CsaV3_2G008950 (gene) Cucumber (Chinese Long) v3

NameCsaV3_2G008950
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 5376614 .. 5376888 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGAGACATCGGATGTTGAGATCGAAGACGAATGGGTTTCGTCGTCTAGAGTTCGAACAAAATGGATGTGTCTCGAATCTGAGACGGAGGAGGAGACGCAAAGGGTGAGATCTAAGACGGATGGGTTTCGCTGTCTAGGGTTCGGACAAAATGGATGTGTCTCGAATCTAAGACAGAGGAGGAGACATCGAACTGAATCTAAGACTGAGGAGGAGACGTTGGGGTTGAGATCGAAGACGAGAAAGGCAAAGGTGGAAGGAAGTGAGCC

mRNA sequence

ATGGAGAAGGAGACATCGGATGTTGAGATCGAAGACGAATGGGTTTCGTCGTCTAGAGTTCGAACAAAATGGATGTGTCTCGAATCTGAGACGGAGGAGGAGACGCAAAGGGTGAGATCTAAGACGGATGGGTTTCGCTGTCTAGGGTTCGGACAAAATGGATGTGTCTCGAATCTAAGACAGAGGAGGAGACATCGAACTGAATCTAAGACTGAGGAGGAGACGTTGGGGTTGAGATCGAAGACGAGAAAGGCAAAGGTGGAAGGAAGTGAGCC

Coding sequence (CDS)

ATGGAGAAGGAGACATCGGATGTTGAGATCGAAGACGAATGGGTTTCGTCGTCTAGAGTTCGAACAAAATGGATGTGTCTCGAATCTGAGACGGAGGAGGAGACGCAAAGGGTGAGATCTAAGACGGATGGGTTTCGCTGTCTAGGGTTCGGACAAAATGGATGTGTCTCGAATCTAAGACAGAGGAGGAGACATCGAACTGAATCTAAGACTGAGGAGGAGACGTTGGGGTTGAGATCGAAGACGAGAAAGGCAAAGGTGGAAGGAAGTGAGCC

Protein sequence

MEKETSDVEIEDEWVSSSRVRTKWMCLESETEEETQRVRSKTDGFRCLGFGQNGCVSNLRQRRRHRTESKTEEETLGLRSKTRKAKVEGSEX
BLAST of CsaV3_2G008950 vs. NCBI nr
Match: KGN61186.1 (hypothetical protein Csa_2G062615 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 7.6e-33
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MEKETSDVEIEDEWVSSSRVRTKWMCLESETEEETQRVRSKTDGFRCLGFGQNGCVSNLR 60
          MEKETSDVEIEDEWVSSSRVRTKWMCLESETEEETQRVRSKTDGFRCLGFGQNGCVSNLR
Sbjct: 1  MEKETSDVEIEDEWVSSSRVRTKWMCLESETEEETQRVRSKTDGFRCLGFGQNGCVSNLR 60

Query: 61 QRRRHRTXXXXXXXXXXXXXXXRKAKVEGSE 92
          QRRRHRTXXXXXXXXXXXXXXXRKAKVEGSE
Sbjct: 61 QRRRHRTXXXXXXXXXXXXXXXRKAKVEGSE 91

BLAST of CsaV3_2G008950 vs. TrEMBL
Match: tr|A0A0A0LMI2|A0A0A0LMI2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062615 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.0e-33
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MEKETSDVEIEDEWVSSSRVRTKWMCLESETEEETQRVRSKTDGFRCLGFGQNGCVSNLR 60
          MEKETSDVEIEDEWVSSSRVRTKWMCLESETEEETQRVRSKTDGFRCLGFGQNGCVSNLR
Sbjct: 1  MEKETSDVEIEDEWVSSSRVRTKWMCLESETEEETQRVRSKTDGFRCLGFGQNGCVSNLR 60

Query: 61 QRRRHRTXXXXXXXXXXXXXXXRKAKVEGSE 92
          QRRRHRTXXXXXXXXXXXXXXXRKAKVEGSE
Sbjct: 61 QRRRHRTXXXXXXXXXXXXXXXRKAKVEGSE 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61186.17.6e-33100.00hypothetical protein Csa_2G062615 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LMI2|A0A0A0LMI2_CUCSA5.0e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062615 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G008950.1CsaV3_2G008950.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..92

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G008950CSPI02G06520Wild cucumber (PI 183967)cpicucB080
The following gene(s) are paralogous to this gene:

None