CsaV3_2G002280 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G002280
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat
Location	chr2 : 897841 .. 899592 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAATCTGAAATGGGTTTTACTAGATTCAATCAAAGATTGTAAGAACTTAAGGATCTTTAGACAAATTCATGCTCAACTGGTAACATCAGGATTAGTTTACGATGACTTCGTCACAAGCAAAGTGATGGAATTCTTTGCCAATTTTGTTGAGTATGGTGACTATGCCTGTGATTATTTAGAACAAGGCAACACGCGCTTAGGTTCATTTCCATTCAACTCACTGATTAATGGGTATGTTGGTGGTGAGTTTCCACAAATGGCGGTTTCAGTTTATAGAAGGATGGTGAGAGATGGGTTTGTGCCCGATATGTTTACTTTTCCAGTCCTTTTGAAAGCGTGCTCTAACTTTTCAGGGAGCAGAGAAGGCAGACAAGTTCATGGCGTGGTGGTTAAATTGGGGCTTTTGGCTGATCATTATGTGCAAAACTCACTAATTCGTTGCTATGGAGCTTGTGGGGATTTTTCTTGCGCAGGTAAGGTGTTTGATGAAATGCTTGTTCGAGATGTTGTTTCGTGGAACAGTTTGATATCTGGGTTCATGAAGGCGGGGCATTTTGACGAGGCCATTTCTGTGTTTTTCAGGATGGATGTGGAGCCAAGCATGACAACTTTAGTCAGTGTGCTTGCTGCATGTGCAAGAAATGGAGACCTGTGTACGGGGAAGGGAATTCATGGTGTGATCGAGAGGAGGTTTAAGGTGAATTTAGTACTAGGAAATGCAATGCTAGATATGTATGTAAAGAATGGATGTTTTTATGAAGCTAAGAACATATTTGACGAGCTCCCAACAAGAGATATTGTGTCTTGGACTATCATGATCACAGGATTGGTGCAGAGTGACCATCCAAAACAGTCCTTGGAACTGTTTTCAATGATGCGAACCTTGGGTATTAGCCCTGATGCGATTATTTTAACTAGTGTTCTCTCTGCTTGTGCTAGCCTAGGAACTCTTGACTTCGGGACATGGGTCCACGAGTACATAAACCAAAGAGGAATCAAATGGGATATCCATATTGGAACTGCCATTGTGGACATGTACGCCAAATGTGGATGTATCGAGATGGCACTGAAAATCTTTTACAGTATGTCTCAAAGAAACACCTTCACTTGGAATGCTTTGTTATGTGGTCTAGCAATGCATGGACTTGTGCACGAAGCATTAAATCTTTTTGAAGTAATGATAATATCTGGTGTCAAGCCTAACGAGATAACATTTCTAGCGATTTTGACAGCTTGCTGTCATTGTGGTCTGGTCGATGAAGGGCGCAAATATTTTGATAACATGAGTAAACTTTATAATTTGTTGCCTAAGTTGGAGCATTATGGATGTATGATTGATTTGTTCTGTCGAGCTGGACTCTTGGAAGAAGCAGTGGAGTTGGCAAGGACCATGCCAATGAAGCCTGATGTGCTTATCTGGGGACTGCTACTAAATGCTTGCACAACTGTTGGAAACATTGAGCTTTCTCATCGCATACAGGATTATATCTTGGAACTTGATCATGACGATAGTGGAGTCTTCGTGCTGCTGTCTAATATATCTGCTATTAATCAGAGATGGTCCAATGTGACACGATTAAGGAGGTTGATGAAAGATAGAGGTGTGAGAAAAGCACCTGGATCAAGTGTCATTGAGGTAGATGGTAAGGCTCACGAGTTTGTGGTTGGAGATATTAGCCACCTCCAAACTGAAGAAATTTACAAAGTGTTAAACCTCATTAACTCTGTTTACCATGAAAGCCATTAG

mRNA sequence

ATGTTCAATCTGAAATGGGTTTTACTAGATTCAATCAAAGATTGTAAGAACTTAAGGATCTTTAGACAAATTCATGCTCAACTGGTAACATCAGGATTAGTTTACGATGACTTCGTCACAAGCAAAGTGATGGAATTCTTTGCCAATTTTGTTGAGTATGGTGACTATGCCTGTGATTATTTAGAACAAGGCAACACGCGCTTAGGTTCATTTCCATTCAACTCACTGATTAATGGGTATGTTGGTGGTGAGTTTCCACAAATGGCGGTTTCAGTTTATAGAAGGATGGTGAGAGATGGGTTTGTGCCCGATATGTTTACTTTTCCAGTCCTTTTGAAAGCGTGCTCTAACTTTTCAGGGAGCAGAGAAGGCAGACAAGTTCATGGCGTGGTGGTTAAATTGGGGCTTTTGGCTGATCATTATGTGCAAAACTCACTAATTCGTTGCTATGGAGCTTGTGGGGATTTTTCTTGCGCAGGTAAGGTGTTTGATGAAATGCTTGTTCGAGATGTTGTTTCGTGGAACAGTTTGATATCTGGGTTCATGAAGGCGGGGCATTTTGACGAGGCCATTTCTGTGTTTTTCAGGATGGATGTGGAGCCAAGCATGACAACTTTAGTCAGTGTGCTTGCTGCATGTGCAAGAAATGGAGACCTGTGTACGGGGAAGGGAATTCATGGTGTGATCGAGAGGAGGTTTAAGAGATGGTCCAATGTGACACGATTAAGGAGGTTGATGAAAGATAGAGGTGTGAGAAAAGCACCTGGATCAAGTGTCATTGAGGTAGATGGTAAGGCTCACGAGTTTGTGGTTGGAGATATTAGCCACCTCCAAACTGAAGAAATTTACAAAGTGTTAAACCTCATTAACTCTGTTTACCATGAAAGCCATTAG

Coding sequence (CDS)

ATGTTCAATCTGAAATGGGTTTTACTAGATTCAATCAAAGATTGTAAGAACTTAAGGATCTTTAGACAAATTCATGCTCAACTGGTAACATCAGGATTAGTTTACGATGACTTCGTCACAAGCAAAGTGATGGAATTCTTTGCCAATTTTGTTGAGTATGGTGACTATGCCTGTGATTATTTAGAACAAGGCAACACGCGCTTAGGTTCATTTCCATTCAACTCACTGATTAATGGGTATGTTGGTGGTGAGTTTCCACAAATGGCGGTTTCAGTTTATAGAAGGATGGTGAGAGATGGGTTTGTGCCCGATATGTTTACTTTTCCAGTCCTTTTGAAAGCGTGCTCTAACTTTTCAGGGAGCAGAGAAGGCAGACAAGTTCATGGCGTGGTGGTTAAATTGGGGCTTTTGGCTGATCATTATGTGCAAAACTCACTAATTCGTTGCTATGGAGCTTGTGGGGATTTTTCTTGCGCAGGTAAGGTGTTTGATGAAATGCTTGTTCGAGATGTTGTTTCGTGGAACAGTTTGATATCTGGGTTCATGAAGGCGGGGCATTTTGACGAGGCCATTTCTGTGTTTTTCAGGATGGATGTGGAGCCAAGCATGACAACTTTAGTCAGTGTGCTTGCTGCATGTGCAAGAAATGGAGACCTGTGTACGGGGAAGGGAATTCATGGTGTGATCGAGAGGAGGTTTAAGAGATGGTCCAATGTGACACGATTAAGGAGGTTGATGAAAGATAGAGGTGTGAGAAAAGCACCTGGATCAAGTGTCATTGAGGTAGATGGTAAGGCTCACGAGTTTGTGGTTGGAGATATTAGCCACCTCCAAACTGAAGAAATTTACAAAGTGTTAAACCTCATTAACTCTGTTTACCATGAAAGCCATTAG

Protein sequence

MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKRWSNVTRLRRLMKDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLNLINSVYHESH

Homology

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BLAST of CsaV3_2G002280 vs. NCBI nr
Match: KGN60620.1 (hypothetical protein Csa_2G004700 [Cucumis sativus])

HSP 1 Score: 497.3 bits (1279), Expect = 3.7e-137
Identity = 297/583 (50.94%), Postives = 297/583 (50.94%), Query Frame = 0


Query: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY 60
           MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY
Sbjct: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY 60

Query: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120
           LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG
Sbjct: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120

Query: 121 SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG 180
           SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG
Sbjct: 121 SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG 180

Query: 181 FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFK------ 240
           FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFK      
Sbjct: 181 FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLG 240

Query: 241 ------------------------------------------------------------ 298
                                                                       
Sbjct: 241 NAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGIS 300

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BLAST of CsaV3_2G002280 vs. NCBI nr
Match: XP_008458315.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucumis melo])

HSP 1 Score: 480.7 bits (1236), Expect = 3.6e-132
Identity = 289/583 (49.57%), Postives = 293/583 (50.26%), Query Frame = 0


Query: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY 60
           MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY
Sbjct: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY 60

Query: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120
           LEQGNTRLGSFPFNSLINGYVGGEFPQ AVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG
Sbjct: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQTAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120

Query: 121 SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG 180
           SREGRQVHGVVVKLGLLAD YVQNSLIRCYGACGD SCAGKVFDEM+VRDVVSWNSLISG
Sbjct: 121 SREGRQVHGVVVKLGLLADLYVQNSLIRCYGACGDLSCAGKVFDEMVVRDVVSWNSLISG 180

Query: 181 FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFK------ 240
           FMKAGHFDEAISVFFRMDVEPS+ TLVSVLAACARNG+LCTGKGIHGVIERRFK      
Sbjct: 181 FMKAGHFDEAISVFFRMDVEPSIATLVSVLAACARNGNLCTGKGIHGVIERRFKVNLVLG 240

Query: 241 ------------------------------------------------------------ 298
                                                                       
Sbjct: 241 NAMLDMYVKNGCFYEAKKMFDELPTRDIVSWTIMITGLVQSDHPKESLELFSMMRTLGIS 300

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BLAST of CsaV3_2G002280 vs. NCBI nr
Match: XP_022968019.1 (pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucurbita maxima])

HSP 1 Score: 438.0 bits (1125), Expect = 2.6e-119
Identity = 206/234 (88.03%), Postives = 223/234 (95.30%), Query Frame = 0


Query: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY 60
           MFNLKWVLLDSIKDCKNLRIF++IHAQLVTSGLVYDDFVT+KV+EFFANFVE+GDYACDY
Sbjct: 1   MFNLKWVLLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDY 60

Query: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120
           L+Q NTRLGSFPFNSLINGY GGEFPQMAVSVYRRM RDGFVPD+FTFPVL KACSNFSG
Sbjct: 61  LKQVNTRLGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSG 120

Query: 121 SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG 180
           SREGRQVHGVV+KLG+L+D +VQNSL+RCYGAC DFSCAGKVFDEMLVRDVVSWNSLISG
Sbjct: 121 SREGRQVHGVVIKLGILSDLFVQNSLVRCYGACEDFSCAGKVFDEMLVRDVVSWNSLISG 180

Query: 181 FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFK 235
           FMKAG FD+AIS+FFRMDVEPS+ TLVSVLAACAR GDL  GKGIHG+I+RRFK
Sbjct: 181 FMKAGRFDDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGMIQRRFK 234

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BLAST of CsaV3_2G002280 vs. NCBI nr
Match: XP_022945046.1 (pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucurbita moschata])

HSP 1 Score: 429.5 bits (1103), Expect = 9.4e-117
Identity = 203/234 (86.75%), Postives = 220/234 (94.02%), Query Frame = 0


Query: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY 60
           MFNLKWVLLDSIKDCKNLRIF++IHAQLV SGLVYDDFVT+KV+EFFANFVE+GDYACDY
Sbjct: 1   MFNLKWVLLDSIKDCKNLRIFKKIHAQLVASGLVYDDFVTNKVVEFFANFVEFGDYACDY 60

Query: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120
           L+Q N RLGSFPFNSLINGY GGEFPQMAVSVYRRM RDGFVPD+FTFPVL KACSNFSG
Sbjct: 61  LKQVNIRLGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSG 120

Query: 121 SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG 180
           SREGRQVHGVVVKLG+L+D +VQNSL+ CYGAC DFSCAGKVFDEMLVRDVVSWNSLISG
Sbjct: 121 SREGRQVHGVVVKLGILSDLFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISG 180

Query: 181 FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFK 235
           FMKAG FD+AIS+FFRMDVEPS+ TLVSVLAACAR G+L  GKGIHG+I+RRFK
Sbjct: 181 FMKAGRFDDAISLFFRMDVEPSVATLVSVLAACARKGELYMGKGIHGMIQRRFK 234

HSP 2 Score: 140.2 bits (352), Expect = 1.1e-29
Identity = 95/285 (33.33%), Postives = 146/285 (51.23%), Query Frame = 0


Query: 24  IHAQLVTSGLVYDDFVTSKVMEFFA--NFVEYGDYACDYLEQGNTRLGSFPFNSLINGYV 83
           +H  +   G+ +D  + + +++ +A    VE      + + Q NT    F +N+L+ G  
Sbjct: 325 VHEYIDQRGIKWDIHIGTAIVDMYAKCGCVEMARQIFNNMPQRNT----FTWNALLCGLA 384

Query: 84  GGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHY 143
                  A+ ++  M+  G  P+  TF  +L AC +     EGR+         + +  Y
Sbjct: 385 MHGLAHEALFLFEVMIISGVKPNEVTFLAILTACCHSGLVDEGRKYFD-----NMSSQTY 444

Query: 144 VQNSLIRCYGACGDFSCAGKVFDEM--LVR------DVVSWNSLISGFMKAGHFDEAISV 203
             +  +  YG   D  C   + +E   LVR      DV+ W  L++     G+ + +  +
Sbjct: 445 NLSPKLEHYGCMIDLLCRAGLLEEAVELVRTMPMKPDVLIWGVLLNACKTVGNIELSQHI 504

Query: 204 -FFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKRWSNVTRLRRLMKDRGVR 263
             + ++++   + +  +L+  +   +                RWSNVTRLRRLMKDRGV+
Sbjct: 505 QEYILELDTEDSGVFVLLSNISATNE----------------RWSNVTRLRRLMKDRGVK 564

Query: 264 KAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLNLINSVYHESH 298
           K+PGSSVIEVDGKAHEFV GDIS+L+ EEIYKVL LINSV HESH
Sbjct: 565 KSPGSSVIEVDGKAHEFVAGDISNLEIEEIYKVLTLINSVLHESH 584

[Close]

BLAST of CsaV3_2G002280 vs. NCBI nr
Match: XP_023541467.1 (pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419.5 bits (1077), Expect = 9.7e-114
Identity = 199/227 (87.67%), Postives = 215/227 (94.71%), Query Frame = 0


Query: 8   LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTR 67
           LLDSIKDCKNLRIF++IHAQLVTSGLVYDDFVT+KV+EFFANFVE+GDYACDYL+Q NTR
Sbjct: 3   LLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDYLKQLNTR 62

Query: 68  LGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQV 127
           LGSFPFNSLINGY GGEFPQMAVSVYRRM RDGFVPD+FTFPVL KACSNFSGSREGRQV
Sbjct: 63  LGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQV 122

Query: 128 HGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHF 187
           HGVVVKLG+L+D +VQNSL+ CYGAC DFSCAGKVFDEMLVRDVVSWNSLISGFMKAG F
Sbjct: 123 HGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRF 182

Query: 188 DEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFK 235
           D+AIS+FFRMDVEPS+ TLVSVLAACAR GDL  GKGIHG+I+RRFK
Sbjct: 183 DDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGMIQRRFK 229

HSP 2 Score: 141.7 bits (356), Expect = 3.9e-30
Identity = 95/285 (33.33%), Postives = 146/285 (51.23%), Query Frame = 0


Query: 24  IHAQLVTSGLVYDDFVTSKVMEFFA--NFVEYGDYACDYLEQGNTRLGSFPFNSLINGYV 83
           +H  +   G+ +D  + + +++ +A    VE      + + Q NT    F +N+ + G  
Sbjct: 320 VHEYIDQRGIKWDIHIGTAIVDMYAKCGCVEMARQIFNNMPQRNT----FTWNAWLCGLA 379

Query: 84  GGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHY 143
                  A+ ++  M+  G  P+  TF  +L AC +     EGR+         + +  Y
Sbjct: 380 MHGLAHEALYLFEVMIISGVKPNEVTFLAILTACCHSGLVDEGRKYFD-----NMSSQRY 439

Query: 144 VQNSLIRCYGACGDFSCAGKVFDEM--LVR------DVVSWNSLISGFMKAGHFDEAISV 203
             +  +  YG   D  C   + +E   LVR      DV+ W  L++     G+ + +  +
Sbjct: 440 NLSPKLEHYGCMIDLFCRAGLLEEAVELVRTMPMKPDVLIWGVLLNACKTVGNVELSQHI 499

Query: 204 -FFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKRWSNVTRLRRLMKDRGVR 263
             + ++++P  + +  +L+  +   +                RWSNVTRLRRLMKDRGV+
Sbjct: 500 QEYILELDPEDSGVFVLLSNISATNE----------------RWSNVTRLRRLMKDRGVK 559

Query: 264 KAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLNLINSVYHESH 298
           K+PGSSVIEVDGKAHEFV GDIS L+ EEIYKVL LINSV+HESH
Sbjct: 560 KSPGSSVIEVDGKAHEFVAGDISTLEIEEIYKVLTLINSVFHESH 579

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BLAST of CsaV3_2G002280 vs. TAIR10
Match: AT4G38010.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 225.3 bits (573), Expect = 4.9e-59
Identity = 106/228 (46.49%), Postives = 147/228 (64.47%), Query Frame = 0


Query: 5   KWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQG 64
           K VLL+ I  C +LR+F+QI  QL+T  L+ DD + +KV+ F     ++  Y+   L   
Sbjct: 6   KSVLLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSI 65

Query: 65  NTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREG 124
            + L SF +N+L++ Y   + P++ +  Y+  V +GF PDMFTFP + KAC  FSG REG
Sbjct: 66  RSVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREG 125

Query: 125 RQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKA 184
           +Q+HG+V K+G   D YVQNSL+  YG CG+   A KVF EM VRDVVSW  +I+GF + 
Sbjct: 126 KQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRT 185

Query: 185 GHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERR 233
           G + EA+  F +MDVEP++ T V VL +  R G L  GKGIHG+I +R
Sbjct: 186 GLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKR 233

HSP 2 Score: 68.9 bits (167), Expect = 5.9e-12
Identity = 61/259 (23.55%), Postives = 103/259 (39.77%), Query Frame = 0


Query: 22  RQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLE------QGNTRLGSFPFNS 81
           R +H  ++T+G+ +D  + + +++ +A         C Y+E       G      F +N+
Sbjct: 326 RWVHEYILTAGIKWDTHIGTAIVDMYAK--------CGYIETALEIFNGIRSKNVFTWNA 385

Query: 82  LINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLG 141
           L+ G         ++  +  MV+ GF P++ TF   L AC +     EGR+         
Sbjct: 386 LLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFH-----K 445

Query: 142 LLADHYVQNSLIRCYGACGDFSCAGKVFDEML--------VRDVVSWNSLISGFMKAGHF 201
           + +  Y     +  YG   D  C   + DE L          DV    +++S     G  
Sbjct: 446 MKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRGTL 505

Query: 202 DEAISVFFR--MDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRF---KRWSNVTRL 261
            E         +D+E                       G++ ++   F   +RW +V R+
Sbjct: 506 MELPKEILDSFLDIE-------------------FEDSGVYVLLSNIFAANRRWDDVARI 552

[Close]

BLAST of CsaV3_2G002280 vs. TAIR10
Match: AT3G22690.1 (Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885))

HSP 1 Score: 157.9 bits (398), Expect = 9.6e-39
Identity = 83/228 (36.40%), Postives = 122/228 (53.51%), Query Frame = 0


Query: 11  SIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYG-----DYACDYLEQGN 70
           S+K+CK +   +  H  L   GL  D    S + +  A   E G      +A +  E   
Sbjct: 38  SLKNCKTIDELKMFHRSLTKQGLDND---VSTITKLVARSCELGTRESLSFAKEVFENSE 97

Query: 71  TRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGR 130
           +    F +NSLI GY        A+ ++ RM+  G  PD +TFP  L AC+       G 
Sbjct: 98  SYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGI 157

Query: 131 QVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAG 190
           Q+HG++VK+G   D +VQNSL+  Y  CG+   A KVFDEM  R+VVSW S+I G+ +  
Sbjct: 158 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 217

Query: 191 HFDEAISVFFRM----DVEPSMTTLVSVLAACARNGDLCTGKGIHGVI 230
              +A+ +FFRM    +V P+  T+V V++ACA+  DL TG+ ++  I
Sbjct: 218 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI 262

[Close]

BLAST of CsaV3_2G002280 vs. TAIR10
Match: AT2G22410.1 (SLOW GROWTH 1)

HSP 1 Score: 148.3 bits (373), Expect = 7.6e-36
Identity = 84/230 (36.52%), Postives = 133/230 (57.83%), Query Frame = 0


Query: 8   LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFA-NFVEYGDYACDYLEQGNT 67
           LL  ++ CK L   +QI AQ++ +GL+ D F +S+++ F A +   Y DY+   L +G  
Sbjct: 56  LLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKIL-KGIE 115

Query: 68  RLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFV---PDMFTFPVLLKACSNFSGSRE 127
               F +N  I G+   E P+ +  +Y++M+R G     PD FT+PVL K C++   S  
Sbjct: 116 NPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSL 175

Query: 128 GRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMK 187
           G  + G V+KL L    +V N+ I  + +CGD   A KVFDE  VRD+VSWN LI+G+ K
Sbjct: 176 GHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKK 235

Query: 188 AGHFDEAISVFFRMD---VEPSMTTLVSVLAACARNGDLCTGKGIHGVIE 231
            G  ++AI V+  M+   V+P   T++ ++++C+  GDL  GK  +  ++
Sbjct: 236 IGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVK 284

HSP 2 Score: 75.9 bits (185), Expect = 4.8e-14
Identity = 59/225 (26.22%), Postives = 99/225 (44.00%), Query Frame = 0


Query: 70  SFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHG 129
           S  + ++I G         A+S +  M+  G  PD  TF  LL AC +    + GR    
Sbjct: 455 SLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFS 514

Query: 130 VV---VKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEM-LVRDVVSWNSLISGFMKAG 189
            +     L     HY  + ++   G  G    A ++ + M +  D   W +L+ G    G
Sbjct: 515 QMKSRFNLNPQLKHY--SIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHG 574

Query: 190 HFDEAISVFFR-MDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKRWSNVTRLRR 249
           + +       + ++++PS + +  +L             G++G        W +  R RR
Sbjct: 575 NVELGEKAAKKLLELDPSDSGIYVLL------------DGMYG----EANMWEDAKRARR 634

Query: 250 LMKDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLNLI 290
           +M +RGV K PG S IEV+G   EF+V D S  ++E+IY  L+ +
Sbjct: 635 MMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCL 661

[Close]

BLAST of CsaV3_2G002280 vs. TAIR10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-35
Identity = 84/227 (37.00%), Postives = 125/227 (55.07%), Query Frame = 0


Query: 12  IKDCKNLRIFRQIHAQLVTSGLVY-DDFVTSKVMEFFAN--FVEYGDYACDYLEQGNTRL 71
           +K C N+  F+Q+HA+ +   L Y   F  S V+   A+  +    +YA   + +G    
Sbjct: 37  LKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAAS-IFRGIDDP 96

Query: 72  GSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVH 131
            +F FN++I GYV     + A+  Y  M++ G  PD FT+P LLKAC+     REG+Q+H
Sbjct: 97  CTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIH 156

Query: 132 GVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFD 191
           G V KLGL AD +VQNSLI  YG CG+   +  VF+++  +   SW+S++S     G + 
Sbjct: 157 GQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWS 216

Query: 192 EAISVFFRMDVEPSM----TTLVSVLAACARNGDLCTGKGIHGVIER 232
           E + +F  M  E ++    + +VS L ACA  G L  G  IHG + R
Sbjct: 217 ECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLR 262

HSP 2 Score: 79.7 bits (195), Expect = 3.3e-15
Identity = 56/233 (24.03%), Postives = 111/233 (47.64%), Query Frame = 0


Query: 60  YLEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFS 119
           ++ Q   +  +  ++++I+G       + A+ ++ +M+++G  PD   +  +L ACS+  
Sbjct: 290 HIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSG 349

Query: 120 GSREGRQVHGVVVKLGLL---ADHYVQNSLIRCYGACGDFSCAGKVFDEM-LVRDVVSWN 179
             +EGR+V   ++K G +   A+HY    L+   G  G    A +    + + ++ V W 
Sbjct: 350 LVKEGRRVFAEMLKEGKVEPTAEHY--GCLVDLLGRAGLLEEALETIQSIPIEKNDVIWR 409

Query: 180 SLISGFMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARN-GDLCTGKGIHGVIERRFK 239
           + +S                R ++E        +L   + N GD      ++     + +
Sbjct: 410 TFLS------------QCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYS----QGQ 469

Query: 240 RWSNVTRLRRLMKDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLN 288
            W +V R R  +  +G+++ PG S++E+ GK H FV  D SH + +EIYK+L+
Sbjct: 470 MWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLH 504

[Close]

BLAST of CsaV3_2G002280 vs. TAIR10
Match: AT3G05240.1 (mitochondrial editing factor 19)

HSP 1 Score: 142.9 bits (359), Expect = 3.2e-34
Identity = 77/228 (33.77%), Postives = 123/228 (53.95%), Query Frame = 0


Query: 8   LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGD--YACDYLEQGN 67
           +L  +++C++L    Q+H  ++ S ++ +    S++++F     E  +  YA    E  +
Sbjct: 9   ILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESID 68

Query: 68  TRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGR 127
                + +NS+I GY     P  A+  Y+ M+R G+ PD FTFP +LKACS     + G 
Sbjct: 69  CP-SVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 128

Query: 128 QVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAG 187
            VHG VVK G   + YV   L+  Y  CG+ +   +VF+++   +VV+W SLISGF+   
Sbjct: 129 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNN 188

Query: 188 HFDEAISVFFRMD---VEPSMTTLVSVLAACARNGDLCTGKGIHGVIE 231
            F +AI  F  M    V+ + T +V +L AC R  D+ TGK  HG ++
Sbjct: 189 RFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQ 235

[Close]

BLAST of CsaV3_2G002280 vs. Swiss-Prot
Match: sp|Q9SZK1|PP355_ARATH (Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E45 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 8.8e-58
Identity = 106/228 (46.49%), Postives = 147/228 (64.47%), Query Frame = 0


Query: 5   KWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQG 64
           K VLL+ I  C +LR+F+QI  QL+T  L+ DD + +KV+ F     ++  Y+   L   
Sbjct: 6   KSVLLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSI 65

Query: 65  NTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREG 124
            + L SF +N+L++ Y   + P++ +  Y+  V +GF PDMFTFP + KAC  FSG REG
Sbjct: 66  RSVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREG 125

Query: 125 RQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKA 184
           +Q+HG+V K+G   D YVQNSL+  YG CG+   A KVF EM VRDVVSW  +I+GF + 
Sbjct: 126 KQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRT 185

Query: 185 GHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERR 233
           G + EA+  F +MDVEP++ T V VL +  R G L  GKGIHG+I +R
Sbjct: 186 GLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKR 233

[Close]

BLAST of CsaV3_2G002280 vs. Swiss-Prot
Match: sp|Q9LUJ2|PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.7e-37
Identity = 83/228 (36.40%), Postives = 122/228 (53.51%), Query Frame = 0


Query: 11  SIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYG-----DYACDYLEQGN 70
           S+K+CK +   +  H  L   GL  D    S + +  A   E G      +A +  E   
Sbjct: 38  SLKNCKTIDELKMFHRSLTKQGLDND---VSTITKLVARSCELGTRESLSFAKEVFENSE 97

Query: 71  TRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGR 130
           +    F +NSLI GY        A+ ++ RM+  G  PD +TFP  L AC+       G 
Sbjct: 98  SYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGI 157

Query: 131 QVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAG 190
           Q+HG++VK+G   D +VQNSL+  Y  CG+   A KVFDEM  R+VVSW S+I G+ +  
Sbjct: 158 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 217

Query: 191 HFDEAISVFFRM----DVEPSMTTLVSVLAACARNGDLCTGKGIHGVI 230
              +A+ +FFRM    +V P+  T+V V++ACA+  DL TG+ ++  I
Sbjct: 218 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI 262

[Close]

BLAST of CsaV3_2G002280 vs. Swiss-Prot
Match: sp|Q9SJZ3|PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-34
Identity = 84/230 (36.52%), Postives = 133/230 (57.83%), Query Frame = 0


Query: 8   LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFA-NFVEYGDYACDYLEQGNT 67
           LL  ++ CK L   +QI AQ++ +GL+ D F +S+++ F A +   Y DY+   L +G  
Sbjct: 56  LLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKIL-KGIE 115

Query: 68  RLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFV---PDMFTFPVLLKACSNFSGSRE 127
               F +N  I G+   E P+ +  +Y++M+R G     PD FT+PVL K C++   S  
Sbjct: 116 NPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSL 175

Query: 128 GRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMK 187
           G  + G V+KL L    +V N+ I  + +CGD   A KVFDE  VRD+VSWN LI+G+ K
Sbjct: 176 GHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKK 235

Query: 188 AGHFDEAISVFFRMD---VEPSMTTLVSVLAACARNGDLCTGKGIHGVIE 231
            G  ++AI V+  M+   V+P   T++ ++++C+  GDL  GK  +  ++
Sbjct: 236 IGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVK 284

HSP 2 Score: 75.9 bits (185), Expect = 8.6e-13
Identity = 59/225 (26.22%), Postives = 99/225 (44.00%), Query Frame = 0


Query: 70  SFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHG 129
           S  + ++I G         A+S +  M+  G  PD  TF  LL AC +    + GR    
Sbjct: 455 SLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFS 514

Query: 130 VV---VKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEM-LVRDVVSWNSLISGFMKAG 189
            +     L     HY  + ++   G  G    A ++ + M +  D   W +L+ G    G
Sbjct: 515 QMKSRFNLNPQLKHY--SIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHG 574

Query: 190 HFDEAISVFFR-MDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKRWSNVTRLRR 249
           + +       + ++++PS + +  +L             G++G        W +  R RR
Sbjct: 575 NVELGEKAAKKLLELDPSDSGIYVLL------------DGMYG----EANMWEDAKRARR 634

Query: 250 LMKDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLNLI 290
           +M +RGV K PG S IEV+G   EF+V D S  ++E+IY  L+ +
Sbjct: 635 MMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCL 661

[Close]

BLAST of CsaV3_2G002280 vs. Swiss-Prot
Match: sp|Q9C6T2|PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.1e-34
Identity = 84/227 (37.00%), Postives = 125/227 (55.07%), Query Frame = 0


Query: 12  IKDCKNLRIFRQIHAQLVTSGLVY-DDFVTSKVMEFFAN--FVEYGDYACDYLEQGNTRL 71
           +K C N+  F+Q+HA+ +   L Y   F  S V+   A+  +    +YA   + +G    
Sbjct: 37  LKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAAS-IFRGIDDP 96

Query: 72  GSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVH 131
            +F FN++I GYV     + A+  Y  M++ G  PD FT+P LLKAC+     REG+Q+H
Sbjct: 97  CTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIH 156

Query: 132 GVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFD 191
           G V KLGL AD +VQNSLI  YG CG+   +  VF+++  +   SW+S++S     G + 
Sbjct: 157 GQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWS 216

Query: 192 EAISVFFRMDVEPSM----TTLVSVLAACARNGDLCTGKGIHGVIER 232
           E + +F  M  E ++    + +VS L ACA  G L  G  IHG + R
Sbjct: 217 ECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLR 262

HSP 2 Score: 79.7 bits (195), Expect = 6.0e-14
Identity = 56/233 (24.03%), Postives = 111/233 (47.64%), Query Frame = 0


Query: 60  YLEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFS 119
           ++ Q   +  +  ++++I+G       + A+ ++ +M+++G  PD   +  +L ACS+  
Sbjct: 290 HIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSG 349

Query: 120 GSREGRQVHGVVVKLGLL---ADHYVQNSLIRCYGACGDFSCAGKVFDEM-LVRDVVSWN 179
             +EGR+V   ++K G +   A+HY    L+   G  G    A +    + + ++ V W 
Sbjct: 350 LVKEGRRVFAEMLKEGKVEPTAEHY--GCLVDLLGRAGLLEEALETIQSIPIEKNDVIWR 409

Query: 180 SLISGFMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARN-GDLCTGKGIHGVIERRFK 239
           + +S                R ++E        +L   + N GD      ++     + +
Sbjct: 410 TFLS------------QCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYS----QGQ 469

Query: 240 RWSNVTRLRRLMKDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLN 288
            W +V R R  +  +G+++ PG S++E+ GK H FV  D SH + +EIYK+L+
Sbjct: 470 MWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLH 504

[Close]

BLAST of CsaV3_2G002280 vs. Swiss-Prot
Match: sp|Q9MA95|PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 5.8e-33
Identity = 77/228 (33.77%), Postives = 123/228 (53.95%), Query Frame = 0


Query: 8   LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGD--YACDYLEQGN 67
           +L  +++C++L    Q+H  ++ S ++ +    S++++F     E  +  YA    E  +
Sbjct: 9   ILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESID 68

Query: 68  TRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGR 127
                + +NS+I GY     P  A+  Y+ M+R G+ PD FTFP +LKACS     + G 
Sbjct: 69  CP-SVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 128

Query: 128 QVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAG 187
            VHG VVK G   + YV   L+  Y  CG+ +   +VF+++   +VV+W SLISGF+   
Sbjct: 129 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNN 188

Query: 188 HFDEAISVFFRMD---VEPSMTTLVSVLAACARNGDLCTGKGIHGVIE 231
            F +AI  F  M    V+ + T +V +L AC R  D+ TGK  HG ++
Sbjct: 189 RFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQ 235

[Close]

BLAST of CsaV3_2G002280 vs. TrEMBL
Match: tr|A0A0A0LF19|A0A0A0LF19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004700 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 2.4e-137
Identity = 297/583 (50.94%), Postives = 297/583 (50.94%), Query Frame = 0


Query: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY 60
           MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY
Sbjct: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY 60

Query: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120
           LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG
Sbjct: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120

Query: 121 SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG 180
           SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG
Sbjct: 121 SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG 180

Query: 181 FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFK------ 240
           FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFK      
Sbjct: 181 FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLG 240

Query: 241 ------------------------------------------------------------ 298
                                                                       
Sbjct: 241 NAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGIS 300

[Close]

BLAST of CsaV3_2G002280 vs. TrEMBL
Match: tr|A0A1S3C7P6|A0A1S3C7P6_CUCME (pentatricopeptide repeat-containing protein At4g38010 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497763 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 2.4e-132
Identity = 289/583 (49.57%), Postives = 293/583 (50.26%), Query Frame = 0


Query: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY 60
           MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY
Sbjct: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY 60

Query: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120
           LEQGNTRLGSFPFNSLINGYVGGEFPQ AVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG
Sbjct: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQTAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120

Query: 121 SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG 180
           SREGRQVHGVVVKLGLLAD YVQNSLIRCYGACGD SCAGKVFDEM+VRDVVSWNSLISG
Sbjct: 121 SREGRQVHGVVVKLGLLADLYVQNSLIRCYGACGDLSCAGKVFDEMVVRDVVSWNSLISG 180

Query: 181 FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFK------ 240
           FMKAGHFDEAISVFFRMDVEPS+ TLVSVLAACARNG+LCTGKGIHGVIERRFK      
Sbjct: 181 FMKAGHFDEAISVFFRMDVEPSIATLVSVLAACARNGNLCTGKGIHGVIERRFKVNLVLG 240

Query: 241 ------------------------------------------------------------ 298
                                                                       
Sbjct: 241 NAMLDMYVKNGCFYEAKKMFDELPTRDIVSWTIMITGLVQSDHPKESLELFSMMRTLGIS 300

[Close]

BLAST of CsaV3_2G002280 vs. TrEMBL
Match: tr|A0A2N9FVF6|A0A2N9FVF6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18831 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74
Identity = 134/232 (57.76%), Postives = 171/232 (73.71%), Query Frame = 0


Query: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY 60
           M + KWVLLD I  C N R F+QIHAQL+TSG+V D+ V +KV EF   FVE+ +Y CD 
Sbjct: 1   MLSRKWVLLDFIHRCNNFRFFKQIHAQLLTSGIVRDELVVNKVAEFLGKFVEFVEYGCDI 60

Query: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120
           L+Q +  + SFP N LI+ Y   + P++A  VYRR+VRDGF+PD +TFPV+LK+C+ F G
Sbjct: 61  LKQNDWCISSFPSNLLISSYASSDTPRVAFLVYRRIVRDGFMPDRYTFPVVLKSCTKFLG 120

Query: 121 SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG 180
           S EGRQVHGVVVK+G   D +V NSL+  Y  CGDF  A +VFD+MLVRDVVSW  LISG
Sbjct: 121 SGEGRQVHGVVVKMGFKGDVFVGNSLVHFYSVCGDFCAATRVFDDMLVRDVVSWTGLISG 180

Query: 181 FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERR 233
           +++AG FDEA+++F RMDV P++ + VSVL AC R G L  GKGIHG+I +R
Sbjct: 181 YVRAGLFDEAVALFLRMDVRPNVASFVSVLVACGRMGYLSLGKGIHGLIFKR 232

HSP 2 Score: 115.2 bits (287), Expect = 2.6e-22
Identity = 79/291 (27.15%), Postives = 135/291 (46.39%), Query Frame = 0


Query: 22  RQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFPF------NS 81
           R I+  +   G+  D  + + +++ +A         C  +E         P+      N+
Sbjct: 323 RWINEYIYLRGIKCDTHIGTAMIDMYAK--------CGCVEMALQTFNGMPYKNVYTWNA 382

Query: 82  LINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLG 141
           L+ G          +  +  M++ G  P+  TF  +L AC +     EGR+         
Sbjct: 383 LLGGLAMHGHGHEVLKHFEEMIKSGMRPNEVTFLSILTACCHSGLVDEGRRYF-----YQ 442

Query: 142 LLADHYVQNSLIRCYGACGDFSCAGKVFDEM--------LVRDVVSWNSLISGFMKAGHF 201
           +++  +  +  +  YG   D  C  ++ DE         +  DV  W +L+S    +G+ 
Sbjct: 443 MVSRQHNLSPRLEHYGCMVDMLCRAEILDEAQELIKIMPMSPDVRIWGALLSACKASGNI 502

Query: 202 DEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKRWSNVTRLRRLMK 261
           + +  +  R+    +  + V VL +                I    +RW+ VTR+RRLMK
Sbjct: 503 ELSQEILDRLLEHETQDSGVYVLLS---------------NIYATNQRWAEVTRVRRLMK 562

Query: 262 DRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLNLI-NSVYHESH 298
           D+G++KAPGSSVIEVDGKA+EF+ GD SH + E+++ +LN++ N VY E H
Sbjct: 563 DKGIKKAPGSSVIEVDGKAYEFLAGDTSHPRNEDVHILLNILANQVYLEGH 585

[Close]

BLAST of CsaV3_2G002280 vs. TrEMBL
Match: tr|A0A251QN06|A0A251QN06_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G288100 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.5e-73
Identity = 139/232 (59.91%), Postives = 167/232 (71.98%), Query Frame = 0


Query: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY 60
           M +LKWVLLD I  C  LR F+QIHAQ+VTSGL  +D V + V+ F    V   DYACD+
Sbjct: 5   MHSLKWVLLDLIDRCSGLRCFKQIHAQIVTSGLACNDLVANNVVGFLVKNVNSVDYACDF 64

Query: 61  LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120
            +Q + R+ SFPFN+LI+GY  G+ P  AV VYRR+VRDGFVPDM+T P +LK+C  F G
Sbjct: 65  FKQVDWRVSSFPFNTLISGYANGDKPGAAVLVYRRIVRDGFVPDMYTVPAVLKSCVKFLG 124

Query: 121 SREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISG 180
             EGRQVHGVVVK+G   D Y QNSL+  Y  CGD   A +VFDEM V+DVVSW  LISG
Sbjct: 125 KGEGRQVHGVVVKMGFQCDVYAQNSLVHFYSVCGDCGGATRVFDEMPVKDVVSWTGLISG 184

Query: 181 FMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERR 233
            +KAG FDEAIS+FFRMDV+P++ T VSVL AC R G L  GK IHG+I +R
Sbjct: 185 HVKAGLFDEAISLFFRMDVKPNVATFVSVLVACGRMGYLRVGKAIHGLIFKR 236

HSP 2 Score: 114.0 bits (284), Expect = 5.8e-22
Identity = 87/308 (28.25%), Postives = 144/308 (46.75%), Query Frame = 0


Query: 5   KWVLLDSIKDCKNLRIF---RQIHAQLVTSGLVYDDFVTSKVMEFFA--NFVEYGDYACD 64
           K +L   +  C +L      R +H  +   G+ +D  + + +++ +A    ++      +
Sbjct: 308 KIILASVLSACASLGALDYGRWVHEYIDRRGIKWDIHIGTSLIDMYAKCGCIKMALQTFN 367

Query: 65  YLEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFS 124
            L  GN       +N+L+ G         A+  +  M + G  P+  TF  +L AC +  
Sbjct: 368 ELPCGNVS----TWNALLGGLAMHGNGHEALQNFEEMTKSGTRPNAVTFLAILTACCHSG 427

Query: 125 GSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEM--------LVRDV 184
              EGR          +++  Y  +  +  YG   D  C   + DE         +  DV
Sbjct: 428 LVDEGRGYF-----YQMISQPYNLSPRLEHYGCMVDLLCRAGLVDEAQELINTMPMQPDV 487

Query: 185 VSWNSLISGFMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIER 244
           + W +L+S +   G            DVE S   L  +L     +       G++ ++  
Sbjct: 488 LIWGALLSAYKAKG------------DVELSQEILDRLLQLKLHD------SGVYVLLSN 547

Query: 245 RF---KRWSNVTRLRRLMKDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLNL 296
            +   +RW++VTR+R LMK +G++K+PGSSVIEVDGKAHEF+VGD SH Q E+I+ +LN+
Sbjct: 548 IYATNERWADVTRVRTLMKKKGIQKSPGSSVIEVDGKAHEFLVGDTSHPQHEDIHVLLNI 588

[Close]

BLAST of CsaV3_2G002280 vs. TrEMBL
Match: tr|W9S388|W9S388_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005358 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 136/233 (58.37%), Postives = 169/233 (72.53%), Query Frame = 0


Query: 1   MFNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFAN-FVEYGDYACD 60
           M + KW +LD I+ C N R F+QIHA L+T+GLVY+D + + V+E+F        DYACD
Sbjct: 1   MHSSKWAVLDYIRRCNNWRSFKQIHAYLLTTGLVYNDLIVNSVVEYFGRPSASVVDYACD 60

Query: 61  YLEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFS 120
           +L+  + R  SFPFN++I+GY G E P+ AV VYRR+VRDGF+PD FTFP +LK+C+ F 
Sbjct: 61  FLKHLDWRSNSFPFNTMISGYTGSEMPKAAVLVYRRIVRDGFMPDTFTFPAVLKSCTKFL 120

Query: 121 GSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLIS 180
           G REGRQVH V+V +G     YVQNSL+  Y  CGD   A KVFDEMLVRDVVSW  LIS
Sbjct: 121 GIREGRQVHSVIVVMGFSCHVYVQNSLVHLYSVCGDCDGARKVFDEMLVRDVVSWTCLIS 180

Query: 181 GFMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERR 233
           GF++   FDEAI++F RMDVEP+M TLVSVL AC R G L  GKGIHGV+ +R
Sbjct: 181 GFVRTRLFDEAIALFLRMDVEPNMATLVSVLVACGRKGYLNVGKGIHGVVFKR 233

HSP 2 Score: 106.7 bits (265), Expect = 9.2e-20
Identity = 75/284 (26.41%), Postives = 130/284 (45.77%), Query Frame = 0


Query: 22  RQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFP------FNS 81
           R +H  +   G+ +D  V + +++ +A         C  ++         P      +N+
Sbjct: 325 RWVHEYIDRRGIKWDIQVGTAMVDMYAK--------CGCIDIALRTFNELPSRNIVTWNA 384

Query: 82  LINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLG 141
           L+ G         A+  +  M R    P+  TF  +L AC +      G    G      
Sbjct: 385 LLGGLAMHGHGHEALRKFEEMTRSSTRPNEVTFLAILTACCH-----SGLVDEGXXXXXX 444

Query: 142 LLADHYVQNSLIRCYGACGDFSCAGKVFDEM--------LVRDVVSWNSLISGFMKAGHF 201
              + Y  +  +  YG   D  C   + DE         +V DV+ W +++S     G+ 
Sbjct: 445 XXRESYNISPRLEHYGCMVDLLCRAGLLDEAQNLIKTMPMVPDVLIWGAILSACKITGNV 504

Query: 202 DEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKRWSNVTRLRRLMK 261
           + +  +  R+    S  +   VL +    G+               KRW++VTR+RRLMK
Sbjct: 505 ELSQEILDRLLKLESQDSGAFVLLSNIYAGN---------------KRWADVTRVRRLMK 564

Query: 262 DRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLNLINS 292
           ++G++KAPGSSVIE++G+AH+F+VGD SH Q ++I+ VL+L+++
Sbjct: 565 EKGIKKAPGSSVIELNGQAHKFLVGDSSHPQNDDIHVVLSLLSN 580

The following BLAST results are available for this feature:

BLAST of CsaV3_2G002280 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60620.1	3.7e-137	50.94	hypothetical protein Csa_2G004700 [Cucumis sativus]	[more]
XP_008458315.1	3.6e-132	49.57	PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cuc...	[more]
XP_022968019.1	2.6e-119	88.03	pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucurbita maxi...	[more]
XP_022945046.1	9.4e-117	86.75	pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucurbita mosc...	[more]
XP_023541467.1	9.7e-114	87.67	pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucurbita pepo...	[more]

BLAST of CsaV3_2G002280 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38010.1	4.9e-59	46.49	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G22690.1	9.6e-39	36.40	Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repe...	[more]
AT2G22410.1	7.6e-36	36.52	SLOW GROWTH 1	[more]
AT1G31920.1	1.7e-35	37.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G05240.1	3.2e-34	33.77	mitochondrial editing factor 19	[more]

BLAST of CsaV3_2G002280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZK1\|PP355_ARATH	8.8e-58	46.49	Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LUJ2\|PP249_ARATH	1.7e-37	36.40	Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SJZ3\|PP169_ARATH	1.4e-34	36.52	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
sp\|Q9C6T2\|PPR68_ARATH	3.1e-34	37.00	Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9MA95\|PP214_ARATH	5.8e-33	33.77	Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th...	[more]

BLAST of CsaV3_2G002280 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LF19\|A0A0A0LF19_CUCSA	2.4e-137	50.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004700 PE=4 SV=1	[more]
tr\|A0A1S3C7P6\|A0A1S3C7P6_CUCME	2.4e-132	49.57	pentatricopeptide repeat-containing protein At4g38010 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A2N9FVF6\|A0A2N9FVF6_FAGSY	2.2e-74	57.76	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18831 PE=4 SV=1	[more]
tr\|A0A251QN06\|A0A251QN06_PRUPE	1.5e-73	59.91	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G288100 PE=4 SV=1	[more]
tr\|W9S388\|W9S388_9ROSA	1.9e-73	58.37	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005358 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G002280.1	CsaV3_2G002280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 7..270 e-value: 5.9E-34 score: 119.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 170..214 e-value: 3.0E-8 score: 33.6 coord: 73..116 e-value: 1.4E-8 score: 34.6
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 172..197 e-value: 3.3E-7 score: 28.1 coord: 73..104 e-value: 2.1E-6 score: 25.6 coord: 142..171 e-value: 3.3E-5 score: 21.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 202..232 score: 5.009
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 170..200 score: 10.545
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 104..138 score: 6.281
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 139..169 score: 8.111
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 69..103 score: 10.03
None	No IPR available	PANTHER	PTHR24015:SF266	SUBFAMILY NOT NAMED	coord: 234..280 coord: 17..194
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 234..280 coord: 17..194

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G002280	CSPI02G01190	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G002280	CsGy2G001190	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G002280	Bhi06G001727	Wax gourd	cucwgoB139

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G002280	Silver-seed gourd	carcucB0045
CsaV3_2G002280	Silver-seed gourd	carcucB0147
CsaV3_2G002280	Silver-seed gourd	carcucB0307
CsaV3_2G002280	Silver-seed gourd	carcucB0605
CsaV3_2G002280	Cucurbita maxima (Rimu)	cmacucB0934
CsaV3_2G002280	Cucumber (Gy14) v1	cgycucB156
CsaV3_2G002280	Cucurbita maxima (Rimu)	cmacucB0081
CsaV3_2G002280	Cucurbita maxima (Rimu)	cmacucB0135
CsaV3_2G002280	Cucurbita maxima (Rimu)	cmacucB0202
CsaV3_2G002280	Cucurbita moschata (Rifu)	cmocucB0070
CsaV3_2G002280	Cucurbita moschata (Rifu)	cmocucB0120
CsaV3_2G002280	Cucurbita moschata (Rifu)	cmocucB0185
CsaV3_2G002280	Cucurbita moschata (Rifu)	cmocucB0924
CsaV3_2G002280	Cucurbita pepo (Zucchini)	cpecucB0114
CsaV3_2G002280	Cucurbita pepo (Zucchini)	cpecucB0450
CsaV3_2G002280	Cucurbita pepo (Zucchini)	cpecucB0826
CsaV3_2G002280	Cucurbita pepo (Zucchini)	cpecucB1015
CsaV3_2G002280	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G002280	Bottle gourd (USVL1VR-Ls)	cuclsiB142
CsaV3_2G002280	Melon (DHL92) v3.5.1	cucmeB116
CsaV3_2G002280	Melon (DHL92) v3.5.1	cucmeB142
CsaV3_2G002280	Melon (DHL92) v3.6.1	cucmedB112
CsaV3_2G002280	Melon (DHL92) v3.6.1	cucmedB135
CsaV3_2G002280	Watermelon (Charleston Gray)	cucwcgB112
CsaV3_2G002280	Watermelon (97103) v1	cucwmB174
CsaV3_2G002280	Watermelon (97103) v1	cucwmB186
CsaV3_2G002280	Watermelon (97103) v2	cucwmbB108
CsaV3_2G002280	Watermelon (97103) v2	cucwmbB150
CsaV3_2G002280	Wax gourd	cucwgoB219