CsaV3_1G045810 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G045810
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 31628455 .. 31633253 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAATTGTAAAAAAAAAATAGAATATCTATAAAAAAATCTAAAGTGTAATAAATTTTGTGTGGGTGTGATTTTATTCTATCAAATGTAAATAATATCTCAACTTTTTCTATGTTTTGAAAACAGCCCTTTTAATTTTTATAAAGTCATTCCATGTATACTTTAGTTTAATTATAATAGTATTTTTTAAAATATGCTTTTCCTCATGATTTTCTTTCTTGCAACATTCTTTTGGATGCTAATGTTTGACTAACCCCTGATTTGGACTATTATTAGATAGTAAATTATATTAATTACTTTTTATTTTCTCTACATTTTTTGTGTTGGTTTGAGTTCAGTTTAAATTTTGTGAATATGTTCTCTTCTTTTGTATTCTATCATTATATATTTAAATTTGGTTAATCACATTGTCACATCTCTGTTAATTTTTTTTTATTATCTAAAGTAATTCGTTCAAGAGTCGTAGGAATGTATATTTCTTACATAATTGAAAACACAATATTAGAACAAATGCAAAGATTATTATATCTACTCGTTAAACTTGTTAACAGTCATGGTAGGAACATTATAGTTAAATTTATTAAATGAGCAACCTAATTAACAATATATAATTAAATCACATATGAATAGTATTAAAGAAGTTATAATATAAAATTGTAGAAGACATGCATTCCCACTACTTTAACTACGTTATCGAGAAACTGTCATTTCATGTATCTAAATACATGTATGCCAAAAAATAATGGTGAAAAAAATAAACATGATATAACATATACCATAATAATTTGGACCTCAAACATAAACTATATTAATCTCCAATTGTAATACTCTCTAATCGACTATTATAATCTACAAACTATAATAACCACGAATTATAGTAACTTAGCTACTTTGCACCTCAAACGTCCCATAAAATTTAAACGGATTGTTTTATTGTTAAAAAAATTAATTTTATATAGAATTGAGTTTTAAGATTTCACTCTAGTATATTATATTCATTTTTTAAAAAATGTAGATAATGTATGATCTACTCGACACAAAGTTAGATAATGTATGATCTACTCGACACAAAGTTAGATTTATATATGATACAACCTACCATTTTTAAATTAAATTTGTCTTCAAATAAATTTGTAAAAACATATTCGATATAAATTTGAACTGTATGGGATCTATCAAACACACGATAAGAAATTTAAAGGCTTATTATATACATTTGAATAATTAGGTGCCATGATATAAAAACAAATTCAGAAGTGTATAGACTACATTCTCAATCTTATATGAAATTATGCTCCTAACATCAAATTTTGGCTCCACCACGGTTAAAATTTTTGAGTGCAAAAGGAAAAAAGAAAAGAAATGTTTATAACAAAAGTGAAAATAATGGTAATCAAATGGTCACATTTTAGAAGTACATACATAAATGCAGGTTTATATCATATTTTGGTCTTTTAAACTTTGCCTTATTCAATTTTTTTGATTTCCTCCACTCCTAACAACATTTGTTTTAGTCACTTAACTTTAAAAGATTAAAGAACATATTTTCACTACAAGAAAAACTCATTACTATGACATTTATTTATATCACAAAAAAATGAAGAAAAAAAAAATGTCACGAAAGGGAAAAAACGTGTTTTTGGCAGGAAAAGATGGAAATTTTTAGAAAATATTTTTCGCGACAGTTATTTGATGTCATAAAATAGAAATAAAATAATATATTTAATATATGAAAAATAATAACTTTTTTAGGAATTTTTAACTTATTCCCTTCTCCCCTTTCCCTTTTCTTTCGTCTTTCTCCCCTTTTGCCTCCCCTTTCAGCTTTCTCCCCTTTCGCCTCCCAATCTCTGAACTCCATGAACTCCTTTCTCCAGACGACGACGAGGTCCATCATCGAAACTGCCCTCTCGTGGCCGTCTCCTCACTCTAACGCCGCTTGTACCTCTTCTACTACACGACGAACGGGCTACAACCACTCTTTGGAGTCTACCATTGAATCCTCCAAATCTTGCCTTTCTCAGATTTGTTCCACCTCTTATCCTCATTTTTAGAAGGCAATTGTAATTTCTTCATCTCTTATTATTACTATTGTTTTTTTATACCTCTCTTGTTGTTCTTTGTTTAGTTTCCAATTAAGGATGAATGTTAGTTTAGGTTTCTAAGAGAAAGGGTTGAAAGGTTTTGAATCGTTACTCTCTGTACTTTTCTTTAAGTAAGTCATCCTAAAAAAGATAGTTTTATAGCATTTGAATAAAGCTTTAGGCTATTTGCTAGATTGCAAAGTGGTTTCTGGACACAAAATTCCATGGTCGAAATTTAAGAAGAATCGAGTTCTTGCTCCTGTCAATTTTTTCAATTAAACTTGAAACTCAATTCTCAAATTTGATCCTTGTCAATAAGATTTCGTTAACTTTAACGAAATGATGAGATGACTTCTATGTTTGGATGACTAGGTTACCACATAAGATGATCACTCTTTAGGATTTTAATTTTAATTTAATTAAAGGCTAGGTGGTAAATTGATGTTTTATCATAGAACTCAAAAAGTCACTTTATCTTAAAAAAGATTGACGCATTGTCACTCTACTTCACTTATACAATTGATATGCATATTGCGCAATTCATCCATATACAAATCTTTTAGTGCCTCAAGTTTGATAACTTTTGTGACTCATTAAGGTGCTTTTTCTCTCTTCCTCCCAGTTCTTTCTTTTCTAGGTTTTATGATTCATTGTGGAAATATATATATGCAATTTTGTAGAGTTCATTTTCTACAAGGGTTGCACGTATAGTTTATTTTTTTTAGTTTATTTACCTTGTCATAGATGTTAACACCAATAATATATCAGTTCTATTTTTATTTTTCTTATTCTACTGCCGAGTCATTCTTCTAATTTGCTTCAAGATTTCAAGATTTCAATTTTAAAAAAAATAAAGCTATGGTGGAGAGTAAGGAAGGGGATGCGGGAGATTTAGGATTTTTGGAGAAAAAAAACCCAAAAATATACTTTTAAATTTGAGTTTTATTTTATTTAAGGGTGGTGTTGAGCTAAAATATTTAGACAGTAAATTAGTAAGATTTATGGATTCTTTATATCAATTTAATTAATATAATAAATCTTGACTCTAATCATCAAAATATAGAAACCATATCATAGTTAATGCAATTCTATTGACATGGACCAAAGTAAACTTTTTTCAAAAATTAGGAGACCAAAACAAGAAAACTTTAGAGACCAAAATAAAACAATATACAAAGTTTAGAAACCAATATAAGATTTTGATCGTAAATAAATCTACATTTTGAAATATAGAAACCAATGAAAAAAAAAATTCAAAAACAAAAATAAACATTTTAAAAATATAAAAAAAAAGAACCAAAATTAAAAAATAAATACTAAAATAACATTTAAGCCTAAATAAGTTATATAAAACTCTTACGTTTTATTTACTTTTTTAATATATAAATCTTAATATTAGACATTTGGTAGGGAAACTTTAAAGTAGATAATGTTTTTATAAATGGATGCATGATAACTCTTTAAAATGTTTCAATTCTACATTGAATGATATTAGCTTGTTTCGTACTTTAAACCAAATTGGCAATTGGGAGTAAGCAAAGGCAGTTGAAAAACCAAATGGAATGGTCGAAATCGGTCGAAACCGAAGAAAACCGACTGTTTTTCCTTTAAACCCAATGTGAATGGTTTTTTTTTTTGTCGAAACAAACCGAACCCGGACCGACTATGCCCAAAACCGATGGTTGTTCATACAATATTTAATGTTTAGCATGTTAGCAGGCAATTATCATCTATTAATAGCTAATTAATACATATGGGATGAAGGAATGATTGGCCAATTATACTGTAGCCAATATGTTTGATTATTTTTTGTCCTTATACACTTCCTTTCCATCTTTCTTCCTCTCTCTCTTCACTTTCTTCTCCAAGGCCCCATTTGTCTCTTCTTATGATCATTCATTTATGTTTCTCCTACAGTTCTTCACTTATCTCTTCCTTTTCTCTCTCTATTCTTTTTTTCAAATAAACGTTCTCATCCTCCTTTCGGAGCTCACTGATCAAATCCGACCCATCTTTCTGTATGCTCGATGGTCGACATTTGTCCAACCTCCAAACCCACCAGATAAAAACGACGAATTCAACACCAATGACGGTTTTTGTCCAAAACTAGCTTTGCTCCGTCAATGTTCACCTCTACTGACACAGAAAGAAGCAACTCATCTTTCTAGTGAGTGTTCTCAACATGTACCCTCATTAACTTTCTAATTCTGAACATATAAGGATATACTCTAAACCAAAAAAAATACATCTATGTGTGTTAAGAGATGAATGAGCTAAAAATACCTCGAAAAGGAAGTCCTCAGCTACAACAAGATCTTCACAGTCAGTTTTTTTTTTTTTGTTAACAACAATTAAACTGTAGCCTTTGTAACGTTTTTGGGTTACCAGATTTGTAACTCCAAATTAGCTTTTCCTTTGTGGTTTATAATATGAAAAATAATATAATTTAACTCATGACAAAAATCTGTGTGAAACATTGTATGTGAATGTGATTAGCAGTTCTTGAAATAGAAATAAAAAACTCATACCTTGGAGTGACAATGTAAGTGATTTCTCACCCAACCACTATAATCACTGGCTAGATCCTCTTTTCTTCTCCACCATTCTTTGATTGCATTTTTAGTTCCTCTAGTTGTACTTAACAAAATTGCCCTCCAAGTTTCACAATAAAGAAGACCAAAGTAGAGAATGGATTTCTATACGTTTTTGAGATTT

mRNA sequence

ATGTTTGATTATTTTTTGTCCTTATACACTTCCTTTCCATCTTTCTTCCTCTCTCTCTTCACTTTCTTCTCCAAGGCCCCATTTGTCTCTTCTTATGATCATTCATTTATGTTTCTCCTACAGTTCTTCACTTATCTCTTCCTTTTCTCTCTCTATTCTTTTTTTCAAATAAACGTTCTCATCCTCCTTTCGGAGCTCACTGATCAAATCCGACCCATCTTTCTGTATGCTCGATGGTCGACATTTGTCCAACCTCCAAACCCACCAGATAAAAACGACGAATTCAACACCAATGACGGTTTTTGTCCAAAACTAGCTTTGCTCCGTCAATGTTCACCTCTACTGACACAGAAAGAAGCAACTCATCTTTCTAGTGAGTGTTCTCAACATGTACCCTCATTAACTTTCTAA

Coding sequence (CDS)

ATGTTTGATTATTTTTTGTCCTTATACACTTCCTTTCCATCTTTCTTCCTCTCTCTCTTCACTTTCTTCTCCAAGGCCCCATTTGTCTCTTCTTATGATCATTCATTTATGTTTCTCCTACAGTTCTTCACTTATCTCTTCCTTTTCTCTCTCTATTCTTTTTTTCAAATAAACGTTCTCATCCTCCTTTCGGAGCTCACTGATCAAATCCGACCCATCTTTCTGTATGCTCGATGGTCGACATTTGTCCAACCTCCAAACCCACCAGATAAAAACGACGAATTCAACACCAATGACGGTTTTTGTCCAAAACTAGCTTTGCTCCGTCAATGTTCACCTCTACTGACACAGAAAGAAGCAACTCATCTTTCTAGTGAGTGTTCTCAACATGTACCCTCATTAACTTTCTAA

Protein sequence

MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVLILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEATHLSSECSQHVPSLTF
Homology
[Close]
BLAST of CsaV3_1G045810 vs. NCBI nr
Match: KGN66820.1 (hypothetical protein Csa_1G696530 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 3.7e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVL 60
           MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVL
Sbjct: 1   MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVL 60

Query: 61  ILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEA 120
           ILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEA
Sbjct: 61  ILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEA 120

Query: 121 THLSSECSQHVPSLTF 137
           THLSSECSQHVPSLTF
Sbjct: 121 THLSSECSQHVPSLTF 136

[Close]
BLAST of CsaV3_1G045810 vs. TrEMBL
Match: tr|A0A0A0LY70|A0A0A0LY70_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G696530 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.5e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVL 60
           MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVL
Sbjct: 1   MFDYFLSLYTSFPSFFLSLFTFFSKAPFVSSYDHSFMFLLQFFTYLFLFSLYSFFQINVL 60

Query: 61  ILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEA 120
           ILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEA
Sbjct: 61  ILLSELTDQIRPIFLYARWSTFVQPPNPPDKNDEFNTNDGFCPKLALLRQCSPLLTQKEA 120

Query: 121 THLSSECSQHVPSLTF 137
           THLSSECSQHVPSLTF
Sbjct: 121 THLSSECSQHVPSLTF 136

The following BLAST results are available for this feature:
BLAST of CsaV3_1G045810 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66820.13.7e-68100.00hypothetical protein Csa_1G696530 [Cucumis sativus][more]
BLAST of CsaV3_1G045810 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G045810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G045810 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LY70|A0A0A0LY70_CUCSA2.5e-68100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G696530 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G045810.1CsaV3_1G045810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G045810CSPI01G33920Wild cucumber (PI 183967)cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G045810Silver-seed gourdcarcucB0038
CsaV3_1G045810Cucumber (Gy14) v2cgybcucB001
CsaV3_1G045810Cucumber (Gy14) v1cgycucB513
CsaV3_1G045810Cucurbita moschata (Rifu)cmocucB0098
CsaV3_1G045810Cucurbita pepo (Zucchini)cpecucB0820
CsaV3_1G045810Bottle gourd (USVL1VR-Ls)cuclsiB089
CsaV3_1G045810Melon (DHL92) v3.5.1cucmeB045
CsaV3_1G045810Melon (DHL92) v3.6.1cucmedB042
CsaV3_1G045810Watermelon (Charleston Gray)cucwcgB083
CsaV3_1G045810Watermelon (Charleston Gray)cucwcgB091
CsaV3_1G045810Watermelon (97103) v1cucwmB051
CsaV3_1G045810Watermelon (97103) v1cucwmB099
CsaV3_1G045810Watermelon (97103) v2cucwmbB072
CsaV3_1G045810Watermelon (97103) v2cucwmbB079
CsaV3_1G045810Wax gourdcucwgoB112