CsaV3_2G004810 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G004810
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 2618661 .. 2619031 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGAAGATAAGAATGAGAAGACCAAAGTTATTGGTTGAAGAGTCGATAGAAGAAATTGAAGTAGTGATGTGTAGAAAAATGTTTTATTTTAAGGGGTGAGTGGTATTATTCTCATCTTCTTCCCCTTGGGTCTTCTAATAGGAGAAAAGAGGTGGGGAGAAAGATAGAGGCAGCCGACAGTCATAAAGCATACAAACAGGGAGAGAGACGCGGCATTCAACGGTGAGCTTCAAACGGCGTTCCACGGAGCGTTCACGTCGGCGTTTCCACATACCGACGATGAACTCCGAACGGCGGTTACCCAGTTGACGGCATTGAGTTCAGTTGACTCTGTTTGCGGCAGTGGTGCTCCGGCGGCGCATTAG

mRNA sequence

ATGAAGAAGAAGATAAGAATGAGAAGACCAAAGTTATTGGTTGAAGAGTCGATAGAAGAAATTGAAGTAGTGATGTGTAGAAAAATGTTTTATTTTAAGGGGGAGAGAGACGCGGCATTCAACGGTGAGCTTCAAACGGCGTTCCACGGAGCGTTCACGTCGGCGTTTCCACATACCGACGATGAACTCCGAACGGCGGTTACCCAGTTGACGGCATTGAGTTCAGTTGACTCTGTTTGCGGCAGTGGTGCTCCGGCGGCGCATTAG

Coding sequence (CDS)

ATGAAGAAGAAGATAAGAATGAGAAGACCAAAGTTATTGGTTGAAGAGTCGATAGAAGAAATTGAAGTAGTGATGTGTAGAAAAATGTTTTATTTTAAGGGGGAGAGAGACGCGGCATTCAACGGTGAGCTTCAAACGGCGTTCCACGGAGCGTTCACGTCGGCGTTTCCACATACCGACGATGAACTCCGAACGGCGGTTACCCAGTTGACGGCATTGAGTTCAGTTGACTCTGTTTGCGGCAGTGGTGCTCCGGCGGCGCATTAG

Protein sequence

MKKKIRMRRPKLLVEESIEEIEVVMCRKMFYFKGERDAAFNGELQTAFHGAFTSAFPHTDDELRTAVTQLTALSSVDSVCGSGAPAAH
Homology
[Close]
BLAST of CsaV3_2G004810 vs. NCBI nr
Match: KGN60858.1 (hypothetical protein Csa_2G015340 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 5.4e-28
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MKKKIRMRRPKLLVEESIEEIEVVMCRKMFYFKGERDAAXXXXXXXXXXXXXXXXXPHTD 60
          MKKKIRMRRPKLLVEESIEEIEVVMCRKMFYFKGERDAAXXXXXXXXXXXXXXXXXPHTD
Sbjct: 1  MKKKIRMRRPKLLVEESIEEIEVVMCRKMFYFKGERDAAXXXXXXXXXXXXXXXXXPHTD 60

Query: 61 DELRTAVTQLTALSSVDSVCGSGAPAAH 89
          DELRTAVTQLTALSSVDSVCGSGAPAAH
Sbjct: 61 DELRTAVTQLTALSSVDSVCGSGAPAAH 88

[Close]
BLAST of CsaV3_2G004810 vs. TrEMBL
Match: tr|A0A0A0LGA0|A0A0A0LGA0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G015340 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.6e-28
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MKKKIRMRRPKLLVEESIEEIEVVMCRKMFYFKGERDAAXXXXXXXXXXXXXXXXXPHTD 60
          MKKKIRMRRPKLLVEESIEEIEVVMCRKMFYFKGERDAAXXXXXXXXXXXXXXXXXPHTD
Sbjct: 1  MKKKIRMRRPKLLVEESIEEIEVVMCRKMFYFKGERDAAXXXXXXXXXXXXXXXXXPHTD 60

Query: 61 DELRTAVTQLTALSSVDSVCGSGAPAAH 89
          DELRTAVTQLTALSSVDSVCGSGAPAAH
Sbjct: 61 DELRTAVTQLTALSSVDSVCGSGAPAAH 88

The following BLAST results are available for this feature:
BLAST of CsaV3_2G004810 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60858.15.4e-28100.00hypothetical protein Csa_2G015340 [Cucumis sativus][more]
BLAST of CsaV3_2G004810 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G004810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G004810 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LGA0|A0A0A0LGA0_CUCSA3.6e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G015340 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G004810.1CsaV3_2G004810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G004810Silver-seed gourdcarcucB0330
CsaV3_2G004810Silver-seed gourdcarcucB0754
CsaV3_2G004810Cucurbita maxima (Rimu)cmacucB0934
CsaV3_2G004810Cucumber (Gy14) v2cgybcucB064
CsaV3_2G004810Cucumber (Gy14) v1cgycucB097
CsaV3_2G004810Cucurbita maxima (Rimu)cmacucB0202
CsaV3_2G004810Cucurbita moschata (Rifu)cmocucB0185
CsaV3_2G004810Cucurbita moschata (Rifu)cmocucB0924
CsaV3_2G004810Cucurbita pepo (Zucchini)cpecucB0010
CsaV3_2G004810Cucurbita pepo (Zucchini)cpecucB0114
CsaV3_2G004810Cucurbita pepo (Zucchini)cpecucB1014
CsaV3_2G004810Wild cucumber (PI 183967)cpicucB080
CsaV3_2G004810Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G004810Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G004810Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G004810Watermelon (Charleston Gray)cucwcgB137
CsaV3_2G004810Watermelon (97103) v1cucwmB159
CsaV3_2G004810Watermelon (97103) v2cucwmbB123
CsaV3_2G004810Wax gourdcucwgoB144