CsaV3_1G045630 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G045630
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	trihelix transcription factor GTL2 isoform X2
Location	chr1 : 31463645 .. 31464612 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATCATCATATTATTCATCATGATCAATGGAGCAATGATGAGCTTCTTGCCCTCCTTAGAATCAGATCTAACATTGAAAATTGCTTCCCGAATCCACTTGGGAACATGTTTCAAGGTCATCAAATTCAAACCCCTAAATTAAACAAAATTTTTGGCTTATTATTATTATCACCACTCTTCATCATTTGTTTAATTATGTTCTGTTTTTCTAATTAATTAAGCATACTCTTTGCTCTTTTGCGTTTCTATTTGGTGGGCTAGTTTAATTGAATTGTACTACATAGAGAGAGAAATGATATTATGATATTATGTTTTTTTCTCCTTGGGAAATACAATAATGTGTGAGGTGTATAGTTTTAATATACACTTAAAAGAGTAGGAATAAATGCAGGCATATATGTTGGTTGCATTTAGTTTTATTTTATTTTCTTTAATTTAATTATGGTGGGTGCAGGAAGTTGGGAGAGGTGGGTTTTAGAAGGACTGCAGACAAGTGTAAAGAGAAATTTGAAGAAGAGAGTAGATATTTCAACCACATTAACTACAATAAAAATTGTAGGTTCCTCACTCACGAGCTGAATTATAATCATCATCCAAATCAAGATCAAGATCAAGATCACCTTCTCCTGATTCATGAAGGGAATGGGAAACCAGACGACGGTGGCCCCACCCTCGTTGTGGTACCAGAAGAAGGTGAAGAAGAAAACCAAGATAAAGATGGAGAACTTCATGATGATGACGAAGAAGAAGATTTGAGAAATGACGAAATGAGACCGGGGAGGAATGAGGAAGAACGGAACGAAAGTAGTAGATCAAGTAGTTGCCAGAAGAGTAAGAAGAAGAGGAAAATGATGAGGCAAAAGGAATTTGAATTGTTGAAGGGTTATTGTGAGGAAATAGTGAAGAAAATGATGATACAACAAGAGGAAATTCACTCAACAGCTTTTTACAAGACATGTTGA

mRNA sequence

ATGGAGGATCATCATATTATTCATCATGATCAATGGAGCAATGATGAGCTTCTTGCCCTCCTTAGAATCAGATCTAACATTGAAAATTGCTTCCCGAATCCACTTGGGAACATGTTTCAAGGGAATGGGAAACCAGACGACGGTGGCCCCACCCTCGTTGTGGTACCAGAAGAAGGTGAAGAAGAAAACCAAGATAAAGATGGAGAACTTCATGATGATGACGAAGAAGAAGATTTGAGAAATGACGAAATGAGACCGGGGAGGAATGAGGAAGAACGGAACGAAAGTAGTAGATCAAGTAGTTGCCAGAAGAGTAAGAAGAAGAGGAAAATGATGAGGCAAAAGGAATTTGAATTGTTGAAGGGTTATTGTGAGGAAATAGTGAAGAAAATGATGATACAACAAGAGGAAATTCACTCAACAGCTTTTTACAAGACATGTTGA

Coding sequence (CDS)

ATGGAGGATCATCATATTATTCATCATGATCAATGGAGCAATGATGAGCTTCTTGCCCTCCTTAGAATCAGATCTAACATTGAAAATTGCTTCCCGAATCCACTTGGGAACATGTTTCAAGGGAATGGGAAACCAGACGACGGTGGCCCCACCCTCGTTGTGGTACCAGAAGAAGGTGAAGAAGAAAACCAAGATAAAGATGGAGAACTTCATGATGATGACGAAGAAGAAGATTTGAGAAATGACGAAATGAGACCGGGGAGGAATGAGGAAGAACGGAACGAAAGTAGTAGATCAAGTAGTTGCCAGAAGAGTAAGAAGAAGAGGAAAATGATGAGGCAAAAGGAATTTGAATTGTTGAAGGGTTATTGTGAGGAAATAGTGAAGAAAATGATGATACAACAAGAGGAAATTCACTCAACAGCTTTTTACAAGACATGTTGA

Protein sequence

MEDHHIIHHDQWSNDELLALLRIRSNIENCFPNPLGNMFQGNGKPDDGGPTLVVVPEEGEEENQDKDGELHDDDEEEDLRNDEMRPGRNEEERNESSRSSSCQKSKKKRKMMRQKEFELLKGYCEEIVKKMMIQQEEIHSTAFYKTC

Homology

[Close]

BLAST of CsaV3_1G045630 vs. NCBI nr
Match: XP_004142523.1 (PREDICTED: trihelix transcription factor GTL2 [Cucumis sativus] >KGN66801.1 hypothetical protein Csa_1G690370 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 5.0e-10
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   MEDHHIIHHDQWSNDELLALLRIRSNIENCFP 33
           MEDHHIIHHDQWSNDELLALLRIRSNIENCFP
Sbjct: 114 MEDHHIIHHDQWSNDELLALLRIRSNIENCFP 145

[Close]

BLAST of CsaV3_1G045630 vs. NCBI nr
Match: XP_008462720.1 (PREDICTED: trihelix transcription factor GTL2 isoform X1 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   MEDHHIIHHDQWSNDELLALLRIRSNIENCFP 33
           MEDHHIIH+DQWSNDELLALLRIRSNIENCFP
Sbjct: 121 MEDHHIIHYDQWSNDELLALLRIRSNIENCFP 152

[Close]

BLAST of CsaV3_1G045630 vs. NCBI nr
Match: XP_016902909.1 (PREDICTED: trihelix transcription factor GTL2 isoform X2 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   MEDHHIIHHDQWSNDELLALLRIRSNIENCFP 33
           MEDHHIIH+DQWSNDELLALLRIRSNIENCFP
Sbjct: 121 MEDHHIIHYDQWSNDELLALLRIRSNIENCFP 152

[Close]

BLAST of CsaV3_1G045630 vs. NCBI nr
Match: XP_023531521.1 (trihelix transcription factor GTL2 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.6 bits (161), Expect = 8.0e-08
Identity = 88/155 (56.77%), Postives = 95/155 (61.29%), Query Frame = 0


Query: 1   MEDHH-IIHHDQWSNDELLALLRIRSNIENCFPNPLGNMFQGNGK---------PDXXXX 60
           +EDHH   HH+QWSNDELLALLRIRSNI+NCFP           K         PD    
Sbjct: 83  LEDHHRHNHHNQWSNDELLALLRIRSNIDNCFPESTWEHVSRYRKLGEVGFTRTPD---- 142

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 143 -KCKEKFEDEKTEDRGAVVVVPEEAKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 202

Query: 121 XXXXXXFELLKGYCEEIVKKMMIQQEEIHSTAFYK 146
           XXXX  FE+LKGYCE+IVK MMIQQEEIHS   ++
Sbjct: 203 XXXXREFEVLKGYCEDIVKNMMIQQEEIHSKLLHE 232

[Close]

BLAST of CsaV3_1G045630 vs. NCBI nr
Match: XP_023531522.1 (trihelix transcription factor GTL2 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-07
Identity = 89/154 (57.79%), Postives = 97/154 (62.99%), Query Frame = 0


Query: 1   MEDHH-IIHHDQWSNDELLALLRIRSNIENCFP--------NPLGNMFQGNGKPDXXXXX 60
           +EDHH   HH+QWSNDELLALLRIRSNI+NCFP          LG +      PD     
Sbjct: 83  LEDHHRHNHHNQWSNDELLALLRIRSNIDNCFPESTWEHVSRKLGEV-GFTRTPD----- 142

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 143 KCKEKFEDEKTEDRGAVVVVPEEAKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 202

Query: 121 XXXXXFELLKGYCEEIVKKMMIQQEEIHSTAFYK 146
           XXX  FE+LKGYCE+IVK MMIQQEEIHS   ++
Sbjct: 203 XXXREFEVLKGYCEDIVKNMMIQQEEIHSKLLHE 230

[Close]

BLAST of CsaV3_1G045630 vs. TrEMBL
Match: tr|A0A0A0M3J3|A0A0A0M3J3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690370 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.3e-10
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   MEDHHIIHHDQWSNDELLALLRIRSNIENCFP 33
           MEDHHIIHHDQWSNDELLALLRIRSNIENCFP
Sbjct: 114 MEDHHIIHHDQWSNDELLALLRIRSNIENCFP 145

[Close]

BLAST of CsaV3_1G045630 vs. TrEMBL
Match: tr|A0A1S3CHL0|A0A1S3CHL0_CUCME (trihelix transcription factor GTL2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501019 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   MEDHHIIHHDQWSNDELLALLRIRSNIENCFP 33
           MEDHHIIH+DQWSNDELLALLRIRSNIENCFP
Sbjct: 121 MEDHHIIHYDQWSNDELLALLRIRSNIENCFP 152

[Close]

BLAST of CsaV3_1G045630 vs. TrEMBL
Match: tr|A0A1S4E3V6|A0A1S4E3V6_CUCME (trihelix transcription factor GTL2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501019 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   MEDHHIIHHDQWSNDELLALLRIRSNIENCFP 33
           MEDHHIIH+DQWSNDELLALLRIRSNIENCFP
Sbjct: 121 MEDHHIIHYDQWSNDELLALLRIRSNIENCFP 152

The following BLAST results are available for this feature:

BLAST of CsaV3_1G045630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142523.1	5.0e-10	100.00	PREDICTED: trihelix transcription factor GTL2 [Cucumis sativus] >KGN66801.1 hypo...	[more]
XP_008462720.1	2.5e-09	96.88	PREDICTED: trihelix transcription factor GTL2 isoform X1 [Cucumis melo]	[more]
XP_016902909.1	2.5e-09	96.88	PREDICTED: trihelix transcription factor GTL2 isoform X2 [Cucumis melo]	[more]
XP_023531521.1	8.0e-08	56.77	trihelix transcription factor GTL2 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023531522.1	1.0e-07	57.79	trihelix transcription factor GTL2 isoform X4 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_1G045630 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G045630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G045630 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M3J3\|A0A0A0M3J3_CUCSA	3.3e-10	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690370 PE=4 SV=1	[more]
tr\|A0A1S3CHL0\|A0A1S3CHL0_CUCME	1.6e-09	96.88	trihelix transcription factor GTL2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
tr\|A0A1S4E3V6\|A0A1S4E3V6_CUCME	1.6e-09	96.88	trihelix transcription factor GTL2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G045630.1	CsaV3_1G045630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..102
None	No IPR available	PANTHER	PTHR21654:SF22	TRIHELIX TRANSCRIPTION FACTOR GTL2	coord: 64..140
None	No IPR available	PANTHER	PTHR21654	FAMILY NOT NAMED	coord: 64..140
None	No IPR available	PANTHER	PTHR21654	FAMILY NOT NAMED	coord: 8..33
None	No IPR available	PANTHER	PTHR21654:SF22	TRIHELIX TRANSCRIPTION FACTOR GTL2	coord: 8..33

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G045630	CSPI01G33700	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G045630	Cucsa.291770	Cucumber (Gy14) v1	cgycucB450
CsaV3_1G045630	CsGy1G032300	Cucumber (Gy14) v2	cgybcucB001

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_1G045630	CsaV3_UNG002050	Cucumber (Chinese Long) v3	cuccucB043

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G045630	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G045630	Bottle gourd (USVL1VR-Ls)	cuclsiB089
CsaV3_1G045630	Melon (DHL92) v3.5.1	cucmeB045
CsaV3_1G045630	Melon (DHL92) v3.6.1	cucmedB042
CsaV3_1G045630	Watermelon (Charleston Gray)	cucwcgB083
CsaV3_1G045630	Watermelon (Charleston Gray)	cucwcgB091
CsaV3_1G045630	Watermelon (97103) v1	cucwmB101
CsaV3_1G045630	Watermelon (97103) v2	cucwmbB072
CsaV3_1G045630	Watermelon (97103) v2	cucwmbB079
CsaV3_1G045630	Wax gourd	cucwgoB112
CsaV3_1G045630	Silver-seed gourd	carcucB0016
CsaV3_1G045630	Silver-seed gourd	carcucB0949
CsaV3_1G045630	Cucurbita maxima (Rimu)	cmacucB0072
CsaV3_1G045630	Cucurbita maxima (Rimu)	cmacucB0099
CsaV3_1G045630	Cucurbita moschata (Rifu)	cmocucB0059
CsaV3_1G045630	Cucurbita moschata (Rifu)	cmocucB0090
CsaV3_1G045630	Cucurbita pepo (Zucchini)	cpecucB0799
CsaV3_1G045630	Cucurbita pepo (Zucchini)	cpecucB0874