CsaV3_2G001950 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G001950
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Ring-finger e3 ubiquitin-protein ligase
Location	chr2 : 646847 .. 648034 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCGCTGCTGTCATGACTGAACCCACAATTAATTTACCTTCGCCATATCCAATCGAATTTCTCTTTGACCTCGATACAGTTCTCTCCGGAGCCGACGACCTCGGTTGCTGCCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACGGTTGTGGCCGATGTTTGTGCCGTTTGTTTAGACGATTTCCACCCAGATGAAGCCGGTAAACAAATACCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGATGCCTTGTCGCTGGCCAACCGCCGGATTCAACTTTGATCCGACGGTAGAGGTTTCTTCTTTCTTTCTTTTTTGGCTTTTTTTGTTGATGAGGTTTGTTCGACAAATTACAAGTAATTAATTGTTGTTGATTATTGTGATTGCGACTCTTCTCCAAATTTGGAATTAGCTGCTAATTGAACATATTAACTCTCTCTCTCTCTCTTAATTTCTTTCTCTAAAGTTACTTAGCTAAAATGAGGTTAGTTTAACCTCCACCTAACTCACTTTTTAAAAATTGGGCACATTTAGTTTATGGAATAAAGTTTGTGAAGTTATGATATTATGAATGACTCATAAAAAATGATAGCTTTTTAACTGTAGAACTCGTAAATTCTAGAAGGATAGAGTTCATGAACTCTCTACAACTTCTTCTCCATTAATTCTTTCGCCGAACATCCATCATGTCTAATCTGAGTTTAAAGATTTAACATAGGTCTTTAAAGTTGCTATTCTAATTTTGGTCCATCACCTATTTGGTATATACTTATTTACACACACTGCTGTATATTGATAGATGAAATTGGAAGTAAAAGAAAAAAGTCTACTATTTTGATAGTTCACTCAAACATTATTCAACCAACACGTGTATGAGATTTTATAGGTTAGATTAACTTAGCTATATTCAATCGTAGCAATTTTCAACAGTTTAAAAGCTAATTTTGTTATAATATTTATATTATCAATTTAAAGTCAATGTTAATTACACTCCTCGTGTAGAGTTAAAAGAAAATAAGCTTCTTTAAAATTAATTTTTTAATAATAACATTATTTATGTTTTGGATTAAAGGCAGTGTTGTGTCAGTTTGTGGGGGCAGCGTGTCACAATCGAGCGGGAAGACGTTCAATAG

mRNA sequence

ATGGCTGCCGCTGCTGTCATGACTGAACCCACAATTAATTTACCTTCGCCATATCCAATCGAATTTCTCTTTGACCTCGATACAGTTCTCTCCGGAGCCGACGACCTCGGTTGCTGCCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACGGTTGTGGCCGATGTTTGTGCCGTTTGTTTAGACGATTTCCACCCAGATGAAGCCGGTAAACAAATACCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGATGCCTTGTCGCTGGCCAACCGCCGGATTCAACTTTGATCCGACGGCAGTGTTGTGTCAGTTTGTGGGGGCAGCGTGTCACAATCGAGCGGGAAGACGTTCAATAG

Coding sequence (CDS)

ATGGCTGCCGCTGCTGTCATGACTGAACCCACAATTAATTTACCTTCGCCATATCCAATCGAATTTCTCTTTGACCTCGATACAGTTCTCTCCGGAGCCGACGACCTCGGTTGCTGCCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACGGTTGTGGCCGATGTTTGTGCCGTTTGTTTAGACGATTTCCACCCAGATGAAGCCGGTAAACAAATACCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGATGCCTTGTCGCTGGCCAACCGCCGGATTCAACTTTGATCCGACGGCAGTGTTGTGTCAGTTTGTGGGGGCAGCGTGTCACAATCGAGCGGGAAGACGTTCAATAG

Protein sequence

MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRRQCCVSLWGQRVTIEREDVQ

Homology

[Close]

BLAST of CsaV3_2G001950 vs. NCBI nr
Match: XP_004150849.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus] >KGN60586.1 hypothetical protein Csa_2G000930 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 7.9e-63
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60
           MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60

Query: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116
           VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 115

[Close]

BLAST of CsaV3_2G001950 vs. NCBI nr
Match: XP_016901521.1 (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 6.9e-59
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGC-CQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPT+ LPSPYPIEFLFDLDTVLSGADDL C CQITPSDSPVADFPTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116
           AVCLDDF PDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116

[Close]

BLAST of CsaV3_2G001950 vs. NCBI nr
Match: XP_022946863.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 196.4 bits (498), Expect = 6.1e-47
Identity = 93/118 (78.81%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60
           MAA +V  E T NL + YPIEFLFDLD VLSGADD GCCQI+ SDS VAD PTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 116
           VCL+DF PDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+   STLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of CsaV3_2G001950 vs. NCBI nr
Match: XP_023545409.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.3 bits (495), Expect = 1.4e-46
Identity = 93/118 (78.81%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60
           MAA +V  E T NL   YPIEFLFDLD VLSGADD GCCQI+ SDS VAD PTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 116
           VCL+DF PDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+   STLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of CsaV3_2G001950 vs. NCBI nr
Match: XP_022154667.1 (E3 ubiquitin-protein ligase RHA1B-like [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 8.2e-36
Identity = 75/103 (72.82%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQIT---PSDSPVADFPTVVAD 60
           MAA AV+ E T NL + YP+E LFDLD VLSG DD GCC +T    SDS VAD PTVVAD
Sbjct: 1   MAAVAVLAETTRNLAAAYPMELLFDLDMVLSGDDDFGCCHVTAANSSDSIVADLPTVVAD 60

Query: 61  VCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           VCAVC +DF  DE GKQIPCGHVYHE CISSWL VADCCPLCR
Sbjct: 61  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCR 103

[Close]

BLAST of CsaV3_2G001950 vs. TAIR10
Match: AT1G68180.1 (RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 48  VADFPTVVADVCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           + D   V   VCA+C ++F   E GK++ C H+YH SCI SWL + + CP+CR
Sbjct: 127 ITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR 179

[Close]

BLAST of CsaV3_2G001950 vs. TAIR10
Match: AT2G27940.1 (RING/U-box superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 7.2e-10
Identity = 35/94 (37.23%), Postives = 43/94 (45.74%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIP-CGHVYHESCISSWLTVADCCPLCRC--------LVAGQPPD 118
           C +CL DF   E  K IP CGHV+H  C+ +WL+    CPLCR         L   +PPD
Sbjct: 140 CVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEPPD 199

Query: 119 -------------STLIRRQCCVSLWGQRVTIER 131
                         T +RR    S  GQR  +ER
Sbjct: 200 QDSAEEHDTCDGVDTCVRRCSSCSSLGQRTGLER 233

[Close]

BLAST of CsaV3_2G001950 vs. TAIR10
Match: AT2G44330.1 (RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR--CLVAGQPPDSTL 113
           CA+C +DF   E+ +++PC H+YH  CI  WLT  + CPLCR    VA    DS L
Sbjct: 96  CAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCRVELPVASSEDDSGL 151

[Close]

BLAST of CsaV3_2G001950 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-09
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 110
           CAVC+D+F      KQ+PC HV+H+ C+  WL + + CP+CR  +    PD
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPD 266

[Close]

BLAST of CsaV3_2G001950 vs. TAIR10
Match: AT5G64920.1 (COP1-interacting protein 8)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-09
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 58  VCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           VCAVC D     E GK++PCGH YH  CI  WL   + CP+CR
Sbjct: 256 VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCR 298

[Close]

BLAST of CsaV3_2G001950 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-09
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 110
           CAVC+DDF      KQ+PC H+YH+ C+  WL + + CP+CR  +    PD
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPD 274

[Close]

BLAST of CsaV3_2G001950 vs. Swiss-Prot
Match: sp|Q9SJJ7|ATL57_ARATH (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 35/94 (37.23%), Postives = 43/94 (45.74%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIP-CGHVYHESCISSWLTVADCCPLCRC--------LVAGQPPD 118
           C +CL DF   E  K IP CGHV+H  C+ +WL+    CPLCR         L   +PPD
Sbjct: 140 CVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEPPD 199

Query: 119 -------------STLIRRQCCVSLWGQRVTIER 131
                         T +RR    S  GQR  +ER
Sbjct: 200 QDSAEEHDTCDGVDTCVRRCSSCSSLGQRTGLER 233

[Close]

BLAST of CsaV3_2G001950 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 110
           CAVC+D+F      KQ+PC HV+H+ C+  WL + + CP+CR  +    PD
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPD 266

[Close]

BLAST of CsaV3_2G001950 vs. Swiss-Prot
Match: sp|Q9SPL2|CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-08
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 58  VCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           VCAVC D     E GK++PCGH YH  CI  WL   + CP+CR
Sbjct: 256 VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCR 298

[Close]

BLAST of CsaV3_2G001950 vs. Swiss-Prot
Match: sp|Q91YL2|RN126_MOUSE (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-08
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQ 107
           C VC +D+   E+ +Q+PC H++H+SCI  WL   D CP+CR  + GQ
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 278

[Close]

BLAST of CsaV3_2G001950 vs. TrEMBL
Match: tr|A0A0A0LKR7|A0A0A0LKR7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 5.2e-63
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60
           MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60

Query: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116
           VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 115

[Close]

BLAST of CsaV3_2G001950 vs. TrEMBL
Match: tr|A0A1S4DZX3|A0A1S4DZX3_CUCME (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.6e-59
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGC-CQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPT+ LPSPYPIEFLFDLDTVLSGADDL C CQITPSDSPVADFPTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116
           AVCLDDF PDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116

[Close]

BLAST of CsaV3_2G001950 vs. TrEMBL
Match: tr|A0A0A0LEZ1|A0A0A0LEZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.8e-22
Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 20  IEFLFDLDTVLSGAD--DLGCCQITPSDSPVADFPTVVA--DVCAVCLDDFHPDEAGKQI 79
           IE +FDLDTVL+GAD                A+ PTV A  DVCAVC++DF PDE GKQI
Sbjct: 15  IESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAVCMEDFLPDEGGKQI 74

Query: 80  PCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDST 112
           PCGHVYH+SC+SSWL++ D CPLCRC +A  P D T
Sbjct: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIA--PGDKT 108

[Close]

BLAST of CsaV3_2G001950 vs. TrEMBL
Match: tr|A0A1U8Q351|A0A1U8Q351_NELNU (E3 ubiquitin-protein ligase RING1-like OS=Nelumbo nucifera OX=4432 GN=LOC104592061 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.6e-19
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 16  SPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTV-VADVCAVCLD--DFHPDEAG 75
           S YPI+  FDLD VL+  +D G  ++  S+S V+D PTV  ADVC VC++  D  P + G
Sbjct: 7   STYPIDLCFDLDLVLTVPEDSG--EVATSESLVSDMPTVYTADVCTVCMEELDAAPGKCG 66

Query: 76  KQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDS 111
           KQ+PCGHVYH +CIS+WL++ D CP+CR  V+G   +S
Sbjct: 67  KQMPCGHVYHPTCISTWLSLYDSCPVCRSSVSGHVSES 102

[Close]

BLAST of CsaV3_2G001950 vs. TrEMBL
Match: tr|A0A2N9GBF9|A0A2N9GBF9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24682 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.7e-17
Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 16  SPYPIEFLFDLDTVLSGADDLG-CCQITPSDSPVAD-FPTVVA-----DVCAVCLDDFHP 75
           S YPI+FLFDLD  L+  DD G   +I    + V D  PTV       DVC+VC+  F  
Sbjct: 5   SNYPIDFLFDLDQALTLVDDSGQHIKIEAQKTLVIDHMPTVTPTDNDHDVCSVCIQSFRS 64

Query: 76  DEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQ 107
            E GKQ+PCGHVYH +CI+SWL+  + CPLCRC ++ +
Sbjct: 65  GEGGKQVPCGHVYHATCIASWLSRHNSCPLCRCKISSE 102

The following BLAST results are available for this feature:

BLAST of CsaV3_2G001950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150849.1	7.9e-63	100.00	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus] >KGN60586.1...	[more]
XP_016901521.1	6.9e-59	95.69	PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo]	[more]
XP_022946863.1	6.1e-47	78.81	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
XP_023545409.1	1.4e-46	78.81	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022154667.1	8.2e-36	72.82	E3 ubiquitin-protein ligase RHA1B-like [Momordica charantia]	[more]

BLAST of CsaV3_2G001950 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68180.1	1.5e-10	45.28	RING/U-box superfamily protein	[more]
AT2G27940.1	7.2e-10	37.23	RING/U-box superfamily protein	[more]
AT2G44330.1	1.2e-09	46.43	RING/U-box superfamily protein	[more]
AT3G19950.1	1.6e-09	43.14	RING/U-box superfamily protein	[more]
AT5G64920.1	2.7e-09	53.49	COP1-interacting protein 8	[more]

BLAST of CsaV3_2G001950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P0CH30\|RING1_GOSHI	5.9e-09	45.10	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
sp\|Q9SJJ7\|ATL57_ARATH	1.3e-08	37.23	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]
sp\|Q8LPN7\|RNG1L_ARATH	2.9e-08	43.14	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
sp\|Q9SPL2\|CIP8_ARATH	5.0e-08	53.49	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV...	[more]
sp\|Q91YL2\|RN126_MOUSE	5.0e-08	45.83	E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1	[more]

BLAST of CsaV3_2G001950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LKR7\|A0A0A0LKR7_CUCSA	5.2e-63	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1	[more]
tr\|A0A1S4DZX3\|A0A1S4DZX3_CUCME	4.6e-59	95.69	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV...	[more]
tr\|A0A0A0LEZ1\|A0A0A0LEZ1_CUCSA	5.8e-22	58.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1	[more]
tr\|A0A1U8Q351\|A0A1U8Q351_NELNU	4.6e-19	51.02	E3 ubiquitin-protein ligase RING1-like OS=Nelumbo nucifera OX=4432 GN=LOC1045920...	[more]
tr\|A0A2N9GBF9\|A0A2N9GBF9_FAGSY	5.7e-17	48.98	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24682 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G001950.1	CsaV3_2G001950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..134
None	No IPR available	PANTHER	PTHR44679	FAMILY NOT NAMED	coord: 58..101
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 58..104
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 59..99 e-value: 1.2E-6 score: 38.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 58..100 e-value: 2.3E-11 score: 43.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..100 score: 12.666
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 53..113 e-value: 1.3E-15 score: 58.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G001950	Cucurbita maxima (Rimu)	cmacucB0934
CsaV3_2G001950	Cucumber (Gy14) v2	cgybcucB020
CsaV3_2G001950	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G001950	Cucumber (Gy14) v2	cgybcucB113
CsaV3_2G001950	Cucumber (Gy14) v1	cgycucB156
CsaV3_2G001950	Cucumber (Gy14) v1	cgycucB447
CsaV3_2G001950	Cucurbita maxima (Rimu)	cmacucB0081
CsaV3_2G001950	Cucurbita maxima (Rimu)	cmacucB0135
CsaV3_2G001950	Cucurbita maxima (Rimu)	cmacucB0202
CsaV3_2G001950	Cucurbita maxima (Rimu)	cmacucB0525
CsaV3_2G001950	Cucurbita moschata (Rifu)	cmocucB0070
CsaV3_2G001950	Cucurbita moschata (Rifu)	cmocucB0120
CsaV3_2G001950	Cucurbita moschata (Rifu)	cmocucB0185
CsaV3_2G001950	Cucurbita moschata (Rifu)	cmocucB0265
CsaV3_2G001950	Cucurbita moschata (Rifu)	cmocucB0511
CsaV3_2G001950	Cucurbita moschata (Rifu)	cmocucB0924
CsaV3_2G001950	Cucurbita pepo (Zucchini)	cpecucB0114
CsaV3_2G001950	Cucurbita pepo (Zucchini)	cpecucB0450
CsaV3_2G001950	Cucurbita pepo (Zucchini)	cpecucB0678
CsaV3_2G001950	Cucurbita pepo (Zucchini)	cpecucB0744
CsaV3_2G001950	Cucurbita pepo (Zucchini)	cpecucB0826
CsaV3_2G001950	Cucurbita pepo (Zucchini)	cpecucB1015
CsaV3_2G001950	Wild cucumber (PI 183967)	cpicucB024
CsaV3_2G001950	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G001950	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G001950	Bottle gourd (USVL1VR-Ls)	cuclsiB145
CsaV3_2G001950	Bottle gourd (USVL1VR-Ls)	cuclsiB149
CsaV3_2G001950	Melon (DHL92) v3.5.1	cucmeB117
CsaV3_2G001950	Melon (DHL92) v3.5.1	cucmeB133
CsaV3_2G001950	Melon (DHL92) v3.5.1	cucmeB142
CsaV3_2G001950	Melon (DHL92) v3.6.1	cucmedB109
CsaV3_2G001950	Melon (DHL92) v3.6.1	cucmedB127
CsaV3_2G001950	Melon (DHL92) v3.6.1	cucmedB135
CsaV3_2G001950	Watermelon (Charleston Gray)	cucwcgB112
CsaV3_2G001950	Watermelon (Charleston Gray)	cucwcgB146
CsaV3_2G001950	Watermelon (Charleston Gray)	cucwcgB171
CsaV3_2G001950	Watermelon (97103) v1	cucwmB128
CsaV3_2G001950	Watermelon (97103) v1	cucwmB133
CsaV3_2G001950	Watermelon (97103) v1	cucwmB174
CsaV3_2G001950	Watermelon (97103) v2	cucwmbB108
CsaV3_2G001950	Watermelon (97103) v2	cucwmbB133
CsaV3_2G001950	Watermelon (97103) v2	cucwmbB157
CsaV3_2G001950	Wax gourd	cucwgoB179
CsaV3_2G001950	Wax gourd	cucwgoB151
CsaV3_2G001950	Wax gourd	cucwgoB216
CsaV3_2G001950	Silver-seed gourd	carcucB0045
CsaV3_2G001950	Silver-seed gourd	carcucB0110
CsaV3_2G001950	Silver-seed gourd	carcucB0223
CsaV3_2G001950	Silver-seed gourd	carcucB0605
CsaV3_2G001950	Silver-seed gourd	carcucB0937