharacterized protein LOC113002411 [Glycine max])

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 0 

Query: 1   ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNK 60
           + YNTQKDKW  N+L S C QEE++++R+RTESAH ++    K ++K   V EG SQ  K
Sbjct: 160 LGYNTQKDKWFLNELISHCVQEEERLQRDRTESAHLTSTSQNKKRKKTKGVAEGTSQQKK 219

Query: 61  KQAIEN-PCFFYKKKGHLKKDCSMYAKW 88
           +   E   C+F KK GH+KK+C  YA W
Sbjct: 220 QNKDEEFTCYFCKKSGHMKKECPKYATW 247

[Close]
BLAST of CsaV3_2G009330 vs. NCBI nr
Match: XP_019074950.1 (PREDICTED: uncharacterized protein LOC109122497 [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 2.6e-14
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 1   ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTD--VVEGKSQL 60
           +SYN QKDKW+ N+L S C QEE+++K+++TESAH ++    K KRK+ D  VV      
Sbjct: 39  VSYNCQKDKWTLNELISFCVQEEERLKQDKTESAHLASTSKDKGKRKNKDNKVVASNGPE 98

Query: 61  NKKQAIENPCFFYKKKGHLKKDCSMYAKW 88
            KKQ +E  CFF  K GH KK+C+ YA W
Sbjct: 99  QKKQKVEVTCFFCNKPGHTKKECTKYAAW 127

[Close]
BLAST of CsaV3_2G009330 vs. TrEMBL
Match: tr|A0A2K3MAZ2|A0A2K3MAZ2_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g044051 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 0 

Query: 1   ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNK 60
           +SYNTQKDKWS N+L S C QEE+++KRE+TESAH  T    +NKRK       K++  K
Sbjct: 156 VSYNTQKDKWSLNELISHCVQEEERLKREKTESAHLVTG--SQNKRKKAAGNFSKNKKAK 215

Query: 61  KQAIENPCFFYKKKGHLKKDCSMYAKW 88
           +Q  E+ CFF KK GH+KKDCS YA W
Sbjct: 216 EQHKESTCFFCKKAGHMKKDCSKYAAW 240

[Close]
BLAST of CsaV3_2G009330 vs. TrEMBL
Match: tr|A5BPN8|A5BPN8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_036929 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-14
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 1   ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTD--VVEGKSQL 60
           +SYN QKDKW+ N+L S C QEE+++K+++TESAH ++    K KRK+ D  V       
Sbjct: 181 VSYNCQKDKWTLNELISFCVQEEERLKQDKTESAHLASTSKDKGKRKNKDNKVAASNGPE 240

Query: 61  NKKQAIENPCFFYKKKGHLKKDCSMYAKW 88
            KKQ +E  CFF  K GH KK+C+ YA W
Sbjct: 241 QKKQKVEVTCFFCNKPGHTKKECTKYAAW 269

[Close]
BLAST of CsaV3_2G009330 vs. TrEMBL
Match: tr|A5APP5|A5APP5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032622 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-14
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 1   ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTD--VVEGKSQL 60
           +SYN QKDKW+ N+L S C QEE+++K+++TESAH ++    K KRK+ D  V       
Sbjct: 145 VSYNCQKDKWTLNELISFCVQEEERLKQDKTESAHLASTSKDKGKRKNKDNKVAASNGPE 204

Query: 61  NKKQAIENPCFFYKKKGHLKKDCSMYAKW 88
            KKQ +E  CFF  K GH KK+C+ YA W
Sbjct: 205 QKKQKVEVTCFFCNKPGHTKKECTKYAAW 233

[Close]
BLAST of CsaV3_2G009330 vs. TrEMBL
Match: tr|A5BE46|A5BE46_VITVI (Uncharacterized protein (Fragment) OS=Vitis vinifera OX=29760 GN=VITISV_025855 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-14
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 1   ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTD--VVEGKSQL 60
           +SYN QKDKW+ N+L S C QEE+++K+++TESAH ++    K KRK+ D  V       
Sbjct: 178 VSYNCQKDKWTLNELISFCVQEEERLKQDKTESAHLASTSKDKGKRKNKDNKVAASNGPE 237

Query: 61  NKKQAIENPCFFYKKKGHLKKDCSMYAKW 88
            KKQ +E  CFF  K GH KK+C+ YA W
Sbjct: 238 QKKQKVEVTCFFCNKPGHTKKECTKYAAW 266

[Close]
BLAST of CsaV3_2G009330 vs. TrEMBL
Match: tr|A5AP37|A5AP37_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023299 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-14
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 1   ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTD--VVEGKSQL 60
           +SYN QKDKW+ N+L S C QEE+++K+++TESAH ++    K KRK+ D  V       
Sbjct: 223 VSYNCQKDKWTLNELISFCVQEEERLKQDKTESAHLASTSKDKGKRKNKDNKVAXSNGPE 282

Query: 61  NKKQAIENPCFFYKKKGHLKKDCSMYAKW 88
            KKQ +E  CFF  K GH KK+C+ YA W
Sbjct: 283 QKKQKVEVTCFFCNKPGHTKKECTKYAAW 311

The following BLAST results are available for this feature:
BLAST of CsaV3_2G009330 vs. NCBI nr
Match NameE-valueIdentityDescription
PNX87951.12.8e-1656.32hypothetical protein L195_g044051, partial [Trifolium pratense][more]
XP_024641115.15.2e-1556.04uncharacterized protein LOC112422451 [Medicago truncatula][more]
XP_010656281.16.8e-1549.44PREDICTED: uncharacterized protein LOC104880640 [Vitis vinifera][more]
XP_025985570.12.0e-1448.86uncharacterized protein LOC113002411 [Glycine max][more]
XP_019074950.12.6e-1449.44PREDICTED: uncharacterized protein LOC109122497 [Vitis vinifera][more]
BLAST of CsaV3_2G009330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2K3MAZ2|A0A2K3MAZ2_TRIPR1.8e-1656.32Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g04405... [more]
tr|A5BPN8|A5BPN8_VITVI5.0e-1448.31Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_036929 PE=4 SV=1[more]
tr|A5APP5|A5APP5_VITVI5.0e-1448.31Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032622 PE=4 SV=1[more]
tr|A5BE46|A5BE46_VITVI5.0e-1448.31Uncharacterized protein (Fragment) OS=Vitis vinifera OX=29760 GN=VITISV_025855 P... [more]
tr|A5AP37|A5AP37_VITVI5.0e-1448.31Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023299 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G009330.1CsaV3_2G009330.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G009330Silver-seed gourdcarcucB0005
CsaV3_2G009330Silver-seed gourdcarcucB0191
CsaV3_2G009330Cucumber (Gy14) v2cgybcucB064
CsaV3_2G009330Cucumber (Gy14) v1cgycucB287
CsaV3_2G009330Cucurbita maxima (Rimu)cmacucB0193
CsaV3_2G009330Cucurbita maxima (Rimu)cmacucB0928
CsaV3_2G009330Cucurbita moschata (Rifu)cmocucB0177
CsaV3_2G009330Cucurbita moschata (Rifu)cmocucB0920
CsaV3_2G009330Cucurbita pepo (Zucchini)cpecucB0108
CsaV3_2G009330Cucurbita pepo (Zucchini)cpecucB1005
CsaV3_2G009330Wild cucumber (PI 183967)cpicucB080
CsaV3_2G009330Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G009330Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G009330Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G009330Watermelon (Charleston Gray)cucwcgB119
CsaV3_2G009330Watermelon (97103) v1cucwmB175
CsaV3_2G009330Watermelon (97103) v2cucwmbB114