CsaV3_2G007250 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G007250
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 3651614 .. 3652066 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTGCGACCGCATCCATTGCAATGAGGATTCTCAAGTCCCTCTTCCTCTCGACCAATGGGCTATCTGGTGTTGGTGGTCTACAGGAAGCCTCTTCTCTTGGTGCTGCTCATTCAGCCTCGACCATATTGGCATAGTCTTTCTGATTGAAGTAAGAAATTGCCTGCACCAATGCCTGCCTGACCTGGCTTCAACCGATTCTGCAAGTCTTGAGAGCAGCTTTCGTTACTGTATCATCAGTGCTGGCCTGAAGTTCAACAATGAACTGAGGTCCTGGAAGTGTTTCTCAGCACTTGGTTATTTGCTATCAAGACCAAACCAACATCATCTGCTGGACCTTTCAGATTTTCATTGAAGGTTTTATTGCAAAACCCATAATCCTCATTTTGATGGCATATTCGATTTATCTGCTGCTGTGTTGCCGGGTCACCCAAAGCTGGATGAACAATGA

mRNA sequence

ATGACCTGCGACCGCATCCATTGCAATGAGGATTCTCAAGTCCCTCTTCCTCTCGACCAATGGGCTATCTGGTGTTGGTGGTCTACAGGAAGCCTCTTCTCTTGGTGCTGCTCATTCAGCCTCGACCATATTGGCATAGTCTTTCTGATTGAAGTAAGAAATTGCCTGCACCAATGCCTGCCTGACCTGGCTTCAACCGATTCTGCAAGTCTTGAGAGCAGCTTTCGTTACTGTATCATCAGTGCTGGCCTGAAGTTCAACAATGAACTGAGGTTTTATTGCAAAACCCATAATCCTCATTTTGATGGCATATTCGATTTATCTGCTGCTGTGTTGCCGGGTCACCCAAAGCTGGATGAACAATGA

Coding sequence (CDS)

ATGACCTGCGACCGCATCCATTGCAATGAGGATTCTCAAGTCCCTCTTCCTCTCGACCAATGGGCTATCTGGTGTTGGTGGTCTACAGGAAGCCTCTTCTCTTGGTGCTGCTCATTCAGCCTCGACCATATTGGCATAGTCTTTCTGATTGAAGTAAGAAATTGCCTGCACCAATGCCTGCCTGACCTGGCTTCAACCGATTCTGCAAGTCTTGAGAGCAGCTTTCGTTACTGTATCATCAGTGCTGGCCTGAAGTTCAACAATGAACTGAGGTTTTATTGCAAAACCCATAATCCTCATTTTGATGGCATATTCGATTTATCTGCTGCTGTGTTGCCGGGTCACCCAAAGCTGGATGAACAATGA

Protein sequence

MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCLPDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDEQ

Homology

[Close]

BLAST of CsaV3_2G007250 vs. NCBI nr
Match: KGN61018.1 (hypothetical protein Csa_2G034710 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 4.6e-70
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL 60
           MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL
Sbjct: 1   MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL 60

Query: 61  PDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDE 120
           PDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDE
Sbjct: 61  PDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDE 120

Query: 121 Q 122
           Q
Sbjct: 121 Q 121

[Close]

BLAST of CsaV3_2G007250 vs. TrEMBL
Match: tr|A0A0A0LH07|A0A0A0LH07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034710 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 3.1e-70
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL 60
           MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL
Sbjct: 1   MTCDRIHCNEDSQVPLPLDQWAIWCWWSTGSLFSWCCSFSLDHIGIVFLIEVRNCLHQCL 60

Query: 61  PDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDE 120
           PDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDE
Sbjct: 61  PDLASTDSASLESSFRYCIISAGLKFNNELRFYCKTHNPHFDGIFDLSAAVLPGHPKLDE 120

Query: 121 Q 122
           Q
Sbjct: 121 Q 121

The following BLAST results are available for this feature:

BLAST of CsaV3_2G007250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61018.1	4.6e-70	100.00	hypothetical protein Csa_2G034710 [Cucumis sativus]	[more]

BLAST of CsaV3_2G007250 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G007250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G007250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LH07\|A0A0A0LH07_CUCSA	3.1e-70	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034710 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G007250.1	CsaV3_2G007250.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G007250	Carg25591	Silver-seed gourd	carcucB0974
CsaV3_2G007250	MELO3C031524.2	Melon (DHL92) v3.6.1	cucmedB134

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G007250	Silver-seed gourd	carcucB0598
CsaV3_2G007250	Cucurbita maxima (Rimu)	cmacucB0934
CsaV3_2G007250	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G007250	Cucumber (Gy14) v1	cgycucB097
CsaV3_2G007250	Cucurbita moschata (Rifu)	cmocucB0069
CsaV3_2G007250	Cucurbita moschata (Rifu)	cmocucB0924
CsaV3_2G007250	Cucurbita pepo (Zucchini)	cpecucB0115
CsaV3_2G007250	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G007250	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G007250	Melon (DHL92) v3.5.1	cucmeB119
CsaV3_2G007250	Melon (DHL92) v3.5.1	cucmeB141
CsaV3_2G007250	Melon (DHL92) v3.6.1	cucmedB113
CsaV3_2G007250	Watermelon (Charleston Gray)	cucwcgB137
CsaV3_2G007250	Watermelon (97103) v1	cucwmB159
CsaV3_2G007250	Watermelon (97103) v2	cucwmbB153
CsaV3_2G007250	Watermelon (97103) v2	cucwmbB123
CsaV3_2G007250	Wax gourd	cucwgoB136