CsaV3_2G004060 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G004060
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTMV resistance protein N-like
Locationchr2 : 2097441 .. 2097638 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TACAATGGAATGTAAGTTGCTTGAAGAAATTCCAAAGCTTCCAGAAGGAGTAGTTCGTATGAATGTTGGAGGGTGCATATCATTTGTCAGATTTCCTGACAACATTGTTGATTTTATATCCTGTGATGATAATGTGGTGTGTATTCTCATGACCTCATCTCTCATGTAATTCGTAATTCTATGTGCTTTGTTAATTAA

mRNA sequence

ACAATGGAATGTAAGTTGCTTGAAGAAATTCCAAAGCTTCCAGAAGGAGTAGTTCGTATGAATGTTGGAGGGTGCATATCATTTGTCAGATTTCCTGACAACATTGTTGATTTTATATCCTGTGATGATAATGTGGTGTGTATTCTCATGACCTCATCTCTCATGTA

Coding sequence (CDS)

ACAATGGAATGTAAGTTGCTTGAAGAAATTCCAAAGCTTCCAGAAGGAGTAGTTCGTATGAATGTTGGAGGGTGCATATCATTTGTCAGATTTCCTGACAACATTGTTGATTTTATATCCTGTGATGATAATGTGGTGTGTATTCTCATGACCTCATCTCTCATGTA

Protein sequence

TMECKLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDNVVCILMTSSLMX
Homology
[Close]
BLAST of CsaV3_2G004060 vs. NCBI nr
Match: XP_011650100.1 (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 5   KLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDNVVCILMTSSLM 56
           KLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDNVVCILMTSSLM
Sbjct: 513 KLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDNVVCILMTSSLM 563

[Close]
BLAST of CsaV3_2G004060 vs. NCBI nr
Match: XP_011649005.1 (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis sativus] >KGN61274.1 hypothetical protein Csa_2G075330 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-12
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 1   TMECKLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDNV 46
           TMECKLLEEIPK+P+GVV MN  GCIS  RFPDNI DFI CDDNV
Sbjct: 856 TMECKLLEEIPKVPKGVVYMNAIGCISLTRFPDNIPDFICCDDNV 900

[Close]
BLAST of CsaV3_2G004060 vs. NCBI nr
Match: XP_016901554.1 (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 5.5e-10
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1   TMECKLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDN 45
           T +CKLLEEIPK+P+G V MN  GCI   RFPDNI+DFISC DN
Sbjct: 855 TRDCKLLEEIPKVPKGAVTMNASGCILLARFPDNILDFISCYDN 898

[Close]
BLAST of CsaV3_2G004060 vs. NCBI nr
Match: XP_016901487.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 1   TMECKLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISC 42
           T +CKLLEEIPK+PEG V MN  GC+S  RFPDNI DFISC
Sbjct: 774 TSDCKLLEEIPKIPEGAVTMNASGCVSLARFPDNIPDFISC 814

[Close]
BLAST of CsaV3_2G004060 vs. NCBI nr
Match: XP_008465624.1 (PREDICTED: TMV resistance protein N-like, partial [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-09
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 1   TMECKLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDNVV 47
           T+ CKLLEEIP +PEGVV M+ GGC+S  RFP+NI  FISC DN V
Sbjct: 314 TIGCKLLEEIPNIPEGVVCMDAGGCVSLARFPNNIHSFISCHDNNV 359

[Close]
BLAST of CsaV3_2G004060 vs. TrEMBL
Match: tr|A0A0A0LJK8|A0A0A0LJK8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G075330 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-12
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 1   TMECKLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDNV 46
           TMECKLLEEIPK+P+GVV MN  GCIS  RFPDNI DFI CDDNV
Sbjct: 856 TMECKLLEEIPKVPKGVVYMNAIGCISLTRFPDNIPDFICCDDNV 900

[Close]
BLAST of CsaV3_2G004060 vs. TrEMBL
Match: tr|A0A1S4E019|A0A1S4E019_CUCME (LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103495230 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-10
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1   TMECKLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDN 45
           T +CKLLEEIPK+P+G V MN  GCI   RFPDNI+DFISC DN
Sbjct: 855 TRDCKLLEEIPKVPKGAVTMNASGCILLARFPDNILDFISCYDN 898

[Close]
BLAST of CsaV3_2G004060 vs. TrEMBL
Match: tr|A0A1S4DZR7|A0A1S4DZR7_CUCME (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-10
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 1   TMECKLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISC 42
           T +CKLLEEIPK+PEG V MN  GC+S  RFPDNI DFISC
Sbjct: 774 TSDCKLLEEIPKIPEGAVTMNASGCVSLARFPDNIPDFISC 814

[Close]
BLAST of CsaV3_2G004060 vs. TrEMBL
Match: tr|A0A1S3CPA7|A0A1S3CPA7_CUCME (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103503265 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-09
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 1   TMECKLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDNVV 47
           T+ CKLLEEIP +PEGVV M+ GGC+S  RFP+NI  FISC DN V
Sbjct: 314 TIGCKLLEEIPNIPEGVVCMDAGGCVSLARFPNNIHSFISCHDNNV 359

[Close]
BLAST of CsaV3_2G004060 vs. TrEMBL
Match: tr|E7CHD4|E7CHD4_CUCSA (Putative NBS-LRR protein OS=Cucumis sativus OX=3659 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1   TMECKLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDNV 46
           TM+C+LLEEI K+PEGV+ M+  G IS  RFP+N+ DF+SCDD+V
Sbjct: 637 TMDCELLEEISKVPEGVICMSAAGSISLARFPNNLADFMSCDDSV 681

The following BLAST results are available for this feature:
BLAST of CsaV3_2G004060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650100.12.6e-20100.00PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus][more]
XP_011649005.13.4e-1280.00PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis sativus] >KGN61274.... [more]
XP_016901554.15.5e-1070.45PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo][more]
XP_016901487.11.2e-0973.17PREDICTED: TMV resistance protein N-like [Cucumis melo][more]
XP_008465624.13.6e-0967.39PREDICTED: TMV resistance protein N-like, partial [Cucumis melo][more]
BLAST of CsaV3_2G004060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G004060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G004060 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJK8|A0A0A0LJK8_CUCSA2.3e-1280.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G075330 PE=4 SV=1[more]
tr|A0A1S4E019|A0A1S4E019_CUCME3.6e-1070.45LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A1S4DZR7|A0A1S4DZR7_CUCME8.1e-1073.17TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1[more]
tr|A0A1S3CPA7|A0A1S3CPA7_CUCME2.4e-0967.39TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103503265 PE=4 SV=1[more]
tr|E7CHD4|E7CHD4_CUCSA1.2e-0862.22Putative NBS-LRR protein OS=Cucumis sativus OX=3659 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G004060.1CsaV3_2G004060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G004060CSPI02G02930Wild cucumber (PI 183967)cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G004060Cucumber (Chinese Long) v3cuccucB072
CsaV3_2G004060Cucumber (Chinese Long) v3cuccucB103
CsaV3_2G004060Silver-seed gourdcarcucB0754
CsaV3_2G004060Silver-seed gourdcarcucB1120
CsaV3_2G004060Cucurbita maxima (Rimu)cmacucB0934
CsaV3_2G004060Cucumber (Gy14) v2cgybcucB064
CsaV3_2G004060Cucumber (Gy14) v2cgybcucB321
CsaV3_2G004060Cucumber (Gy14) v1cgycucB190
CsaV3_2G004060Cucurbita maxima (Rimu)cmacucB0131
CsaV3_2G004060Cucurbita maxima (Rimu)cmacucB0202
CsaV3_2G004060Cucurbita maxima (Rimu)cmacucB0278
CsaV3_2G004060Cucurbita maxima (Rimu)cmacucB0700
CsaV3_2G004060Cucurbita maxima (Rimu)cmacucB1044
CsaV3_2G004060Cucurbita moschata (Rifu)cmocucB0118
CsaV3_2G004060Cucurbita moschata (Rifu)cmocucB0185
CsaV3_2G004060Cucurbita moschata (Rifu)cmocucB0269
CsaV3_2G004060Cucurbita moschata (Rifu)cmocucB0419
CsaV3_2G004060Cucurbita moschata (Rifu)cmocucB0686
CsaV3_2G004060Cucurbita moschata (Rifu)cmocucB0924
CsaV3_2G004060Cucurbita moschata (Rifu)cmocucB1027
CsaV3_2G004060Cucurbita pepo (Zucchini)cpecucB0005
CsaV3_2G004060Cucurbita pepo (Zucchini)cpecucB0007
CsaV3_2G004060Cucurbita pepo (Zucchini)cpecucB0114
CsaV3_2G004060Cucurbita pepo (Zucchini)cpecucB0378
CsaV3_2G004060Cucurbita pepo (Zucchini)cpecucB1014
CsaV3_2G004060Wild cucumber (PI 183967)cpicucB139
CsaV3_2G004060Wild cucumber (PI 183967)cpicucB389
CsaV3_2G004060Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G004060Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G004060Melon (DHL92) v3.5.1cucmeB148
CsaV3_2G004060Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G004060Melon (DHL92) v3.6.1cucmedB141
CsaV3_2G004060Watermelon (Charleston Gray)cucwcgB110
CsaV3_2G004060Watermelon (Charleston Gray)cucwcgB137
CsaV3_2G004060Watermelon (97103) v1cucwmB119
CsaV3_2G004060Watermelon (97103) v1cucwmB159
CsaV3_2G004060Watermelon (97103) v2cucwmbB123
CsaV3_2G004060Watermelon (97103) v2cucwmbB172
CsaV3_2G004060Wax gourdcucwgoB144
CsaV3_2G004060Wax gourdcucwgoB213