CsaV3_1G045990 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G045990
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionAnkyrin repeat-containing protein
Locationchr1 : 31807365 .. 31807990 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCACAACAAAATGAAATGGACGGCTTGTGAGTTCTTCTACAAGACACATGAGAAAATGCTCAACGATGCCGAAGAATGGCTTAAGAAAACCTCCGAGTCTTGTTCTGCTGTCGCAGTTCTGGTCGCGACTGTCGTCTTTGCCGCTGCCTACACTGTCCCTGGCGGACTCAATAGCAAGACTGGCTCCCCTGTTCTCCTTACTGAACCTATATATATTGTGTTCACAATCATGGACATTATCGCACTAGCCACAGCACTAACGTCAGTGGTTCTGTTTCTTTCCATTCTAACATCTTCGTTTAAGATGGAAGATTTTCTACACACATTGCCGATGAAACTCTCGATTGGATTCCAGTTGTTGTTTTTCTCAGTGGCGAGTACAATGATGGCATTCGCATTGACGATTGTGTTGACAATAAAATCGAAGGAGATGAAGTGGACGATGAGTTTGTTATATATTGCGACATTTCTTCCGGTGACCATGTTTATTATAATTCAACTACCTTTGTATGTGGAGTTGGTAAAAAATATATGGAGTTATCGCCAAAATATTTTCAAGTTTCTTCCCATGGGTTTTCTTGCTTTGTTTTGGGAACTTCCTTCCAAACTTTTGAGGTATAG

mRNA sequence

ATGCACCACAACAAAATGAAATGGACGGCTTGTGAGTTCTTCTACAAGACACATGAGAAAATGCTCAACGATGCCGAAGAATGGCTTAAGAAAACCTCCGAGTCTTGTTCTGCTGTCGCAGTTCTGGTCGCGACTGTCGTCTTTGCCGCTGCCTACACTGTCCCTGGCGGACTCAATAGCAAGACTGGCTCCCCTGTTCTCCTTACTGAACCTATATATATTGTGTTCACAATCATGGACATTATCGCACTAGCCACAGCACTAACTGGCGAGTACAATGATGGCATTCGCATTGACGATTGTGTTGACAATAAAATCGAAGGAGATGAAGTGGACGATGAGTTTGTTATATATTGCGACATTTCTTCCGGTGACCATGTTTATTATAATTCAACTACCTTTGTATGTGGAGTTGGTAAAAAATATATGGAGTTATCGCCAAAATATTTTCAAGTTTCTTCCCATGGGTTTTCTTGCTTTGTTTTGGGAACTTCCTTCCAAACTTTTGAGGTATAG

Coding sequence (CDS)

ATGCACCACAACAAAATGAAATGGACGGCTTGTGAGTTCTTCTACAAGACACATGAGAAAATGCTCAACGATGCCGAAGAATGGCTTAAGAAAACCTCCGAGTCTTGTTCTGCTGTCGCAGTTCTGGTCGCGACTGTCGTCTTTGCCGCTGCCTACACTGTCCCTGGCGGACTCAATAGCAAGACTGGCTCCCCTGTTCTCCTTACTGAACCTATATATATTGTGTTCACAATCATGGACATTATCGCACTAGCCACAGCACTAACTGGCGAGTACAATGATGGCATTCGCATTGACGATTGTGTTGACAATAAAATCGAAGGAGATGAAGTGGACGATGAGTTTGTTATATATTGCGACATTTCTTCCGGTGACCATGTTTATTATAATTCAACTACCTTTGTATGTGGAGTTGGTAAAAAATATATGGAGTTATCGCCAAAATATTTTCAAGTTTCTTCCCATGGGTTTTCTTGCTTTGTTTTGGGAACTTCCTTCCAAACTTTTGAGGTATAG

Protein sequence

MHHNKMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNSKTGSPVLLTEPIYIVFTIMDIIALATALTGEYNDGIRIDDCVDNKIEGDEVDDEFVIYCDISSGDHVYYNSTTFVCGVGKKYMELSPKYFQVSSHGFSCFVLGTSFQTFEV
BLAST of CsaV3_1G045990 vs. NCBI nr
Match: XP_011648561.1 (PREDICTED: uncharacterized protein LOC101203890 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 6.1e-36
Identity = 78/89 (87.64%), Postives = 86/89 (96.63%), Query Frame = 0

Query: 1   MHHNKMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNS 60
           MHHNKMKWT  E+FYKTHEKML+ A+EWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNS
Sbjct: 440 MHHNKMKWTPREYFYKTHEKMLDQAKEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNS 499

Query: 61  KTGSPVLLTEPIYIVFTIMDIIALATALT 90
           KTGSP+LLTEPIY+VFT+MDI+ALATAL+
Sbjct: 500 KTGSPILLTEPIYVVFTVMDILALATALS 528

BLAST of CsaV3_1G045990 vs. NCBI nr
Match: XP_008459132.1 (PREDICTED: protein ACCELERATED CELL DEATH 6-like [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-35
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = 0

Query: 1   MHHNKMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNS 60
           MHHNKMKWTA +FFYKT EKML+DA++WLKKTSESCS VAVLVATVVFAAAYTVPGGLN+
Sbjct: 122 MHHNKMKWTARDFFYKTLEKMLDDAKQWLKKTSESCSVVAVLVATVVFAAAYTVPGGLNT 181

Query: 61  KTGSPVLLTEPIYIVFTIMDIIALATALT 90
           KTGSPVLLTEPIYIVFT+MDIIALATALT
Sbjct: 182 KTGSPVLLTEPIYIVFTVMDIIALATALT 210

BLAST of CsaV3_1G045990 vs. NCBI nr
Match: XP_022975228.1 (uncharacterized protein LOC111474320 [Cucurbita maxima])

HSP 1 Score: 155.6 bits (392), Expect = 1.5e-34
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0

Query: 1   MHHNKMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNS 60
           MHH+KMKWTA EFF KTH K+L D +EWLKKTSESCSAVAVL++TVVFAAAYTVPGGLNS
Sbjct: 474 MHHSKMKWTAREFFEKTHNKLLEDGKEWLKKTSESCSAVAVLISTVVFAAAYTVPGGLNS 533

Query: 61  KTGSPVLLTEPIYIVFTIMDIIALATALT 90
           KTGSPVLLTEPIYIVFTIMDII LATALT
Sbjct: 534 KTGSPVLLTEPIYIVFTIMDIIGLATALT 562

BLAST of CsaV3_1G045990 vs. NCBI nr
Match: XP_022974704.1 (uncharacterized protein LOC111473443 [Cucurbita maxima])

HSP 1 Score: 154.5 bits (389), Expect = 3.4e-34
Identity = 77/89 (86.52%), Postives = 83/89 (93.26%), Query Frame = 0

Query: 1   MHHNKMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNS 60
           MHH+KM+WTA EFF KTH K+L D +EWLKKTSESCSAVAVL++TVVFAAAYTVPGGLNS
Sbjct: 474 MHHSKMRWTAREFFEKTHNKLLEDGKEWLKKTSESCSAVAVLISTVVFAAAYTVPGGLNS 533

Query: 61  KTGSPVLLTEPIYIVFTIMDIIALATALT 90
           KTGSPVLLTEPIYIVFTIMDII LATALT
Sbjct: 534 KTGSPVLLTEPIYIVFTIMDIIGLATALT 562

BLAST of CsaV3_1G045990 vs. NCBI nr
Match: XP_022940456.1 (uncharacterized protein LOC111446049 [Cucurbita moschata])

HSP 1 Score: 153.7 bits (387), Expect = 5.8e-34
Identity = 77/89 (86.52%), Postives = 82/89 (92.13%), Query Frame = 0

Query: 1   MHHNKMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNS 60
           MHH+KMKWTA EFF KTH K+L D +EWLKKTSESCSAVAVL++TVVFAAAYTVPGGLNS
Sbjct: 474 MHHSKMKWTAREFFEKTHNKLLEDGKEWLKKTSESCSAVAVLISTVVFAAAYTVPGGLNS 533

Query: 61  KTGSPVLLTEPIYIVFTIMDIIALATALT 90
            TGSPVLLTEPIYIVFTIMDII LATALT
Sbjct: 534 NTGSPVLLTEPIYIVFTIMDIIGLATALT 562

BLAST of CsaV3_1G045990 vs. TAIR10
Match: AT5G04690.1 (Ankyrin repeat family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 4   NKMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNSKTG 63
           N    T  E F K HE M  +AE+W+K T+ SCS VA L+ TV FAA +TVPGG +  +G
Sbjct: 438 NTENLTPIEIFRKEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSG 497

Query: 64  S-PVLLTEPIYIVFTIMDIIALATALT 90
             P    E I+++F + D+I+   A T
Sbjct: 498 GRPFHRHERIFVIFIVSDLISCFAACT 524

BLAST of CsaV3_1G045990 vs. TAIR10
Match: AT5G04700.1 (Ankyrin repeat family protein)

HSP 1 Score: 67.4 bits (163), Expect = 9.8e-12
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 4   NKMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGL--NSK 63
           N  + T  E F K H+ +  +AE+W+K T+ SCS VA L+ TV FAA +TVPGG   NSK
Sbjct: 480 NTEEQTPIEIFTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSK 539

Query: 64  TGSPVLLTEPIYIVFTIMDIIALATALT 90
            G P  L +  +I+F + D+I+   + T
Sbjct: 540 -GKPFHLRDRRFIIFIVSDLISCFASCT 566

BLAST of CsaV3_1G045990 vs. TAIR10
Match: AT5G04730.1 (Ankyrin-repeat containing protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-11
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 4   NKMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNSKTG 63
           NK   T  + F   HE +  + EEW+K T+ +CS VA L+ATV F A +TVPGG++  +G
Sbjct: 415 NKDNKTPRQIFEHYHEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSG 474

Query: 64  SPVLLTEPIYIVFTIMDIIA 84
           SP++L +  +  F   D +A
Sbjct: 475 SPLILNDLHFRAFIFTDTLA 494

BLAST of CsaV3_1G045990 vs. TAIR10
Match: AT5G35810.1 (Ankyrin repeat family protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 4   NKMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNSK-- 63
           NK +  A + F K H+ +  + E+W+K+T+ +C  V+ L+ATVVFAAA+T+PGG ++   
Sbjct: 152 NKKEEVAHDLFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGGNDTSGD 211

Query: 64  ---TGSPVLLTEPIYIVFTIMDIIALATALT 90
               G P    E  + VF I D +AL +++T
Sbjct: 212 IKTLGFPTFRKEFWFEVFIISDSVALLSSVT 242

BLAST of CsaV3_1G045990 vs. TAIR10
Match: AT3G18670.1 (Ankyrin repeat family protein)

HSP 1 Score: 60.8 bits (146), Expect = 9.2e-10
Identity = 31/83 (37.35%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 5   KMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNSKTGS 64
           K K T    F   H+ ++   E+W+K+T+ SC+ VA L+ T++F++A+TVPGG  S  G 
Sbjct: 411 KQKKTPKALFTDQHKDLVEQGEKWMKETATSCTVVAALITTMMFSSAFTVPGGYRS-DGM 470

Query: 65  PVLLTEPIYIVFTIMDIIALATA 88
           P+ + +  + +F I D I+L T+
Sbjct: 471 PLYIHQHRFKIFLISDAISLFTS 492

BLAST of CsaV3_1G045990 vs. TrEMBL
Match: tr|A0A1S3C9K3|A0A1S3C9K3_CUCME (protein ACCELERATED CELL DEATH 6-like OS=Cucumis melo OX=3656 GN=LOC103498332 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.9e-36
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = 0

Query: 1   MHHNKMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNS 60
           MHHNKMKWTA +FFYKT EKML+DA++WLKKTSESCS VAVLVATVVFAAAYTVPGGLN+
Sbjct: 122 MHHNKMKWTARDFFYKTLEKMLDDAKQWLKKTSESCSVVAVLVATVVFAAAYTVPGGLNT 181

Query: 61  KTGSPVLLTEPIYIVFTIMDIIALATALT 90
           KTGSPVLLTEPIYIVFT+MDIIALATALT
Sbjct: 182 KTGSPVLLTEPIYIVFTVMDIIALATALT 210

BLAST of CsaV3_1G045990 vs. TrEMBL
Match: tr|A0A0A0M0P8|A0A0A0M0P8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701200 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26
Identity = 63/87 (72.41%), Postives = 77/87 (88.51%), Query Frame = 0

Query: 2   HHNKMKWTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNSK 61
           H NK+ W A EFF +TH+++L+ A+EWLK TSESCSAVAVLVATVVFAAA++VPGGLN K
Sbjct: 191 HQNKVGWEAREFFDETHKEILDSAKEWLKNTSESCSAVAVLVATVVFAAAFSVPGGLNGK 250

Query: 62  TGSPVLLTEPIYIVFTIMDIIALATAL 89
           TGSPVLLT+P+Y+VFTI+DII L T+L
Sbjct: 251 TGSPVLLTQPLYMVFTIVDIIGLTTSL 277

BLAST of CsaV3_1G045990 vs. TrEMBL
Match: tr|A0A2P5BTM1|A0A2P5BTM1_PARAD (Ankyrin repeat-containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_211490 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.8e-23
Identity = 56/81 (69.14%), Postives = 71/81 (87.65%), Query Frame = 0

Query: 9   TACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLNSKTGSPVLL 68
           TA E F +THEK+L +A+EWLK+TSESCSAVAVL+ATV FAAAYTVPGG N  TG P+LL
Sbjct: 142 TAEELFRRTHEKLLKEAQEWLKRTSESCSAVAVLIATVAFAAAYTVPGGSNQDTGVPILL 201

Query: 69  TEPIYIVFTIMDIIALATALT 90
           T+P ++VFTIMD+++LA++LT
Sbjct: 202 TDPFFLVFTIMDVLSLASSLT 222

BLAST of CsaV3_1G045990 vs. TrEMBL
Match: tr|A0A2K2AN07|A0A2K2AN07_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G003600v3 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.0e-23
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 0

Query: 1   MHHNKMK-WTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLN 60
           MH ++ K  TA EFF KTH K+L +A+EWLK+TSESCS VAVL+ATV FAAAYTVPGG N
Sbjct: 489 MHRSRYKDKTAQEFFKKTHTKLLKEAQEWLKRTSESCSTVAVLIATVAFAAAYTVPGGSN 548

Query: 61  SKTGSPVLLTEPIYIVFTIMDIIALATALT 90
             TG PVLL +PI++VFT+MD+++LA++LT
Sbjct: 549 QDTGLPVLLHDPIFLVFTVMDVLSLASSLT 578

BLAST of CsaV3_1G045990 vs. TrEMBL
Match: tr|A0A2K1R4Z1|A0A2K1R4Z1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T156300v3 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.0e-23
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 0

Query: 1   MHHNKMK-WTACEFFYKTHEKMLNDAEEWLKKTSESCSAVAVLVATVVFAAAYTVPGGLN 60
           MH ++ K  TA EFF KTH K+L +A+EWLK+TSESCS VAVL+ATV FAAAYTVPGG N
Sbjct: 510 MHRSRYKDKTAQEFFKKTHTKLLKEAQEWLKRTSESCSTVAVLIATVAFAAAYTVPGGSN 569

Query: 61  SKTGSPVLLTEPIYIVFTIMDIIALATALT 90
             TG PVLL +PI++VFT+MD+++LA++LT
Sbjct: 570 QDTGLPVLLHDPIFLVFTVMDVLSLASSLT 599

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011648561.16.1e-3687.64PREDICTED: uncharacterized protein LOC101203890 [Cucumis sativus][more]
XP_008459132.11.0e-3589.89PREDICTED: protein ACCELERATED CELL DEATH 6-like [Cucumis melo][more]
XP_022975228.11.5e-3487.64uncharacterized protein LOC111474320 [Cucurbita maxima][more]
XP_022974704.13.4e-3486.52uncharacterized protein LOC111473443 [Cucurbita maxima][more]
XP_022940456.15.8e-3486.52uncharacterized protein LOC111446049 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT5G04690.11.5e-1243.68Ankyrin repeat family protein[more]
AT5G04700.19.8e-1243.18Ankyrin repeat family protein[more]
AT5G04730.12.2e-1141.25Ankyrin-repeat containing protein[more]
AT5G35810.11.1e-1038.46Ankyrin repeat family protein[more]
AT3G18670.19.2e-1037.35Ankyrin repeat family protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3C9K3|A0A1S3C9K3_CUCME6.9e-3689.89protein ACCELERATED CELL DEATH 6-like OS=Cucumis melo OX=3656 GN=LOC103498332 PE... [more]
tr|A0A0A0M0P8|A0A0A0M0P8_CUCSA2.2e-2672.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701200 PE=4 SV=1[more]
tr|A0A2P5BTM1|A0A2P5BTM1_PARAD1.8e-2369.14Ankyrin repeat-containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14... [more]
tr|A0A2K2AN07|A0A2K2AN07_POPTR3.0e-2365.56Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G003600v3 PE=... [more]
tr|A0A2K1R4Z1|A0A2K1R4Z1_POPTR3.0e-2365.56Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T156300v3 PE=4 S... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026961PGG_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G045990.1CsaV3_1G045990.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 26..89
e-value: 7.1E-19
score: 67.6
NoneNo IPR availablePANTHERPTHR24177FAMILY NOT NAMEDcoord: 1..89
NoneNo IPR availablePANTHERPTHR24177:SF71SUBFAMILY NOT NAMEDcoord: 1..89

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G045990CSPI01G34100Wild cucumber (PI 183967)cpicucB000
CsaV3_1G045990Lsi02G010750Bottle gourd (USVL1VR-Ls)cuclsiB034
The following gene(s) are paralogous to this gene:

None