CsaV3_1G045820 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G045820
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 31641965 .. 31642150 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCGGGGAACGAACGGTCGAGGAACAAAGAATGACAAACTCGTGTAGATGGAGGAAGACGAATCACGGCGGAAGACAAAAGACCCATGAACGAAAAACGTTCAGCCAACAGAGAACGATAAGAGAATGGAGAATGGCGAATTCGTGTAGATGGAGGAAGACGAACGACGAGGAAGACGAATGA

mRNA sequence

ATGCCCGGGGAACGAACGGTCGAGGAACAAAGAATGACAAACTCGTGTAGATGGAGGAAGACGAATCACGGCGGAAGACAAAAGACCCATGAACGAAAAACGTTCAGCCAACAGAGAACGATAAGAGAATGGAGAATGGCGAATTCGTGTAGATGGAGGAAGACGAACGACGAGGAAGACGAATGA

Coding sequence (CDS)

ATGCCCGGGGAACGAACGGTCGAGGAACAAAGAATGACAAACTCGTGTAGATGGAGGAAGACGAATCACGGCGGAAGACAAAAGACCCATGAACGAAAAACGTTCAGCCAACAGAGAACGATAAGAGAATGGAGAATGGCGAATTCGTGTAGATGGAGGAAGACGAACGACGAGGAAGACGAATGA

Protein sequence

MPGERTVEEQRMTNSCRWRKTNHGGRQKTHERKTFSQQRTIREWRMANSCRWRKTNDEEDE

Homology

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BLAST of CsaV3_1G045820 vs. NCBI nr
Match: KGN66821.1 (hypothetical protein Csa_1G697030 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MPGERTVEEQRMTNSCRWRKTNHGGRQKTHERKTFSQXXXXXXXXXXXXXXXXXXXXEED 60
          MPGERTVEEQRMTNSCRWRKTNHGGRQKTHERKTFSQXXXXXXXXXXXXXXXXXXXXEED
Sbjct: 1  MPGERTVEEQRMTNSCRWRKTNHGGRQKTHERKTFSQXXXXXXXXXXXXXXXXXXXXEED 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of CsaV3_1G045820 vs. TrEMBL
Match: tr|A0A0A0M3L9|A0A0A0M3L9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G697030 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.7e-13
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MPGERTVEEQRMTNSCRWRKTNHGGRQKTHERKTFSQXXXXXXXXXXXXXXXXXXXXEED 60
          MPGERTVEEQRMTNSCRWRKTNHGGRQKTHERKTFSQXXXXXXXXXXXXXXXXXXXXEED
Sbjct: 1  MPGERTVEEQRMTNSCRWRKTNHGGRQKTHERKTFSQXXXXXXXXXXXXXXXXXXXXEED 60

Query: 61 E 62
          E
Sbjct: 61 E 61

The following BLAST results are available for this feature:

BLAST of CsaV3_1G045820 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66821.1	1.3e-12	100.00	hypothetical protein Csa_1G697030 [Cucumis sativus]	[more]

BLAST of CsaV3_1G045820 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G045820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G045820 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M3L9\|A0A0A0M3L9_CUCSA	8.7e-13	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G697030 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G045820.1	CsaV3_1G045820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..38

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G045820	CSPI01G33930	Wild cucumber (PI 183967)	cpicucB000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G045820	Silver-seed gourd	carcucB0038
CsaV3_1G045820	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G045820	Cucumber (Gy14) v1	cgycucB513
CsaV3_1G045820	Cucurbita moschata (Rifu)	cmocucB0098
CsaV3_1G045820	Cucurbita pepo (Zucchini)	cpecucB0820
CsaV3_1G045820	Bottle gourd (USVL1VR-Ls)	cuclsiB089
CsaV3_1G045820	Melon (DHL92) v3.5.1	cucmeB045
CsaV3_1G045820	Melon (DHL92) v3.6.1	cucmedB042
CsaV3_1G045820	Watermelon (Charleston Gray)	cucwcgB083
CsaV3_1G045820	Watermelon (Charleston Gray)	cucwcgB091
CsaV3_1G045820	Watermelon (97103) v1	cucwmB051
CsaV3_1G045820	Watermelon (97103) v1	cucwmB099
CsaV3_1G045820	Watermelon (97103) v2	cucwmbB072
CsaV3_1G045820	Watermelon (97103) v2	cucwmbB079
CsaV3_1G045820	Wax gourd	cucwgoB112