CsaV3_1G045640 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G045640
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Trihelix transcription factor
Location	chr1 : 31464933 .. 31465605 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTCAAACTCTTTCACTAGCCAAAATGATCCAATTAAAAAACCCTAAAAACAACCCTTGTTTATCAACCCAAATCCTTGCTCCACAAGACCCAAATTCCTTCATCAATAATCATCCGAACCCTAAAAGTAAAGAGAAATTAGATCATGAGAGTGAAGACTTGGGAAAAAGATGGCCAAGAGATGAAGTGTTGGCTTTAGTAAATGTGAGGTGCAAAATGTACAACAACACCACCACCACCAACAATCAAGATGAAAGCCAAAGTGGTGGAGCGTCGTTAAAAGCTCCATTATGGGAGAGAATCTCACAAGGAATGCTTCAATTGGGTTACAAAAGAAGTGCCAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAGTACTTTAGAAAAACTAAAGATGTCAACAAGAAGAGATCTCTTGACTCAAGAACTTGCCCTTATTTCCACCAACTCTCTACATTGTACAATCAAGGTGGAGGGAATAATAATCCCCTGGAAAACTGCCCCAACGTGTCATCGGAAAACCACTCCGACCACTCCGAAAACCACCTTGCAACTTCGTCCTAGAGAATAATATTTAATTAGCACGGCTCAAATAATAATGTATTTTAAATTTGTATTTGAACCTTTTTTTTAGGGAAGAACATATTTTGCTGATTTTTTTCTT

mRNA sequence

ATGAAAATTCAAACTCTTTCACTAGCCAAAATGATCCAATTAAAAAACCCTAAAAACAACCCTTGTTTATCAACCCAAATCCTTGCTCCACAAGACCCAAATTCCTTCATCAATAATCATCCGAACCCTAAAAGTAAAGAGAAATTAGATCATGAGAGTGAAGACTTGGGAAAAAGATGGCCAAGAGATGAAGTGTTGGCTTTAGTAAATGTGAGGTGCAAAATGTACAACAACACCACCACCACCAACAATCAAGATGAAAGCCAAAGTGGTGGAGCGTCGTTAAAAGCTCCATTATGGGAGAGAATCTCACAAGGAATGCTTCAATTGGGTTACAAAAGAAGTGCCAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAGTACTTTAGAAAAACTAAAGATGTCAACAAGAAGAGATCTCTTGACTCAAGAACTTGCCCTTATTTCCACCAACTCTCTACATTGTACAATCAAGGTGGAGGGAATAATAATCCCCTGGAAAACTGCCCCAACGTGTCATCGGAAAACCACTCCGACCACTCCGAAAACCACCTTGCAACTTCGTCCTAG

Coding sequence (CDS)

ATGAAAATTCAAACTCTTTCACTAGCCAAAATGATCCAATTAAAAAACCCTAAAAACAACCCTTGTTTATCAACCCAAATCCTTGCTCCACAAGACCCAAATTCCTTCATCAATAATCATCCGAACCCTAAAAGTAAAGAGAAATTAGATCATGAGAGTGAAGACTTGGGAAAAAGATGGCCAAGAGATGAAGTGTTGGCTTTAGTAAATGTGAGGTGCAAAATGTACAACAACACCACCACCACCAACAATCAAGATGAAAGCCAAAGTGGTGGAGCGTCGTTAAAAGCTCCATTATGGGAGAGAATCTCACAAGGAATGCTTCAATTGGGTTACAAAAGAAGTGCCAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAGTACTTTAGAAAAACTAAAGATGTCAACAAGAAGAGATCTCTTGACTCAAGAACTTGCCCTTATTTCCACCAACTCTCTACATTGTACAATCAAGGTGGAGGGAATAATAATCCCCTGGAAAACTGCCCCAACGTGTCATCGGAAAACCACTCCGACCACTCCGAAAACCACCTTGCAACTTCGTCCTAG

Protein sequence

MKIQTLSLAKMIQLKNPKNNPCLSTQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNVRCKMYNNTTTTNNQDESQSGGASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPNVSSENHSDHSENHLATSS

Homology

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BLAST of CsaV3_1G045640 vs. NCBI nr
Match: XP_004142523.1 (PREDICTED: trihelix transcription factor GTL2 [Cucumis sativus] >KGN66801.1 hypothetical protein Csa_1G690370 [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 1.1e-86
Identity = 176/177 (99.44%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 14  LKNPKNNPCLSTQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNVRC 73
           +KNPKNNPCLSTQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNVRC
Sbjct: 442 IKNPKNNPCLSTQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNVRC 501

Query: 74  KMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKT 133
           KMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKT
Sbjct: 502 KMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKT 561

Query: 134 KDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPNVSSENHSDHSENHLATSS 191
           KDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPNVSSENHSDHSENHLATSS
Sbjct: 562 KDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPNVSSENHSDHSENHLATSS 618

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BLAST of CsaV3_1G045640 vs. NCBI nr
Match: XP_008462720.1 (PREDICTED: trihelix transcription factor GTL2 isoform X1 [Cucumis melo])

HSP 1 Score: 304.7 bits (779), Expect = 2.2e-79
Identity = 153/177 (86.44%), Postives = 156/177 (88.14%), Query Frame = 0


Query: 14  LKNPKNNPCLSTQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNVRC 73
           +KNPKNNPCLSTQIL  +DPNSFINNH NPKSKEKLDHESEDLGKRWPRDEVLALVNVRC
Sbjct: 448 IKNPKNNPCLSTQIL--EDPNSFINNHSNPKSKEKLDHESEDLGKRWPRDEVLALVNVRC 507

Query: 74  KMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKT 133
           KMYN               ASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKT
Sbjct: 508 KMYNNNTNNNHQDEGLSGGASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKT 567

Query: 134 KDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPNVSSENHSDHSENHLATSS 191
           KDVNKKRSLDSRTCPYFHQLSTLYNQGGGN+  LENCP VSSENHSDHSENHLATSS
Sbjct: 568 KDVNKKRSLDSRTCPYFHQLSTLYNQGGGNSTSLENCPIVSSENHSDHSENHLATSS 622

[Close]

BLAST of CsaV3_1G045640 vs. NCBI nr
Match: XP_023533993.1 (trihelix transcription factor GTL2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.1 bits (575), Expect = 1.0e-55
Identity = 122/172 (70.93%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 12  IQLKNPKNNPCLSTQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNV 71
           I  KNPK NPCLSTQILAPQDPNS IN+   P S        +DLGKRWPRDEVLALVNV
Sbjct: 363 IDPKNPK-NPCLSTQILAPQDPNSLINHSNPPPSSPTSPKPRDDLGKRWPRDEVLALVNV 422

Query: 72  RCKMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFR 131
           RC +Y                 S KAPLWERISQGMLQ+GYKRSAKRCKEKWENINKYFR
Sbjct: 423 RCSLYG--------NGVSDRDQSGKAPLWERISQGMLQMGYKRSAKRCKEKWENINKYFR 482

Query: 132 KTKDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPNVSSENHSDHSE 184
           KTKDVNKKR+LDSRTCPYFHQLSTLYNQGGGN +P E C  VSSEN S+ S+
Sbjct: 483 KTKDVNKKRALDSRTCPYFHQLSTLYNQGGGNEHP-EKCSIVSSENRSNQSK 524

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BLAST of CsaV3_1G045640 vs. NCBI nr
Match: XP_022961163.1 (trihelix transcription factor GTL2-like [Cucurbita moschata])

HSP 1 Score: 223.4 bits (568), Expect = 6.6e-55
Identity = 121/172 (70.35%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 12  IQLKNPKNNPCLSTQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNV 71
           I  KNPK NPCLST+ILAPQDPNS IN+   P S        +DLGKRWPRDEVLALVNV
Sbjct: 367 IDPKNPK-NPCLSTKILAPQDPNSLINHSNPPPSSPTSPKPRDDLGKRWPRDEVLALVNV 426

Query: 72  RCKMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFR 131
           RC +Y                 S KAPLWERISQGMLQ+GYKRSAKRCKEKWENINKYFR
Sbjct: 427 RCSLYG--------NGVGDRDQSGKAPLWERISQGMLQMGYKRSAKRCKEKWENINKYFR 486

Query: 132 KTKDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPNVSSENHSDHSE 184
           KTKDVNKKR+LDSRTCPYFHQLSTLYNQGGGN +P E C  VSSEN S+ S+
Sbjct: 487 KTKDVNKKRALDSRTCPYFHQLSTLYNQGGGNEHP-EKCSIVSSENLSNQSK 528

[Close]

BLAST of CsaV3_1G045640 vs. NCBI nr
Match: XP_022158201.1 (trihelix transcription factor GTL2 [Momordica charantia])

HSP 1 Score: 220.7 bits (561), Expect = 4.3e-54
Identity = 136/175 (77.71%), Postives = 140/175 (80.00%), Query Frame = 0


Query: 25  TQILAPQDPNSFINNHPNPKSKEKL-------DH-ESEDLGKRWPRDEVLALVNVRCKMY 84
           T+ILAPQDPNS    HP P S +KL       DH E +DLGKRWPRDEVLALVNVRC +Y
Sbjct: 464 TKILAPQDPNS----HPPPASLQKLPQNPKTRDHKELDDLGKRWPRDEVLALVNVRCSLY 523

Query: 85  N-------XXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKY 144
           N       XXXXXXXXXXXX   AS KAPLWERISQGMLQLGYKRSAKRCKEKWENINKY
Sbjct: 524 NNGVCGGGXXXXXXXXXXXXEQGASSKAPLWERISQGMLQLGYKRSAKRCKEKWENINKY 583

Query: 145 FRKTKDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPNVSSENHSDHSEN 185
           FRKTKDVNKKRSLDSRTCPYFHQLS LYNQGGG    LENCP VS ENHSDHSEN
Sbjct: 584 FRKTKDVNKKRSLDSRTCPYFHQLSNLYNQGGGIKR-LENCPAVSPENHSDHSEN 633

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BLAST of CsaV3_1G045640 vs. TAIR10
Match: AT5G28300.1 (Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 149.1 bits (375), Expect = 2.9e-36
Identity = 78/136 (57.35%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 24  STQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNVRCKMYNXXXXXX 83
           ST+ L P+      N +P P   +    +  DLGKRWP+DEVLAL+N+R  + N      
Sbjct: 434 STKTLKPK------NQNPKPPKSD----DKSDLGKRWPKDEVLALINIRRSISN-MNDDD 493

Query: 84  XXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLD 143
                    +S   PLWERIS+ ML++GYKRSAKRCKEKWENINKYFRKTKDVNKKR LD
Sbjct: 494 HKDENSLSTSSKAVPLWERISKKMLEIGYKRSAKRCKEKWENINKYFRKTKDVNKKRPLD 553

Query: 144 SRTCPYFHQLSTLYNQ 160
           SRTCPYFHQL+ LY+Q
Sbjct: 554 SRTCPYFHQLTALYSQ 558

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BLAST of CsaV3_1G045640 vs. TAIR10
Match: AT1G76890.2 (Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 118.2 bits (295), Expect = 5.4e-27
Identity = 58/110 (52.73%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 50  DHESEDLGKRWPRDEVLALVNVRCKMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQ 109
           +H       RWP+ EV AL+ +R  +                    K PLWE IS GM +
Sbjct: 388 NHSVSPSSSRWPKTEVEALIRIRKNL-----------EANYQENGTKGPLWEEISAGMRR 447

Query: 110 LGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQ 160
           LGY RSAKRCKEKWENINKYF+K K+ NKKR LDS+TCPYFHQL  LYN+
Sbjct: 448 LGYNRSAKRCKEKWENINKYFKKVKESNKKRPLDSKTCPYFHQLEALYNE 486

[Close]

BLAST of CsaV3_1G045640 vs. TAIR10
Match: AT1G76880.1 (Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 107.5 bits (267), Expect = 9.5e-24
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 59  RWPRDEVLALVNVRCKMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKR 118
           RWP+ E+ AL+ +R  + +                  K PLWE IS GM +LG+ R++KR
Sbjct: 408 RWPKVEIEALIKLRTNLDSKYQENGP-----------KGPLWEEISAGMRRLGFNRNSKR 467

Query: 119 CKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQ 160
           CKEKWENINKYF+K K+ NKKR  DS+TCPYFHQL  LY +
Sbjct: 468 CKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRE 497

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BLAST of CsaV3_1G045640 vs. TAIR10
Match: AT1G33240.1 (GT-2-like 1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-22
Identity = 53/111 (47.75%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 59  RWPRDEVLALVNVRCKMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKR 118
           RWP+ E+LAL+N+R  M                    K  LWE IS  M ++GY R+AKR
Sbjct: 435 RWPKAEILALINLRSGMEPRYQDNVP-----------KGLLWEEISTSMKRMGYNRNAKR 494

Query: 119 CKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLY-----NQGGGNN 165
           CKEKWENINKY++K K+ NKKR  D++TCPYFH+L  LY       GGG++
Sbjct: 495 CKEKWENINKYYKKVKESNKKRPQDAKTCPYFHRLDLLYRNKVLGSGGGSS 534

[Close]

BLAST of CsaV3_1G045640 vs. TAIR10
Match: AT5G47660.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-14
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 57  GKRWPRDEVLALVNVRCKMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSA 116
           G+RWP++EV AL++ R  +                    K  +W+ IS  M + GY+RSA
Sbjct: 301 GRRWPQEEVQALISSRSDVEEKTGIN-------------KGAIWDEISARMKERGYERSA 360

Query: 117 KRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLY 158
           K+CKEKWEN+NKY+R+  +  +K+   S+T  YF +L   Y
Sbjct: 361 KKCKEKWENMNKYYRRVTEGGQKQPEHSKTRSYFEKLGNFY 388

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BLAST of CsaV3_1G045640 vs. Swiss-Prot
Match: sp|Q8H181|GTL2_ARATH (Trihelix transcription factor GTL2 OS=Arabidopsis thaliana OX=3702 GN=At5g28300 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.1e-35
Identity = 78/136 (57.35%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 24  STQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNVRCKMYNXXXXXX 83
           ST+ L P+      N +P P   +    +  DLGKRWP+DEVLAL+N+R  + N      
Sbjct: 434 STKTLKPK------NQNPKPPKSD----DKSDLGKRWPKDEVLALINIRRSISN-MNDDD 493

Query: 84  XXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLD 143
                    +S   PLWERIS+ ML++GYKRSAKRCKEKWENINKYFRKTKDVNKKR LD
Sbjct: 494 HKDENSLSTSSKAVPLWERISKKMLEIGYKRSAKRCKEKWENINKYFRKTKDVNKKRPLD 553

Query: 144 SRTCPYFHQLSTLYNQ 160
           SRTCPYFHQL+ LY+Q
Sbjct: 554 SRTCPYFHQLTALYSQ 558

[Close]

BLAST of CsaV3_1G045640 vs. Swiss-Prot
Match: sp|Q39117|TGT2_ARATH (Trihelix transcription factor GT-2 OS=Arabidopsis thaliana OX=3702 GN=GT-2 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.7e-26
Identity = 58/110 (52.73%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 50  DHESEDLGKRWPRDEVLALVNVRCKMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQ 109
           +H       RWP+ EV AL+ +R  +                    K PLWE IS GM +
Sbjct: 388 NHSVSPSSSRWPKTEVEALIRIRKNL-----------EANYQENGTKGPLWEEISAGMRR 447

Query: 110 LGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQ 160
           LGY RSAKRCKEKWENINKYF+K K+ NKKR LDS+TCPYFHQL  LYN+
Sbjct: 448 LGYNRSAKRCKEKWENINKYFKKVKESNKKRPLDSKTCPYFHQLEALYNE 486

[Close]

BLAST of CsaV3_1G045640 vs. Swiss-Prot
Match: sp|Q9C882|GTL1_ARATH (Trihelix transcription factor GTL1 OS=Arabidopsis thaliana OX=3702 GN=GTL1 PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-21
Identity = 53/111 (47.75%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 59  RWPRDEVLALVNVRCKMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKR 118
           RWP+ E+LAL+N+R  M                    K  LWE IS  M ++GY R+AKR
Sbjct: 435 RWPKAEILALINLRSGMEPRYQDNVP-----------KGLLWEEISTSMKRMGYNRNAKR 494

Query: 119 CKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLY-----NQGGGNN 165
           CKEKWENINKY++K K+ NKKR  D++TCPYFH+L  LY       GGG++
Sbjct: 495 CKEKWENINKYYKKVKESNKKRPQDAKTCPYFHRLDLLYRNKVLGSGGGSS 534

[Close]

BLAST of CsaV3_1G045640 vs. Swiss-Prot
Match: sp|Q9LZS0|PTL_ARATH (Trihelix transcription factor PTL OS=Arabidopsis thaliana OX=3702 GN=PTL PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.2e-13
Identity = 49/132 (37.12%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 59  RWPRDEVLALVNVRCKMYNXXXXXXXXXXXXXXXASLKAPLWERISQGML-QLGYKRSAK 118
           RWPR E L L+ +R ++                 A+ K PLW+ +S+ M  + GY+RS K
Sbjct: 119 RWPRQETLTLLEIRSRL-----------DHKFKEANQKGPLWDEVSRIMSEEHGYQRSGK 178

Query: 119 RCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPN----- 178
           +C+EK+EN+ KY+RKTK+  K    D +   +F QL  LY    G++N L +CPN     
Sbjct: 179 KCREKFENLYKYYRKTKE-GKAGRQDGKHYRFFRQLEALY----GDSNNLVSCPNHNTQF 234

Query: 179 VSSENHSDHSEN 185
           +SS  H  H++N
Sbjct: 239 MSSALHGFHTQN 234

[Close]

BLAST of CsaV3_1G045640 vs. Swiss-Prot
Match: sp|Q9LU92|TGT4_ARATH (Trihelix transcription factor GT-4 OS=Arabidopsis thaliana OX=3702 GN=GT-4 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.6e-05
Identity = 33/115 (28.70%), Postives = 54/115 (46.96%), Query Frame = 0


Query: 50  DHESEDLGKR----WPRDEVLALVNVRCKMYNXXXXXXXXXXXXXXXASLKAPLWERISQ 109
           DHE     K+    W +DE   L+++R +M N               +     LWE+IS+
Sbjct: 41  DHEIIKAPKKRAETWAQDETRTLISLRREMDN-----------LFNTSKSNKHLWEQISK 100

Query: 110 GMLQLGYKRSAKRCKEKWENINKYFRKTKD-VNKKRSLDSRTCPYFHQLSTLYNQ 160
            M + G+ RS   C +KW NI K F+K K   +K  S  S    Y++++  ++ +
Sbjct: 101 KMREKGFDRSPSMCTDKWRNILKEFKKAKQHEDKATSGGSTKMSYYNEIEDIFRE 144

[Close]

BLAST of CsaV3_1G045640 vs. TrEMBL
Match: tr|A0A0A0M3J3|A0A0A0M3J3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690370 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 7.3e-87
Identity = 176/177 (99.44%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 14  LKNPKNNPCLSTQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNVRC 73
           +KNPKNNPCLSTQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNVRC
Sbjct: 442 IKNPKNNPCLSTQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNVRC 501

Query: 74  KMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKT 133
           KMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKT
Sbjct: 502 KMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKT 561

Query: 134 KDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPNVSSENHSDHSENHLATSS 191
           KDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPNVSSENHSDHSENHLATSS
Sbjct: 562 KDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPNVSSENHSDHSENHLATSS 618

[Close]

BLAST of CsaV3_1G045640 vs. TrEMBL
Match: tr|A0A1S3CHL0|A0A1S3CHL0_CUCME (trihelix transcription factor GTL2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501019 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.5e-79
Identity = 153/177 (86.44%), Postives = 156/177 (88.14%), Query Frame = 0


Query: 14  LKNPKNNPCLSTQILAPQDPNSFINNHPNPKSKEKLDHESEDLGKRWPRDEVLALVNVRC 73
           +KNPKNNPCLSTQIL  +DPNSFINNH NPKSKEKLDHESEDLGKRWPRDEVLALVNVRC
Sbjct: 448 IKNPKNNPCLSTQIL--EDPNSFINNHSNPKSKEKLDHESEDLGKRWPRDEVLALVNVRC 507

Query: 74  KMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKT 133
           KMYN               ASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKT
Sbjct: 508 KMYNNNTNNNHQDEGLSGGASLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKT 567

Query: 134 KDVNKKRSLDSRTCPYFHQLSTLYNQGGGNNNPLENCPNVSSENHSDHSENHLATSS 191
           KDVNKKRSLDSRTCPYFHQLSTLYNQGGGN+  LENCP VSSENHSDHSENHLATSS
Sbjct: 568 KDVNKKRSLDSRTCPYFHQLSTLYNQGGGNSTSLENCPIVSSENHSDHSENHLATSS 622

[Close]

BLAST of CsaV3_1G045640 vs. TrEMBL
Match: tr|A0A1R3JND0|A0A1R3JND0_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_15302 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.9e-44
Identity = 109/190 (57.37%), Postives = 124/190 (65.26%), Query Frame = 0


Query: 12  IQLKNPKNNPCLSTQILAPQDPNSF-INNHPNPK--------SKEKLDHESEDLGKRWPR 71
           +Q  NPK  P  S+  L PQ+PNS    + P+P         ++    ++ EDLGKRWPR
Sbjct: 465 LQNPNPK-TPIFSSSALVPQNPNSVNAQSKPSPSPLAKKAAAAQNPTSNDKEDLGKRWPR 524

Query: 72  DEVLALVNVRCKMYNXXXXXXXXXXXXXXXASLKAPLWERISQGMLQLGYKRSAKRCKEK 131
           DEVLAL+N+RC  YN               AS+KAPLWERISQGML+LGYKRSAKRCKEK
Sbjct: 525 DEVLALINLRCSFYN--NGDHDKEGISGGAASIKAPLWERISQGMLELGYKRSAKRCKEK 584

Query: 132 WENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQG---GGNNNPLENCPNVSSENHS 190
           WENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQG     +  P    P    ENHS
Sbjct: 585 WENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQGTLIAPSEAPKNRPP--MPENHS 644

[Close]

BLAST of CsaV3_1G045640 vs. TrEMBL
Match: tr|A0A1R3GBB9|A0A1R3GBB9_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27266 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.2e-42
Identity = 97/144 (67.36%), Postives = 104/144 (72.22%), Query Frame = 0


Query: 42  NPKSKEKLDHESEDLGKRWPRDEVLALVNVRCKMYNXXXXXXXXXXXXXXXASLKAPLWE 101
           NP S +K     EDLGKRWPRDEVLAL+N+RC  YN               AS+KAPLWE
Sbjct: 493 NPTSNDK-----EDLGKRWPRDEVLALINLRCSFYN--NGDHDKEGISGGAASIKAPLWE 552

Query: 102 RISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQGG 161
           RISQGML+LGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQG 
Sbjct: 553 RISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQG- 612

Query: 162 GNNNPLENCPNVSSENHSDHSENH 186
                    P+ + EN S   ENH
Sbjct: 613 -----TLIAPSEAPENRSPMLENH 623

[Close]

BLAST of CsaV3_1G045640 vs. TrEMBL
Match: tr|A0A1U8LF53|A0A1U8LF53_GOSHI (trihelix transcription factor GTL2 isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107926820 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.1e-41
Identity = 94/144 (65.28%), Postives = 104/144 (72.22%), Query Frame = 0


Query: 42  NPKSKEKLDHESEDLGKRWPRDEVLALVNVRCKMYNXXXXXXXXXXXXXXXASLKAPLWE 101
           NP S EK     EDLGKRWPRDEVLAL+N+RC +YN                ++KAPLWE
Sbjct: 513 NPTSNEK-----EDLGKRWPRDEVLALINLRCSLYN-------NGDHEKEGTAIKAPLWE 572

Query: 102 RISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQGG 161
           RISQGML+LGYKRSAKRCKEKWENINKYFRKTKD+NKKRSLDSRTCPYFHQLSTLY+QG 
Sbjct: 573 RISQGMLELGYKRSAKRCKEKWENINKYFRKTKDINKKRSLDSRTCPYFHQLSTLYSQG- 632

Query: 162 GNNNPLENCPNVSSENHSDHSENH 186
                    P+   EN S  +ENH
Sbjct: 633 -----TLIAPSDGPENRSPLAENH 638

The following BLAST results are available for this feature:

BLAST of CsaV3_1G045640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142523.1	1.1e-86	99.44	PREDICTED: trihelix transcription factor GTL2 [Cucumis sativus] >KGN66801.1 hypo...	[more]
XP_008462720.1	2.2e-79	86.44	PREDICTED: trihelix transcription factor GTL2 isoform X1 [Cucumis melo]	[more]
XP_023533993.1	1.0e-55	70.93	trihelix transcription factor GTL2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022961163.1	6.6e-55	70.35	trihelix transcription factor GTL2-like [Cucurbita moschata]	[more]
XP_022158201.1	4.3e-54	77.71	trihelix transcription factor GTL2 [Momordica charantia]	[more]

BLAST of CsaV3_1G045640 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28300.1	2.9e-36	57.35	Duplicated homeodomain-like superfamily protein	[more]
AT1G76890.2	5.4e-27	52.73	Duplicated homeodomain-like superfamily protein	[more]
AT1G76880.1	9.5e-24	50.50	Duplicated homeodomain-like superfamily protein	[more]
AT1G33240.1	1.4e-22	47.75	GT-2-like 1	[more]
AT5G47660.1	1.4e-14	37.62	Homeodomain-like superfamily protein	[more]

BLAST of CsaV3_1G045640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8H181\|GTL2_ARATH	5.1e-35	57.35	Trihelix transcription factor GTL2 OS=Arabidopsis thaliana OX=3702 GN=At5g28300 ...	[more]
sp\|Q39117\|TGT2_ARATH	9.7e-26	52.73	Trihelix transcription factor GT-2 OS=Arabidopsis thaliana OX=3702 GN=GT-2 PE=2 ...	[more]
sp\|Q9C882\|GTL1_ARATH	2.5e-21	47.75	Trihelix transcription factor GTL1 OS=Arabidopsis thaliana OX=3702 GN=GTL1 PE=1 ...	[more]
sp\|Q9LZS0\|PTL_ARATH	7.2e-13	37.12	Trihelix transcription factor PTL OS=Arabidopsis thaliana OX=3702 GN=PTL PE=2 SV...	[more]
sp\|Q9LU92\|TGT4_ARATH	5.6e-05	28.70	Trihelix transcription factor GT-4 OS=Arabidopsis thaliana OX=3702 GN=GT-4 PE=2 ...	[more]

BLAST of CsaV3_1G045640 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M3J3\|A0A0A0M3J3_CUCSA	7.3e-87	99.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690370 PE=4 SV=1	[more]
tr\|A0A1S3CHL0\|A0A1S3CHL0_CUCME	1.5e-79	86.44	trihelix transcription factor GTL2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
tr\|A0A1R3JND0\|A0A1R3JND0_9ROSI	5.9e-44	57.37	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_15302 PE=4 SV=1	[more]
tr\|A0A1R3GBB9\|A0A1R3GBB9_COCAP	7.2e-42	67.36	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27266 PE=4 ...	[more]
tr\|A0A1U8LF53\|A0A1U8LF53_GOSHI	6.1e-41	65.28	trihelix transcription factor GTL2 isoform X1 OS=Gossypium hirsutum OX=3635 GN=L...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017877	Myb-like_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G045640.1	CsaV3_1G045640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 60..133 e-value: 2.7E-24 score: 86.9
None	No IPR available	PFAM	PF13837	Myb_DNA-bind_4	coord: 58..155 e-value: 3.7E-19 score: 68.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..190
None	No IPR available	PANTHER	PTHR21654:SF22	TRIHELIX TRANSCRIPTION FACTOR GTL2	coord: 13..184
None	No IPR available	PANTHER	PTHR21654	FAMILY NOT NAMED	coord: 13..184
None	No IPR available	CDD	cd12203	GT1	coord: 58..134 e-value: 2.44744E-22 score: 85.4095
IPR017877	Myb-like domain	PROSITE	PS50090	MYB_LIKE	coord: 59..127 score: 6.179

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G045640	CmaCh10G010060	Cucurbita maxima (Rimu)	cmacucB0072
CsaV3_1G045640	CmaCh11G009870	Cucurbita maxima (Rimu)	cmacucB0099
CsaV3_1G045640	CmoCh10G010610	Cucurbita moschata (Rifu)	cmocucB0059
CsaV3_1G045640	CmoCh11G010060	Cucurbita moschata (Rifu)	cmocucB0090
CsaV3_1G045640	Cp4.1LG04g01830	Cucurbita pepo (Zucchini)	cpecucB0799
CsaV3_1G045640	Cp4.1LG05g08520	Cucurbita pepo (Zucchini)	cpecucB0874
CsaV3_1G045640	Carg06122	Silver-seed gourd	carcucB0016
CsaV3_1G045640	Carg16485	Silver-seed gourd	carcucB0949
CsaV3_1G045640	Cla003748	Watermelon (97103) v1	cucwmB101
CsaV3_1G045640	MELO3C024673	Melon (DHL92) v3.5.1	cucmeB045
CsaV3_1G045640	ClCG06G009170	Watermelon (Charleston Gray)	cucwcgB091
CsaV3_1G045640	Lsi06G008040	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G045640	MELO3C024673.2	Melon (DHL92) v3.6.1	cucmedB042
CsaV3_1G045640	Cla97C06G118940	Watermelon (97103) v2	cucwmbB079
CsaV3_1G045640	Bhi02G001010	Wax gourd	cucwgoB099

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G045640	Watermelon (97103) v2	cucwmbB072
CsaV3_1G045640	Wax gourd	cucwgoB112
CsaV3_1G045640	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G045640	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G045640	Bottle gourd (USVL1VR-Ls)	cuclsiB089
CsaV3_1G045640	Watermelon (Charleston Gray)	cucwcgB083