CsaV3_1G045790 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G045790
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Transposase, MuDR, MULE transposase domain protein
Location	chr1 : 31619722 .. 31622658 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATATTCCAAAAATGTCCTTCTCTTAAATCTGCACTATTTTCTCTTCATCGTCCTCTTCCGTCATTTATTTGTTCTCTTTTTATCGTTTTTCCTTTTCATGGTTTTCTCTGTCCTTCAATCTCCACCGTTCTTGTTTTCTCCTATTCGCTACATCTCTTCTCCTCGTCTTTTTCTTCCTCTTCTCCTCCGTCTCTTCTTGTTCAGGTATGTATTTCTTCCCATATTCTTTTTTAAAGCCCTTCTTTTCTTTCTTTTTGAATCGATCATCATCTTTTCTTTCTTTTTGAGTCGATCATCGTCGTTTCTTTCTTTTTATGTGAATTGATCATCATCTATCAGAAATTCTCTTTTACCGAATGGCGCTTTGCAGAGTTTAATTTTTTTTTTTAATTTTGTATTAGCTTTTTACAGTAATTTGATGTACTTTTATTATATGTATTAGTTGACTAATACACTTACTACATGTTTTTTATTTTCTGAAAATGAATGCAGTTCATTGTAGTTATGGTTAAGCTTGCAGTCATTGTAGTTATGGTTAAGCTTGCAGTCATTGTATTTCATAGTGGTCAATGGGATGAGCAACAGTGCTATGTGGACTACAAAACGAATTGTGTTTTGATTGATGGAGTGACATCATCATTTGATTCTTTTGTGAACTTGATATGTACTGAAATTCAGATTGAGTCATGTATTGAACTTTCAGTTTTATTGTCTATATATAGGTAGTAATGGTGTTCAACATGTTCTTAAGATTGTTGAAAATAAAGATGTGACTTGGTTCTTGACATTGGTTAAGGATCAATCTACCCAATATCCTTTAGTTGCTCGTTCTATAGACACGATATTGGATGTATCAATTGGTTCTTCTTCTTCCATAGTTGAGGTTGATTTAGGATGTGAATTAGCAATTTTTAGAAATGTTGATATTACTAATACTAACAATGAGGTGGCTTTTAAGGAGAATGATTTGTTTTGTAGTAAAGAAATTTTGCTAAAGGCATTCCGCTCTATAACTTTCAAGACTAATTTTGAGTTTAAGACATTGAGATCTAATGAGTTGGGATGTAATGAAGATGACTGTCTTTGGTTTGTTAGAGCATCGCGTTATAAAAGAAGTGAATTATGGATGATTCGAAAAAATGTTAGTGATCATAGTTGCTCAATGATTGTTCATTCTTCTCATAAGCAAGCATCTTCAGAATTTTTTAGTCAATGTATGATTGATTATTTGAGGTATAGTTATTCTCATTCAATACCAAAAGATATCATTCACCATATGTGTATGAATTATGGAGTTTCTGTTAGTTATTATAAGGTTTGTAGAGCAAAAGAATCTGTTACGAAGTTGTTGAAAGGAGATGTCGATAATTCTTATGCTTTGATTCCAAAGTTCTTTTCAAAACTAAAAGAAATAAATCCAGGTTTGTTTTCTACCACTTAATTTAGTATCTTGTTCAATTTATTTCGTTTTTTTATACTTATTGCCAAATTTTGTATATCATTTTACTGAAATACCTATGATGAAGTATACTTATTGTATGATGTATGCACTTACTATTTAGTGCTTTTATTAATTTGATTGTTCTATTTTGTTCTTTTTTTGTAGGTTCATTTACTGCATATGAAATAGATGCAAATGGCCATTTCAAATATTGTTTCATGGCTATTGCATCATCAATTGAAGGTTGGACATATTGTAGACCAAATATAGCAGTTGATGGGACATTTTTAAAGTGTAAGTATGGTGAAACATTGTTAAGGCAGCAACTATGGATGGTAATAGTAAAATTTTCCCTCTTGTATTTAGTATAGTAGATTTAGAGAATGATGCTTCTTGGAAATGGTTTTTTCAACAATTAAAACTTTCTTTTGGAGATCGAGAGGGATTGGTTATTATTTCTGATAGACATATAAGTATTCCAAAAGGTGTTTTAGATGTGTTTCCATTGGTACAATATTGCGTTTGTGTAGAACATCTTTTGAAGAGTGTCAAGTTGTCATTTAAAGACTCTTTAATTGAAAAGCTTTTTCGTCAATGTGCATACTCTTATACAGTAGATGATTTCGAGTTGTATATGAGATGGATGGAGTCGATATACCCATCTTTTAAAGGATACCTTATGAAAGTTGGTTTTAAGAGATGGTCACGCACATACTCTAGAAAAAGAAGATATCAAATAATGACAACAAATATTTGTGAAAGCTTGAATTCTAAGTTGAAGATTGGTAGAGACTTACCAGTTGCATCCTTGTTTGAGGTCATTAGAGAGTTTCTTCAACAGTGGTTTTATGAGAAGAAAAGCAGCATCATGTTCAAAGAGTGTTTTGAGTTCTTGGGCTGAAGGACTAATAAGAAAGATAGTTGATGAATCACGAAGCTTCATTGTAAGTGTGTTTTATATATTTCTTTATAATAGTGAATTATTGATATACTGTATTAAAGTGTAACGATTATTTAATACACTGATGATATACCATAATTTTTTTGTTCAGGTTAATCCTGTGAGTGAAGTTGAATTTCAAGTAGTTGATGGAGGCAAAAAATTTTTAGTAAAGTTGAATTGTAGTAGTTGCAGTTGTCTTTTCTGGGATCTAGAAGAAATTCCACGTACTCATGCTCTTATTGTGATTCGTAGCCTTAATTTGGATCTTTATGCATTGTTTCACAATATTATTATGCTAGTGTATTGTCTGCAACTTATTGTGGATTAGTTCGTCCGAGTTGGCAACCATACTAATTAGAGTGTTATAGAGGTGAATGACCATGTATTGCCTCCAGTATATAGACGTTCAGCAGGAAGACCTCGAAAAAGAAGGATTCCTTCTATTTGTGAATTTTCAAAGAGCACAAAATGCAGTCGTTGTAAGAGAGTCAGTCATAATATTAGGACTGGTACATTTGAACCCATTTGAACAATTTAATTGTTTTAAAATT

mRNA sequence

ATGGCTATTGCATCATCAATTGAAGGTTGGACATATTGTAGACCAAATATAGCAGTTGATGGGACATTTTTAAAGTTAGATGATTTCGAGTTGTATATGAGATGGATGGAGTCGATATACCCATCTTTTAAAGGATACCTTATGAAAGTTGGTTTTAAGAGATGGTCACGCACATACTCTAGAAAAAGAAGATATCAAATAATGACAACAAATATTTGTGAAAGCTTGAATTCTAAGTTGAAGATTGGTAGAGACTTACCAGTTGCATCCTTGTTTGAGGTCATTAGAGAGTTTCTTCAACAGTGGTTTTATGAGAAGAAAAGCAGCATCATGTTCAAAGAGTGTTTTGAGTTCTTGGGCTGA

Coding sequence (CDS)

ATGGCTATTGCATCATCAATTGAAGGTTGGACATATTGTAGACCAAATATAGCAGTTGATGGGACATTTTTAAAGTTAGATGATTTCGAGTTGTATATGAGATGGATGGAGTCGATATACCCATCTTTTAAAGGATACCTTATGAAAGTTGGTTTTAAGAGATGGTCACGCACATACTCTAGAAAAAGAAGATATCAAATAATGACAACAAATATTTGTGAAAGCTTGAATTCTAAGTTGAAGATTGGTAGAGACTTACCAGTTGCATCCTTGTTTGAGGTCATTAGAGAGTTTCTTCAACAGTGGTTTTATGAGAAGAAAAGCAGCATCATGTTCAAAGAGTGTTTTGAGTTCTTGGGCTGA

Protein sequence

MAIASSIEGWTYCRPNIAVDGTFLKLDDFELYMRWMESIYPSFKGYLMKVGFKRWSRTYSRKRRYQIMTTNICESLNSKLKIGRDLPVASLFEVIREFLQQWFYEKKSSIMFKECFEFLG

Homology

[Close]

BLAST of CsaV3_1G045790 vs. NCBI nr
Match: XP_016900337.1 (PREDICTED: uncharacterized protein LOC107990862 [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 92/216 (42.59%), Postives = 100/216 (46.30%), Query Frame = 0


Query: 1   MAIASSIEGWTYCRPNIAVDGTFLK----------------------------------- 60
           MAIASSI+GW YCRPNI VDGTFLK                                   
Sbjct: 1   MAIASSIDGWRYCRPNIVVDGTFLKCKYGGTLLTAATMDGNSKIFPLAFSIVDSENDASW 60

Query: 61  ------------------------------------------------------------ 110
                                                                       
Sbjct: 61  KWFFEQLKLSFGDREGLIIIFDRHISIPKGVLDVCPTVQYCVYVEHLLKSVKLSFKDSLI 120

[Close]

BLAST of CsaV3_1G045790 vs. NCBI nr
Match: XP_022156574.1 (uncharacterized protein LOC111023450 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 2.0e-20
Identity = 48/83 (57.83%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 27  DDFELYMRWMESIYPSFKGYLMKVGFKRWSRTYSRKRRYQIMTTNICESLNSKLKIGRDL 86
           +DFEL MR MESIYP+ + YL  VGF++W+R ++++RRYQ++TTNI ESLN+ LK  RDL
Sbjct: 204 NDFELNMRLMESIYPTIREYLSNVGFEKWARAHTKERRYQMLTTNISESLNATLKESRDL 263

Query: 87  PVASLFEVIREFLQQWFYEKKSS 110
           PVASL + +R+ LQ+WFY++  S
Sbjct: 264 PVASLLDSVRQLLQRWFYDRSKS 286

[Close]

BLAST of CsaV3_1G045790 vs. NCBI nr
Match: XP_016903685.1 (PREDICTED: uncharacterized protein LOC107992354 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 5.3e-18
Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 33  MRWMESIYPSFKGYLMKVGFKRWSRTYSRKRRYQIMTTNICESLNSKLKIGRDLPVASLF 92
           MRWMES+YPS + YL KV F++W+R Y  ++ YQ+MTTNI ESLN+ LK  RDLPVA+L 
Sbjct: 1   MRWMESMYPSIRDYLSKVSFEKWARAYCTRKIYQMMTTNILESLNAVLKESRDLPVAALL 60

Query: 93  EVIREFLQQWFYEKK 108
           + IR+ LQ WFY+++
Sbjct: 61  DSIRQILQNWFYDRR 75

[Close]

BLAST of CsaV3_1G045790 vs. NCBI nr
Match: XP_011654398.1 (PREDICTED: uncharacterized protein LOC105435382 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 5.0e-16
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 36  MESIYPSFKGYLMKVGFKRWSRTYSRKRRYQIMTTNICESLNSKLKIGRDLPVASLFEVI 95
           MESIY   + YL  VGF+RWSR YSR+RRY +MTTN  ES+NS LK  R+L VASL + I
Sbjct: 1   MESIYTDIRSYLSNVGFERWSRAYSRRRRYNMMTTNPSESVNSVLKEDRNLVVASLLDGI 60

Query: 96  REFLQQWFYEKKSS 110
           REFLQ+WF++++ +
Sbjct: 61  REFLQKWFHDRREA 74

[Close]

BLAST of CsaV3_1G045790 vs. NCBI nr
Match: XP_022155934.1 (uncharacterized protein LOC111022933 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 5.0e-16
Identity = 59/181 (32.60%), Postives = 80/181 (44.20%), Query Frame = 0


Query: 1   MAIASSIEGWTYCRPNIAVDGTFL------------------------------------ 60
           MA+ +SIE W YCR NI++DGTFL                                    
Sbjct: 88  MALGASIESWRYCRHNISIDGTFLTSKYGGTLLTASTCDDNNQMFPLPFGIVDSENDVSW 147

Query: 61  -------------------------------------------KLDDFELYMRWMESIYP 103
                                                        +DFEL M+ MESIYP
Sbjct: 148 RWFFQNLKKQFWRSRRRYLLKNLKLSYNDSLIDRPFENCAKSYTTNDFELNMKLMESIYP 207

[Close]

BLAST of CsaV3_1G045790 vs. TrEMBL
Match: tr|A0A1S4DWH2|A0A1S4DWH2_CUCME (uncharacterized protein LOC107990862 OS=Cucumis melo OX=3656 GN=LOC107990862 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-33
Identity = 92/216 (42.59%), Postives = 100/216 (46.30%), Query Frame = 0


Query: 1   MAIASSIEGWTYCRPNIAVDGTFLK----------------------------------- 60
           MAIASSI+GW YCRPNI VDGTFLK                                   
Sbjct: 1   MAIASSIDGWRYCRPNIVVDGTFLKCKYGGTLLTAATMDGNSKIFPLAFSIVDSENDASW 60

Query: 61  ------------------------------------------------------------ 110
                                                                       
Sbjct: 61  KWFFEQLKLSFGDREGLIIIFDRHISIPKGVLDVCPTVQYCVYVEHLLKSVKLSFKDSLI 120

[Close]

BLAST of CsaV3_1G045790 vs. TrEMBL
Match: tr|A0A1S4E6R0|A0A1S4E6R0_CUCME (uncharacterized protein LOC107992354 OS=Cucumis melo OX=3656 GN=LOC107992354 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.5e-18
Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 33  MRWMESIYPSFKGYLMKVGFKRWSRTYSRKRRYQIMTTNICESLNSKLKIGRDLPVASLF 92
           MRWMES+YPS + YL KV F++W+R Y  ++ YQ+MTTNI ESLN+ LK  RDLPVA+L 
Sbjct: 1   MRWMESMYPSIRDYLSKVSFEKWARAYCTRKIYQMMTTNILESLNAVLKESRDLPVAALL 60

Query: 93  EVIREFLQQWFYEKK 108
           + IR+ LQ WFY+++
Sbjct: 61  DSIRQILQNWFYDRR 75

[Close]

BLAST of CsaV3_1G045790 vs. TrEMBL
Match: tr|A0A1S4E0D5|A0A1S4E0D5_CUCME (uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.7e-15
Identity = 41/86 (47.67%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 28  DFELYMRWMESIYPSFKGYLMKVGFKRWSRTYSRKRRYQIMTTNICESLNSKLKIGRDLP 87
           +FE YMR +E + PS +  L  VG  +W+R + R++RYQ++TTNI ES+NS LK  R+LP
Sbjct: 375 EFEYYMRQLEQLSPSMRHELEAVGRHKWARAFFRRKRYQVITTNISESMNSTLKEQRELP 434

Query: 88  VASLFEVIREFLQQWFYEKKSSIMFK 114
           V  L E IR  +Q+WFYE+++   F+
Sbjct: 435 VIGLLESIRSLIQKWFYERRTKWSFQ 460

[Close]

BLAST of CsaV3_1G045790 vs. TrEMBL
Match: tr|A0A1S3YP61|A0A1S3YP61_TOBAC (uncharacterized protein LOC107778086 OS=Nicotiana tabacum OX=4097 GN=LOC107778086 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 55/159 (34.59%), Postives = 72/159 (45.28%), Query Frame = 0


Query: 1   MAIASSIEGWTYCRPNIAVDGTFLK----------------------------------- 60
           +AI +SI GW YCRP + VDGTFLK                                   
Sbjct: 93  VAICTSISGWEYCRPVVVVDGTFLKSTYKEIMLTASTMDTAGTILPLAYAVVDSDYHIHT 152

Query: 61  ----LDDFELYMRWMESIYPSFKGYLMKVGFKRWSRTYSRKRRYQIMTTNICESLNSKLK 120
               LD+F   M  +E I    K YL  +G+ RWSR Y+   R   MT+NI ESLN   K
Sbjct: 153 RSYTLDEFNEMMSRIEEIDTRVKAYLYDIGYHRWSRVYATINRTWTMTSNIAESLNVVTK 212

[Close]

BLAST of CsaV3_1G045790 vs. TrEMBL
Match: tr|A0A1S3C300|A0A1S3C300_CUCME (uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-14
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 28  DFELYMRWMESIYPSFKGYLMKVGFKRWSRTYSRKRRYQIMTTNICESLNSKLKIGRDLP 87
           +FE YMR +E + PS +  L  VG  +W+R + +++RYQ++TTNI ES+NS LK  R+LP
Sbjct: 450 EFEYYMRQLEQLSPSMRHELEAVGRHKWARAFFKRKRYQVITTNISESMNSTLKEQRELP 509

Query: 88  VASLFEVIREFLQQWFYEKKSSIMFK 114
           V  L E IR  +Q+WFYE++    F+
Sbjct: 510 VIGLLESIRSLIQKWFYERRIKWSFQ 535

The following BLAST results are available for this feature:

BLAST of CsaV3_1G045790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900337.1	1.5e-33	42.59	PREDICTED: uncharacterized protein LOC107990862 [Cucumis melo]	[more]
XP_022156574.1	2.0e-20	57.83	uncharacterized protein LOC111023450 [Momordica charantia]	[more]
XP_016903685.1	5.3e-18	58.67	PREDICTED: uncharacterized protein LOC107992354 [Cucumis melo]	[more]
XP_011654398.1	5.0e-16	59.46	PREDICTED: uncharacterized protein LOC105435382 [Cucumis sativus]	[more]
XP_022155934.1	5.0e-16	32.60	uncharacterized protein LOC111022933 [Momordica charantia]	[more]

BLAST of CsaV3_1G045790 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G045790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G045790 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DWH2\|A0A1S4DWH2_CUCME	1.0e-33	42.59	uncharacterized protein LOC107990862 OS=Cucumis melo OX=3656 GN=LOC107990862 PE=...	[more]
tr\|A0A1S4E6R0\|A0A1S4E6R0_CUCME	3.5e-18	58.67	uncharacterized protein LOC107992354 OS=Cucumis melo OX=3656 GN=LOC107992354 PE=...	[more]
tr\|A0A1S4E0D5\|A0A1S4E0D5_CUCME	4.7e-15	47.67	uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=...	[more]
tr\|A0A1S3YP61\|A0A1S3YP61_TOBAC	1.1e-14	34.59	uncharacterized protein LOC107778086 OS=Nicotiana tabacum OX=4097 GN=LOC10777808...	[more]
tr\|A0A1S3C300\|A0A1S3C300_CUCME	2.4e-14	46.51	uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G045790.1	CsaV3_1G045790.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G045790	Silver-seed gourd	carcucB0038
CsaV3_1G045790	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G045790	Cucumber (Gy14) v1	cgycucB513
CsaV3_1G045790	Cucurbita moschata (Rifu)	cmocucB0098
CsaV3_1G045790	Cucurbita pepo (Zucchini)	cpecucB0820
CsaV3_1G045790	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G045790	Bottle gourd (USVL1VR-Ls)	cuclsiB089
CsaV3_1G045790	Melon (DHL92) v3.5.1	cucmeB045
CsaV3_1G045790	Melon (DHL92) v3.6.1	cucmedB042
CsaV3_1G045790	Watermelon (Charleston Gray)	cucwcgB083
CsaV3_1G045790	Watermelon (Charleston Gray)	cucwcgB091
CsaV3_1G045790	Watermelon (97103) v1	cucwmB051
CsaV3_1G045790	Watermelon (97103) v1	cucwmB099
CsaV3_1G045790	Watermelon (97103) v2	cucwmbB072
CsaV3_1G045790	Watermelon (97103) v2	cucwmbB079
CsaV3_1G045790	Wax gourd	cucwgoB112