CsaV3_1G045500 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G045500
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Retrotransposon protein
Location	chr1 : 31307043 .. 31307246 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGTTGTCTACTGCATAATCTAATAAATCGAGAGATAACGAACGTCAAAATTCTTAAAGACGTCGATGAGGTTGACTTGAACTACGCAACGACTGAAGGTAACAACATAAACTACAATGAGGCCTCAAACAAATGGAGTCAATGGAGGGATGACCTCGTCGAGGCGATGTTCAATGGATGGCAGTTGTGTAATCACTAG

mRNA sequence

ATGGCATGTTGTCTACTGCATAATCTAATAAATCGAGAGATAACGAACGTCAAAATTCTTAAAGACGTCGATGAGGTTGACTTGAACTACGCAACGACTGAAGGTAACAACATAAACTACAATGAGGCCTCAAACAAATGGAGTCAATGGAGGGATGACCTCGTCGAGGCGATGTTCAATGGATGGCAGTTGTGTAATCACTAG

Coding sequence (CDS)

ATGGCATGTTGTCTACTGCATAATCTAATAAATCGAGAGATAACGAACGTCAAAATTCTTAAAGACGTCGATGAGGTTGACTTGAACTACGCAACGACTGAAGGTAACAACATAAACTACAATGAGGCCTCAAACAAATGGAGTCAATGGAGGGATGACCTCGTCGAGGCGATGTTCAATGGATGGCAGTTGTGTAATCACTAG

Protein sequence

MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFNGWQLCNH

Homology

[Close]

BLAST of CsaV3_1G045500 vs. NCBI nr
Match: KGN66784.1 (hypothetical protein Csa_1G690220 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-32
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
          MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN
Sbjct: 1  MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60

Query: 61 GWQLCNH 68
          GWQLCNH
Sbjct: 61 GWQLCNH 67

[Close]

BLAST of CsaV3_1G045500 vs. NCBI nr
Match: XP_016902382.1 (PREDICTED: uncharacterized protein LOC107991657 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
           +ACCLLHNLINRE+TN  I  +++EVD  +ATT  ++I+Y E SN+WSQWRDDL E MF 
Sbjct: 86  LACCLLHNLINREMTNFDIEDNINEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFT 145

Query: 61  GWQLCN 67
            W+L N
Sbjct: 146 EWELRN 151

[Close]

BLAST of CsaV3_1G045500 vs. NCBI nr
Match: XP_016898979.1 (PREDICTED: uncharacterized protein LOC107990391 [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-15
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
           +ACCLLHNLINRE+T   I+ D+DEVD  +AT+  ++I+Y E SN+W+QWRDDL E MF+
Sbjct: 87  LACCLLHNLINREMTTFDIVDDIDEVDFTHATSVAHDIHYIETSNEWTQWRDDLAEEMFS 146

Query: 61  GWQLCN 67
            W L N
Sbjct: 147 EWVLRN 152

[Close]

BLAST of CsaV3_1G045500 vs. NCBI nr
Match: XP_016903646.1 (PREDICTED: uncharacterized protein LOC107992265 [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-15
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
           +ACCLLHNLINRE+TN  I  ++DEVD  +AT   ++I+Y E SN+WSQWRDDL E MF 
Sbjct: 221 LACCLLHNLINREMTNFDIEDNIDEVDSTHATIAADDIHYIETSNEWSQWRDDLAEEMFT 280

Query: 61  GWQLCN 67
            W+L N
Sbjct: 281 EWELRN 286

[Close]

BLAST of CsaV3_1G045500 vs. NCBI nr
Match: XP_008457266.1 (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 9.0e-15
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
           + CCLLHNLINRE+TN  I  ++DEVD  +AT   ++I+Y E SN+WSQWRDDL E MF+
Sbjct: 238 LTCCLLHNLINREMTNFDIQDNIDEVDSTHATIATDDIHYIETSNEWSQWRDDLAEEMFS 297

Query: 61  GWQLCN 67
            W+L N
Sbjct: 298 EWELRN 303

[Close]

BLAST of CsaV3_1G045500 vs. TrEMBL
Match: tr|A0A0A0M0G4|A0A0A0M0G4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690220 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-32
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
          MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN
Sbjct: 1  MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60

Query: 61 GWQLCNH 68
          GWQLCNH
Sbjct: 61 GWQLCNH 67

[Close]

BLAST of CsaV3_1G045500 vs. TrEMBL
Match: tr|A0A1S4E2C9|A0A1S4E2C9_CUCME (uncharacterized protein LOC107991657 OS=Cucumis melo OX=3656 GN=LOC107991657 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
           +ACCLLHNLINRE+TN  I  +++EVD  +ATT  ++I+Y E SN+WSQWRDDL E MF 
Sbjct: 86  LACCLLHNLINREMTNFDIEDNINEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFT 145

Query: 61  GWQLCN 67
            W+L N
Sbjct: 146 EWELRN 151

[Close]

BLAST of CsaV3_1G045500 vs. TrEMBL
Match: tr|A0A1S4DSL6|A0A1S4DSL6_CUCME (uncharacterized protein LOC107990391 OS=Cucumis melo OX=3656 GN=LOC107990391 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-15
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
           +ACCLLHNLINRE+T   I+ D+DEVD  +AT+  ++I+Y E SN+W+QWRDDL E MF+
Sbjct: 87  LACCLLHNLINREMTTFDIVDDIDEVDFTHATSVAHDIHYIETSNEWTQWRDDLAEEMFS 146

Query: 61  GWQLCN 67
            W L N
Sbjct: 147 EWVLRN 152

[Close]

BLAST of CsaV3_1G045500 vs. TrEMBL
Match: tr|A0A1S4E5X8|A0A1S4E5X8_CUCME (uncharacterized protein LOC107992265 OS=Cucumis melo OX=3656 GN=LOC107992265 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-15
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
           +ACCLLHNLINRE+TN  I  ++DEVD  +AT   ++I+Y E SN+WSQWRDDL E MF 
Sbjct: 221 LACCLLHNLINREMTNFDIEDNIDEVDSTHATIAADDIHYIETSNEWSQWRDDLAEEMFT 280

Query: 61  GWQLCN 67
            W+L N
Sbjct: 281 EWELRN 286

[Close]

BLAST of CsaV3_1G045500 vs. TrEMBL
Match: tr|A0A1S3C570|A0A1S3C570_CUCME (putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103496992 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-15
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   MACCLLHNLINREITNVKILKDVDEVDLNYATTEGNNINYNEASNKWSQWRDDLVEAMFN 60
           + CCLLHNLINRE+TN  I  ++DEVD  +AT   ++I+Y E SN+WSQWRDDL E MF+
Sbjct: 238 LTCCLLHNLINREMTNFDIQDNIDEVDSTHATIATDDIHYIETSNEWSQWRDDLAEEMFS 297

Query: 61  GWQLCN 67
            W+L N
Sbjct: 298 EWELRN 303

The following BLAST results are available for this feature:

BLAST of CsaV3_1G045500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66784.1	1.6e-32	100.00	hypothetical protein Csa_1G690220 [Cucumis sativus]	[more]
XP_016902382.1	2.4e-15	60.61	PREDICTED: uncharacterized protein LOC107991657 [Cucumis melo]	[more]
XP_016898979.1	3.1e-15	59.09	PREDICTED: uncharacterized protein LOC107990391 [Cucumis melo]	[more]
XP_016903646.1	3.1e-15	60.61	PREDICTED: uncharacterized protein LOC107992265 [Cucumis melo]	[more]
XP_008457266.1	9.0e-15	59.09	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]

BLAST of CsaV3_1G045500 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G045500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G045500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0G4\|A0A0A0M0G4_CUCSA	1.1e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690220 PE=4 SV=1	[more]
tr\|A0A1S4E2C9\|A0A1S4E2C9_CUCME	1.6e-15	60.61	uncharacterized protein LOC107991657 OS=Cucumis melo OX=3656 GN=LOC107991657 PE=...	[more]
tr\|A0A1S4DSL6\|A0A1S4DSL6_CUCME	2.0e-15	59.09	uncharacterized protein LOC107990391 OS=Cucumis melo OX=3656 GN=LOC107990391 PE=...	[more]
tr\|A0A1S4E5X8\|A0A1S4E5X8_CUCME	2.0e-15	60.61	uncharacterized protein LOC107992265 OS=Cucumis melo OX=3656 GN=LOC107992265 PE=...	[more]
tr\|A0A1S3C570\|A0A1S3C570_CUCME	5.9e-15	59.09	putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103496992 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G045500.1	CsaV3_1G045500.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G045500	Silver-seed gourd	carcucB0949
CsaV3_1G045500	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G045500	Cucurbita maxima (Rimu)	cmacucB0072
CsaV3_1G045500	Cucumber (Gy14) v1	cgycucB450
CsaV3_1G045500	Cucurbita maxima (Rimu)	cmacucB0099
CsaV3_1G045500	Cucurbita moschata (Rifu)	cmocucB0059
CsaV3_1G045500	Cucurbita moschata (Rifu)	cmocucB0090
CsaV3_1G045500	Cucurbita pepo (Zucchini)	cpecucB0799
CsaV3_1G045500	Cucurbita pepo (Zucchini)	cpecucB0874
CsaV3_1G045500	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G045500	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G045500	Melon (DHL92) v3.5.1	cucmeB045
CsaV3_1G045500	Melon (DHL92) v3.6.1	cucmedB042
CsaV3_1G045500	Watermelon (Charleston Gray)	cucwcgB091
CsaV3_1G045500	Watermelon (97103) v1	cucwmB100
CsaV3_1G045500	Watermelon (97103) v2	cucwmbB073
CsaV3_1G045500	Watermelon (97103) v2	cucwmbB079
CsaV3_1G045500	Wax gourd	cucwgoB112