CsaV3_2G008980 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G008980
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 5445619 .. 5446145 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACATTATCATATAGTTGATTAAGTATGGAAAATATTTTCTATTGGGACCATATACAACATGACCGTCGCTATAAATAATACACAAGTTGTATATATTCTTGGACAAATTAATTTCATCAAGTGAAGAAAATGGGAAGGCCAATTGCTGCTACTATTGGAGATGTTACCACGTCCATCCCGGGGGGCTTAAGTTTGCTTTCTCTCATTCTTCTATCCATCTCTCTCCTATCAATGATAATATTTGCTTGTAGCAACTTCTTTAATACTCGAAGGAGAAGAGGTGGCGATGATGGTGGTGCAGGTGGTTGTGCTTGTGGTGGAGGAGGCTGCGGTGGTGGAGGTTGCGGTGGTGGAGATTGACGTTGTTTGTTGTTATTTTATGAGTTGATTGATGCTATTTTTATAGATGTGTGATTTTTGTAGTTCAACTCAAACATTTGTAAATAGAGGTGAATTCAAATTTTTATCTCTCCATGGATATATGCTAGTAAAACTATATGCAGATTGACCTTTTTTAGGTGTGT

mRNA sequence

ATGGGAAGGCCAATTGCTGCTACTATTGGAGATGTTACCACGTCCATCCCGGGGGGCTTAAGTTTGCTTTCTCTCATTCTTCTATCCATCTCTCTCCTATCAATGATAATATTTGCTTGTAGCAACTTCTTTAATACTCGAAGGAGAAGAGGTGGCGATGATGGTGGTGCAGGTGGTTGTGCTTGTGGTGGAGGAGGCTGCGGTGGTGGAGGTTGCGGTGGTGGAGATTGA

Coding sequence (CDS)

ATGGGAAGGCCAATTGCTGCTACTATTGGAGATGTTACCACGTCCATCCCGGGGGGCTTAAGTTTGCTTTCTCTCATTCTTCTATCCATCTCTCTCCTATCAATGATAATATTTGCTTGTAGCAACTTCTTTAATACTCGAAGGAGAAGAGGTGGCGATGATGGTGGTGCAGGTGGTTGTGCTTGTGGTGGAGGAGGCTGCGGTGGTGGAGGTTGCGGTGGTGGAGATTGA

Protein sequence

MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAGGCACGGGGCGGGGCGGGD

Homology

[Close]

BLAST of CsaV3_2G008980 vs. NCBI nr
Match: KGN61189.1 (hypothetical protein Csa_2G062640 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 5.6e-05
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLS 30
          MGRPIAATIGDVTTSIPGGLSLLSLILLS
Sbjct: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLS 29

[Close]

BLAST of CsaV3_2G008980 vs. TrEMBL
Match: tr|A0A0A0LJD5|A0A0A0LJD5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-05
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLS 30
          MGRPIAATIGDVTTSIPGGLSLLSLILLS
Sbjct: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLS 29

The following BLAST results are available for this feature:

BLAST of CsaV3_2G008980 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61189.1	5.6e-05	100.00	hypothetical protein Csa_2G062640 [Cucumis sativus]	[more]

BLAST of CsaV3_2G008980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G008980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G008980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJD5\|A0A0A0LJD5_CUCSA	3.7e-05	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G008980.1	CsaV3_2G008980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35420	FAMILY NOT NAMED	coord: 13..75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G008980	CSPI02G06550	Wild cucumber (PI 183967)	cpicucB080

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G008980	Silver-seed gourd	carcucB0005
CsaV3_2G008980	Silver-seed gourd	carcucB0191
CsaV3_2G008980	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G008980	Cucurbita maxima (Rimu)	cmacucB0193
CsaV3_2G008980	Cucurbita maxima (Rimu)	cmacucB0928
CsaV3_2G008980	Cucurbita moschata (Rifu)	cmocucB0177
CsaV3_2G008980	Cucurbita moschata (Rifu)	cmocucB0920
CsaV3_2G008980	Cucurbita pepo (Zucchini)	cpecucB0108
CsaV3_2G008980	Cucurbita pepo (Zucchini)	cpecucB1005
CsaV3_2G008980	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G008980	Melon (DHL92) v3.5.1	cucmeB141
CsaV3_2G008980	Melon (DHL92) v3.6.1	cucmedB134
CsaV3_2G008980	Watermelon (Charleston Gray)	cucwcgB119
CsaV3_2G008980	Watermelon (97103) v1	cucwmB175
CsaV3_2G008980	Watermelon (97103) v2	cucwmbB114
CsaV3_2G008980	Wax gourd	cucwgoB145