CsaV3_1G046640 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G046640
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 32624332 .. 32624693 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATCATTTCGCGTGCCCCACCCTTCAATCTTCTTCTTCGTTTCTCTCCAGCTACCATCATCACTTGTCTTTTGCTCTCCATCAGTCGAACATCTGTTGAACATCAGTCGTGTTGCACGTTGCATCACTACTGTGTGTTTCGCCGTCCACGCCACTGTTGCATCTCCAAAAATCCAGTTGATTTTTGTGGCATACGAAGCTTGTTGCAAATATGAGCCTATCTTCTTTCAGTTTGCAGGCTAGGGTTCTCTTTGTCAAGCCAACGTTCCTCTGTCTGTTGTCAGTCGAAACCCGAACTAAAGCCAATCACCCTCTCAGTCGTGCATTGAGCCGACGAGAGTGGTTTCCTCATACCTAA

mRNA sequence

ATGTTTATCATTTCGCGTGCCCCACCCTTCAATCTTCTTCTTCGTTTCTCTCCAGCTACCATCATCACTTGTCTTTTGCTCTCCATCAGTCGAACATCTGTTGAACATCAGTCGTGTTGCACGTTGCATCACTACTGTGTGTTTCGCCGTCCACGCCACTGTTGCATCTCCAAAAATCCAGCTAGGGTTCTCTTTGTCAAGCCAACGTTCCTCTGTCTGTTGTCAGTCGAAACCCGAACTAAAGCCAATCACCCTCTCAGTCGTGCATTGAGCCGACGAGAGTGGTTTCCTCATACCTAA

Coding sequence (CDS)

ATGTTTATCATTTCGCGTGCCCCACCCTTCAATCTTCTTCTTCGTTTCTCTCCAGCTACCATCATCACTTGTCTTTTGCTCTCCATCAGTCGAACATCTGTTGAACATCAGTCGTGTTGCACGTTGCATCACTACTGTGTGTTTCGCCGTCCACGCCACTGTTGCATCTCCAAAAATCCAGCTAGGGTTCTCTTTGTCAAGCCAACGTTCCTCTGTCTGTTGTCAGTCGAAACCCGAACTAAAGCCAATCACCCTCTCAGTCGTGCATTGAGCCGACGAGAGTGGTTTCCTCATACCTAA

Protein sequence

MFIISRAPPFNLLLRFSPATIITCLLLSISRTSVEHQSCCTLHHYCVFRRPRHCCISKNPARVLFVKPTFLCLLSVETRTKANHPLSRALSRREWFPHT
Homology
[Close]
BLAST of CsaV3_1G046640 vs. NCBI nr
Match: KGN66907.1 (hypothetical protein Csa_1G713160 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MFIISRAPPFNLLLRFSPATIITCLLLSISRTSVEHQSCCTLHHYCVFRRPRHCCISKNP 60
           MFIISRAPPFNLLLRFSPATIITCLLLSISRTSVEHQSCCTLHHYCVFRRPRHCCISKNP
Sbjct: 1   MFIISRAPPFNLLLRFSPATIITCLLLSISRTSVEHQSCCTLHHYCVFRRPRHCCISKNP 60

Query: 61  ARVLFVKPTFLCLLSVETRTKANHPLSRALSRREWFPHT 100
           ARVLFVKPTFLCLLSVETRTKANHPLSRALSRREWFPHT
Sbjct: 61  ARVLFVKPTFLCLLSVETRTKANHPLSRALSRREWFPHT 99

[Close]
BLAST of CsaV3_1G046640 vs. TrEMBL
Match: tr|A0A0A0M1A8|A0A0A0M1A8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G713160 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.6e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MFIISRAPPFNLLLRFSPATIITCLLLSISRTSVEHQSCCTLHHYCVFRRPRHCCISKNP 60
           MFIISRAPPFNLLLRFSPATIITCLLLSISRTSVEHQSCCTLHHYCVFRRPRHCCISKNP
Sbjct: 1   MFIISRAPPFNLLLRFSPATIITCLLLSISRTSVEHQSCCTLHHYCVFRRPRHCCISKNP 60

Query: 61  ARVLFVKPTFLCLLSVETRTKANHPLSRALSRREWFPHT 100
           ARVLFVKPTFLCLLSVETRTKANHPLSRALSRREWFPHT
Sbjct: 61  ARVLFVKPTFLCLLSVETRTKANHPLSRALSRREWFPHT 99

The following BLAST results are available for this feature:
BLAST of CsaV3_1G046640 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66907.11.1e-50100.00hypothetical protein Csa_1G713160 [Cucumis sativus][more]
BLAST of CsaV3_1G046640 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G046640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G046640 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M1A8|A0A0A0M1A8_CUCSA7.6e-51100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G713160 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G046640.1CsaV3_1G046640.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G046640Silver-seed gourdcarcucB0431
CsaV3_1G046640Silver-seed gourdcarcucB0484
CsaV3_1G046640Cucumber (Gy14) v2cgybcucB001
CsaV3_1G046640Cucumber (Gy14) v1cgycucB356
CsaV3_1G046640Cucurbita maxima (Rimu)cmacucB0238
CsaV3_1G046640Cucurbita maxima (Rimu)cmacucB0477
CsaV3_1G046640Cucurbita moschata (Rifu)cmocucB0225
CsaV3_1G046640Cucurbita moschata (Rifu)cmocucB0465
CsaV3_1G046640Cucurbita pepo (Zucchini)cpecucB0022
CsaV3_1G046640Cucurbita pepo (Zucchini)cpecucB0637
CsaV3_1G046640Wild cucumber (PI 183967)cpicucB000
CsaV3_1G046640Bottle gourd (USVL1VR-Ls)cuclsiB034
CsaV3_1G046640Melon (DHL92) v3.5.1cucmeB012
CsaV3_1G046640Melon (DHL92) v3.5.1cucmeB032
CsaV3_1G046640Melon (DHL92) v3.6.1cucmedB011
CsaV3_1G046640Melon (DHL92) v3.6.1cucmedB029
CsaV3_1G046640Watermelon (Charleston Gray)cucwcgB025
CsaV3_1G046640Watermelon (97103) v1cucwmB062
CsaV3_1G046640Watermelon (97103) v2cucwmbB010
CsaV3_1G046640Wax gourdcucwgoB034